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RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_3232

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_3232_1

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3..140
DNA (138bp) protein (46aa)
Uncharacterized protein {ECO:0000313|EMBL:KKS95833.1}; Flags: Fragment;; TaxID=1618651 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWB1_43_13.;"
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_3232_2
GWA1_OD1_43_15, Giovannonibacteria, Parcubacteria, Bacteria

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141..1379
DNA (1239bp) protein (413aa)
DEAD/DEAH box helicase; K11927 ATP-dependent RNA helicase RhlE [EC:3.6.4.13] id=15190448 bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete
DEAD/DEAH box helicase domain protein Tax=GWA1_OD1_43_15
ATP-dependent RNA helicase RhlE
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_3232_3
GWC2_OD1_43_8, Giovannonibacteria, Parcubacteria, Bacteria

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1478..3262
DNA (1785bp) protein (595aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI000362C202
GTP-binding protein TypA/BipA {ECO:0000313|EMBL:KKT21765.1}; TaxID=1618656 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWC2_43_8.;"
GTP-binding protein TypA/BipA
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_3232_4

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3580..4080
DNA (501bp) protein (167aa)
Uncharacterized protein n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJT2_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KKT62925.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
membrane protein
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_3232_5
GWC2_OD1_43_8, Giovannonibacteria, Parcubacteria, Bacteria

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comp(4070..5008)
DNA (939bp) protein (313aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI0003688D70
Uncharacterized protein {ECO:0000313|EMBL:KKT21767.1}; TaxID=1618656 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWC2_43_8.;"
cell division protein
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_3232_6
GWA1_OD1_43_15, Giovannonibacteria, Parcubacteria, Bacteria

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comp(5016..5714)
DNA (699bp) protein (233aa)
Cell division ATP-binding protein FtsE Tax=GWA1_OD1_43_15
cell division ATP-binding protein FtsE; K09812 cell division transport system ATP-binding protein id=5227277 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
ftsE; cell division ATP-binding protein FtsE
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_3232_7
GWA1_OD1_43_15, Giovannonibacteria, Parcubacteria, Bacteria

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comp(5716..6732)
DNA (1017bp) protein (339aa)
Peptide chain release factor 2 Tax=GWA1_OD1_43_15
Peptide chain release factor 2 id=3506544 bin=GWC1_OD1_38_17 species=PER_GWC2_33_13 genus=PER_GWC2_33_13 taxon_order=PER_GWC2_33_13 taxon_class=PER_GWC2_33_13 phylum=PER tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
prfB; protein release subunit factor B
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_3232_8

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comp(6968..7522)
DNA (555bp) protein (185aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT62929.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
alias=gwe2_scaffold_360_14 id=15190662 bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_3232_9

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comp(7526..7918)
DNA (393bp) protein (131aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT62930.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_3232_10
unknown

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7936..8034
DNA (99bp) protein (33aa)

This feature has no annotations

RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_3232_11

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comp(8035..9840)
DNA (1806bp) protein (602aa)
Elongation factor 4 {ECO:0000313|EMBL:KKT62931.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
GTP-binding protein LepA id=4968540 bin=GWA2_CPR4_42_17 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=GWA2_CPR4_42_17 organism_group=CPR4 organism_desc=from megabin
GTP-binding protein LepA
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_3232_12

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comp(10017..10316)
DNA (300bp) protein (100aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT62932.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_3232_13
GWC2_OD1_43_8, Giovannonibacteria, Parcubacteria, Bacteria

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comp(10498..12195)
DNA (1698bp) protein (566aa)
Integral membrane protein MviN {ECO:0000313|EMBL:KKT21774.1}; TaxID=1618656 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWC2_43_8.;"
Integral membrane protein MviN id=4968543 bin=GWA2_CPR4_42_17 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=GWA2_CPR4_42_17 organism_group=CPR4 organism_desc=from megabin
integral membrane protein MviN
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_3232_14
GWC2_OD1_43_8, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(12192..14507)
DNA (2316bp) protein (772aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT21775.1}; TaxID=1618656 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWC2_43_8.;"
Putative uncharacterized protein id=4968544 bin=GWA2_CPR4_42_17 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=GWA2_CPR4_42_17 organism_group=CPR4 organism_desc=from megabin
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_3232_15
GWC2_OD1_43_8, Giovannonibacteria, Parcubacteria, Bacteria

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comp(15044..17788)
DNA (2745bp) protein (915aa)
vitamin B12-dependent ribonucleotide reductase (EC:1.17.4.1)
Ribonucleotide reductase of class II (Coenzyme B12-dependent) {ECO:0000313|EMBL:KKT21776.1}; TaxID=1618656 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW20
Ribonucleotide reductase of class II (Coenzyme B12-dependent) id=1842214 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_3232_16

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comp(18024..18632)
DNA (609bp) protein (203aa)
Methylase involved in ubiquinone/menaquinone biosynthesis {ECO:0000313|EMBL:KKT62936.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_G
hypothetical protein id=133438 bin=ACD81 species=ACD81 genus=ACD81 taxon_order=ACD81 taxon_class=ACD81 phylum=OD1 tax=ACD81 organism_group=OD1 (Parcubacteria) organism_desc=OD1
methylase
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_3232_17
GWC2_OD1_43_8, Giovannonibacteria, Parcubacteria, Bacteria

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comp(18636..21098)
DNA (2463bp) protein (821aa)
Gyrase subunit A protein {ECO:0000313|EMBL:KKT21778.1}; TaxID=1618656 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWC2_43_8.;"
id=5227153 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
GyrA; type IIA topoisomerase, A subunit
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_3232_18
GWA1_OD1_43_15, Giovannonibacteria, Parcubacteria, Bacteria

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comp(21142..21573)
DNA (432bp) protein (144aa)
Tax=GWA1_OD1_43_15
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_3232_19
GWA1_OD1_43_15, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(21570..22079)
DNA (510bp) protein (170aa)
transmembrane_regions id=5227290 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
Tax=GWA1_OD1_43_15
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_3232_20
GWA1_OD1_43_15, Giovannonibacteria, Parcubacteria, Bacteria

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comp(22117..22638)
DNA (522bp) protein (174aa)
seg id=5803073 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
Tax=GWA1_OD1_43_15
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_3232_21
GWA1_OD1_43_15, Giovannonibacteria, Parcubacteria, Bacteria

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comp(22640..23239)
DNA (600bp) protein (200aa)
General secretion pathway protein H id=1888997 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
Tax=GWA1_OD1_43_15
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_3232_22

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comp(23296..24045)
DNA (750bp) protein (250aa)
Prepilin peptidase-1 n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PXW4_9BACT
Type IV leader peptidase family protein {ECO:0000313|EMBL:KKS95853.1}; TaxID=1618651 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWB1_43_13.;"
peptidase A24A domain-containing protein
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_3232_23
GWA1_OD1_43_15, Giovannonibacteria, Parcubacteria, Bacteria

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24124..24807
DNA (684bp) protein (228aa)
Transposase Tax=GWA1_OD1_43_15
Transposase id=4901177 bin=GWC2_OD1_43_27 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
hypothetical protein
Displaying 23 items

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