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RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_9120

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_9120_1
GWC2_OD1_43_8, Giovannonibacteria, Parcubacteria, Bacteria

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2..112
DNA (111bp) protein (37aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT20682.1}; TaxID=1618656 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWC2_43_8.;"
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_9120_2

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134..697
DNA (564bp) protein (188aa)
RNA polymerase sigma-W factor {ECO:0000313|EMBL:KKS95463.1}; Flags: Fragment;; TaxID=1618651 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWB1_43_13.
RNA polymerase, sigma-24 subunit, ECF subfamily id=4731799 bin=GWC2_OD1_43_27 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
rpoE; RNA polymerase sigma-24 factor
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_9120_3

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721..1080
DNA (360bp) protein (120aa)
Uncharacterized protein {ECO:0000313|EMBL:KKS95464.1}; TaxID=1618651 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWB1_43_13.;"
hypothetical protein id=3950287 bin=GWA2_CPR4_42_17 species=PER_GWC2_39_15 genus=PER_GWC2_39_15 taxon_order=PER_GWC2_39_15 taxon_class=PER_GWC2_39_15 phylum=PER tax=GWA2_CPR4_42_17 organism_group=CPR4 organism_desc=from megabin
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_9120_4

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1067..1519
DNA (453bp) protein (151aa)
Uncharacterized protein {ECO:0000313|EMBL:KKS95465.1}; TaxID=1618651 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWB1_43_13.;"
id=4731801 bin=GWC2_OD1_43_27 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_9120_5

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1528..1962
DNA (435bp) protein (145aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT63470.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
Predicted protein id=1916096 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_9120_6
GWA1_OD1_43_15, Giovannonibacteria, Parcubacteria, Bacteria

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1959..3572
DNA (1614bp) protein (538aa)
Efflux transporter, RND family, MFP subunit Tax=GWA1_OD1_43_15
Efflux transporter, RND family, MFP subunit (Fragment) id=4731802 bin=GWC2_OD1_43_27 species=ACD81 genus=ACD81 taxon_order=ACD81 taxon_class=ACD81 phylum=OD1 tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
Efflux transporter, RND family, MFP subunit
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_9120_7

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3569..4297
DNA (729bp) protein (243aa)
Antimicrobial peptide ABC transporter ATPase {ECO:0000313|EMBL:KKS95468.1}; TaxID=1618651 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWB1_43_13.;"
ABC-type transport system id=4731803 bin=GWC2_OD1_43_27 species=PER_GWF2_38_31 genus=PER_GWF2_38_31 taxon_order=PER_GWF2_38_31 taxon_class=PER_GWF2_38_31 phylum=PER tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
ABC transporter
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_9120_8
GWA1_OD1_43_15, Giovannonibacteria, Parcubacteria, Bacteria

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4294..5505
DNA (1212bp) protein (404aa)
ABC transporter, permease protein Tax=GWA1_OD1_43_15
ABC transporter, permease protein id=4731804 bin=GWC2_OD1_43_27 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
MacB-like periplasmic core domain containing protein
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_9120_9

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5573..6253
DNA (681bp) protein (227aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI00035F191A
Uncharacterized protein {ECO:0000313|EMBL:KKT63474.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_9120_10

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6264..6491
DNA (228bp) protein (76aa)
Uncharacterized protein {ECO:0000313|EMBL:KKS95471.1}; TaxID=1618651 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWB1_43_13.;"
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_9120_11

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comp(6602..6814)
DNA (213bp) protein (71aa)
Uncharacterized protein {ECO:0000313|EMBL:KKS95472.1}; TaxID=1618651 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWB1_43_13.;"
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_9120_12

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comp(6976..7398)
DNA (423bp) protein (141aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT63477.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_9120_13

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7502..8176
DNA (675bp) protein (225aa)
endonuclease III (EC:4.2.99.18); K10773 endonuclease III [EC:4.2.99.18] id=15189875 bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete
endonuclease III (EC:4.2.99.18)
Endonuclease III {ECO:0000313|EMBL:KKS95474.1}; TaxID=1618651 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWB1_43_13.;"
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_9120_14

