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RIFCSPLOWO2_01_FULL_OD1_41_220_rifcsplowo2_01_scaffold_5004

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_01_FULL_OD1_41_220_rifcsplowo2_01_scaffold_5004_1
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

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2..388
DNA (387bp) protein (129aa)
Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_40_42_curated
RIFCSPLOWO2_01_FULL_OD1_41_220_rifcsplowo2_01_scaffold_5004_2
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

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406..693
DNA (288bp) protein (96aa)
Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_40_42_curated
RIFCSPLOWO2_01_FULL_OD1_41_220_rifcsplowo2_01_scaffold_5004_3
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

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763..1305
DNA (543bp) protein (181aa)
Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_40_42_curated
RIFCSPLOWO2_01_FULL_OD1_41_220_rifcsplowo2_01_scaffold_5004_4
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

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1676..2152
DNA (477bp) protein (159aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_40_42_curated
hypothetical protein id=133596 bin=ACD81 species=ACD81 genus=ACD81 taxon_order=ACD81 taxon_class=ACD81 phylum=OD1 tax=ACD81 organism_group=OD1 (Parcubacteria) organism_desc=OD1
RIFCSPLOWO2_01_FULL_OD1_41_220_rifcsplowo2_01_scaffold_5004_5
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

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2181..2618
DNA (438bp) protein (146aa)
Uncharacterized protein n=1 Tax=Clostridium difficile DA00212 RepID=T3U7D0_CLODI
Uncharacterized protein Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_40_42_curated
RIFCSPLOWO2_01_FULL_OD1_41_220_rifcsplowo2_01_scaffold_5004_6
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

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2633..3007
DNA (375bp) protein (125aa)
Marine sediment metagenome DNA, contig: S06H3_S06762 Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_40_42_curated
RIFCSPLOWO2_01_FULL_OD1_41_220_rifcsplowo2_01_scaffold_5004_7
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

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3075..4751
DNA (1677bp) protein (559aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_40_42_curated
Recombinase id=1803611 bin=GWD2_CPR2_39_7 species=ACD40 genus=ACD40 taxon_order=ACD40 taxon_class=ACD40 phylum=OP11 tax=GWD2_CPR2_39_7 organism_group=CPR2 organism_desc=Same as C1_41_48, C2_39_35, D1_39_7
Resolvase protein
RIFCSPLOWO2_01_FULL_OD1_41_220_rifcsplowo2_01_scaffold_5004_8
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

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5049..7208
DNA (2160bp) protein (720aa)
Elongation factor G n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PX81_9BACT
elongation factor G; K02355 elongation factor G Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_40_42_curated
elongation factor G
RIFCSPLOWO2_01_FULL_OD1_41_220_rifcsplowo2_01_scaffold_5004_9
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

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7422..12983
DNA (5562bp) protein (1854aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_40_42_curated
Putative uncharacterized protein id=3666236 bin=GWA2_OP3_52_12 species=Leptothrix cholodnii genus=Leptothrix taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
fibronectin type III protein
RIFCSPLOWO2_01_FULL_OD1_41_220_rifcsplowo2_01_scaffold_5004_10
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

13065..13319
DNA (255bp) protein (85aa)
Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_40_42_curated
RIFCSPLOWO2_01_FULL_OD1_41_220_rifcsplowo2_01_scaffold_5004_11
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

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13330..14268
DNA (939bp) protein (313aa)
Putative membrane-anchored cell surface protein n=1 Tax=Bacteriovorax marinus (strain ATCC BAA-682 / DSM 15412 / SJ) RepID=E1X3N0_BACMS
putative membrane-anchored cell surface protein Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_40_42_curated
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_41_220_rifcsplowo2_01_scaffold_5004_12
Parcubacteria bacterium GW2011_GWF2_42_7, Parcubacteria, Bacteria

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14405..15115
DNA (711bp) protein (237aa)
Transposase {ECO:0000313|EMBL:KKS71404.1}; TaxID=1618966 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWF2_42_7.;"
Transposase id=5227293 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_41_220_rifcsplowo2_01_scaffold_5004_13
RLO_OD1_Nomurabacteria_40_42, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

15503..18310
DNA (2808bp) protein (936aa)
Tax=RIFCSPLOWO2_12_FULL_OD1_Nomurabacteria_40_42_curated
RIFCSPLOWO2_01_FULL_OD1_41_220_rifcsplowo2_01_scaffold_5004_14
Parcubacteria bacterium GW2011_GWB1_41_5, Parcubacteria, Bacteria

Not on your lists

comp(18881..19351)
DNA (471bp) protein (157aa)
Uncharacterized protein {ECO:0000313|EMBL:KKS11119.1}; TaxID=1618868 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWB1_41_5.;"
RIFCSPLOWO2_01_FULL_OD1_41_220_rifcsplowo2_01_scaffold_5004_15

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19714..20034
DNA (321bp) protein (107aa)
Elongation factor Tu {ECO:0000313|EMBL:KKR61378.1}; TaxID=1618817 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_40_37.;"
elongation factor Tu; K02358 elongation factor Tu id=5802995 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
elongation factor Tu
Displaying 15 items

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