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RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_9120_2

Organism: Candidatus Giovannonibacteria bacterium RIFCSPLOWO2_01_FULL_43_160

near complete RP 43 / 55 MC: 1 BSCG 45 / 51 ASCG 9 / 38
Location: 134..697

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma-W factor {ECO:0000313|EMBL:KKS95463.1}; Flags: Fragment;; TaxID=1618651 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWB1_43_13. similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 131.0
  • Bit_score: 259
  • Evalue 5.20e-66
RNA polymerase, sigma-24 subunit, ECF subfamily id=4731799 bin=GWC2_OD1_43_27 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete) similarity UNIREF
DB: UNIREF100
  • Identity: 51.8
  • Coverage: 193.0
  • Bit_score: 198
  • Evalue 4.60e-48
rpoE; RNA polymerase sigma-24 factor similarity KEGG
DB: KEGG
  • Identity: 37.9
  • Coverage: 177.0
  • Bit_score: 118
  • Evalue 2.90e-24

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Taxonomy

Parcubacteria (Giovannonibacteria) bacterium GW2011_GWB1_43_13 → Parcubacteria → Bacteria

Sequences

DNA sequence
Length: 564
ATGGAACCTTCTGACGCAAAACTTATTCTCGGTTATTTTTCAGGCGATGAAAAAGCGCTGGAGATTCTTTTCGGCCGTTATTTTAAGCAAGTATATAGATTCGCGCATAGCTATTCAAAAAACAGCGAAGACGCCGAAGATATTACGCAGAAAACTTTTTTGAAGGCCTGGCGGAACTTAAAAAAATTTGATCAAAGTAAAAATTTTAAAACATGGATTTTCTCTATCGCTAAAAATTCGGCGATTGATTTTCTCCGAAAAAAGAGGGAAATTTTATTTTCCGAATTGAAAAACACTGATGGAGAAAATATGATTGCCGAAACGCTTGCTGACACAGCACTTTTGCCGACGGAACTTTCCGAAAAAACAGAAAAATTTCGCAACCTTGCTTTAGCTGTAAGCAGACTCCCGCAAAAATACGGTGATGTAATTACTTTAAGGTATGAAGAATATTTGTCTTTTTCAGAAATTTCGCGATTTTTGGGCGAAAAATTAAATACCATCAAAAGCCGCCACCGGCGGGCTCTTATGATGCTAAAGTCAGCTTTTTTGCACCAAAAATAA
PROTEIN sequence
Length: 188
MEPSDAKLILGYFSGDEKALEILFGRYFKQVYRFAHSYSKNSEDAEDITQKTFLKAWRNLKKFDQSKNFKTWIFSIAKNSAIDFLRKKREILFSELKNTDGENMIAETLADTALLPTELSEKTEKFRNLALAVSRLPQKYGDVITLRYEEYLSFSEISRFLGEKLNTIKSRHRRALMMLKSAFLHQK*