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8187..8783
DNA (597bp) protein (199aa)
Uncharacterized protein {ECO:0000313|EMBL:KKS95475.1}; TaxID=1618651 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWB1_43_13.;"
transmembrane_regions 118..137 id=9089 bin=ACD15 species=ACD15 genus=ACD15 taxon_order=ACD15 taxon_class=ACD15 phylum=OD1-i tax=ACD15 organism_group=OD1-i organism_desc=OD1-i
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_9120_15

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8762..9016
DNA (255bp) protein (85aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT63480.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
transmembrane_regions 118..137 id=9089 bin=ACD15 species=ACD15 genus=ACD15 taxon_order=ACD15 taxon_class=ACD15 phylum=OD1-i tax=ACD15 organism_group=OD1-i organism_desc=OD1-i
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_9120_16
GWC2_OD1_43_8, Giovannonibacteria, Parcubacteria, Bacteria

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9021..9659
DNA (639bp) protein (213aa)
Ribosomal RNA small subunit methyltransferase I {ECO:0000313|EMBL:KKT21431.1}; TaxID=1618656 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWC2_43_8.;
tetrapyrrole methylase family protein; K07056 id=84240 bin=ACD56 species=ACD56 genus=ACD56 taxon_order=ACD56 taxon_class=ACD56 phylum=OD1-i tax=ACD56 organism_group=OD1-i organism_desc=OD1-i
uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_9120_17

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9701..10375
DNA (675bp) protein (225aa)
Ribosomal RNA small subunit methyltransferase E {ECO:0000313|EMBL:KKT63482.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.
Ribosomal RNA small subunit methyltransferase E id=1955907 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_9120_18

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10460..11119
DNA (660bp) protein (220aa)
Transcriptional regulator, PaaX family {ECO:0000313|EMBL:KKS95479.1}; TaxID=1618651 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWB1_43_13.;"
paaX; repressor in ring oxydation complex/phenylacetic acid degradation pathway related protein (PaaX); K02616 phenylacetic acid degradation operon negative regulatory protein id=16444 bin=ACD1 species=ACD1 genus=ACD1 taxon_order=ACD1 taxon_class=ACD1 phylum=OD1-i tax=ACD1 organism_group=OD1-i organism_desc=OD1-i
PaaX family transcriptional regulator
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_9120_19
unknown

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11070..11219
DNA (150bp) protein (50aa)

This feature has no annotations

RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_9120_20
GWA1_OD1_43_15, Giovannonibacteria, Parcubacteria, Bacteria

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comp(11276..11572)
DNA (297bp) protein (99aa)
Tax=GWA1_OD1_43_15
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_9120_21
GWA1_OD1_43_15, Giovannonibacteria, Parcubacteria, Bacteria

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11641..12216
DNA (576bp) protein (192aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00036FA095
50S ribosomal protein L10 Tax=GWA1_OD1_43_15
rplJ; 50S ribosomal protein L10
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_9120_22

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12220..12591
DNA (372bp) protein (124aa)
50S ribosomal protein L7/L12 {ECO:0000313|EMBL:KKT63486.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
50S ribosomal protein L7/L12 id=2598213 bin=GWC1_OD1_38_17 species=ACD1 genus=ACD1 taxon_order=ACD1 taxon_class=ACD1 phylum=OD1-i tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
rplL; 50S ribosomal protein L7/L12
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_9120_23

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12657..13235
DNA (579bp) protein (193aa)
Putative transcriptional regulator {ECO:0000313|EMBL:KKT63487.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
probable transcriptional regulator id=4790147 bin=GWC2_OD1_43_27 species=candidate division TM7 single-cell isolate TM7c genus=unknown taxon_order=unknown taxon_class=unknown phylum=Candidatus Saccharibacteria tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_9120_24

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13514..14200
DNA (687bp) protein (229aa)
Small-conductance mechanosensitive ion channel-like protein {ECO:0000313|EMBL:KKT63488.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011
small-conductance mechanosensitive ion channel id=5803314 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
small-conductance mechanosensitive ion channel
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_9120_25

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14717..14824
DNA (108bp) protein (36aa)
Uncharacterized protein {ECO:0000313|EMBL:KKS95486.1}; Flags: Fragment;; TaxID=1618651 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWB1_43_13.;"
Displaying 25 items

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