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RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_6312

Search features with annotation key words

Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_6312_1
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

197..1537
DNA (1341bp) protein (447aa)
dnaA; chromosome replication initiator DnaA; K02313 chromosomal replication initiator protein Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
dnaA; chromosomal replication initiation protein; K02313 chromosomal replication initiator protein id=5803203 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
chromosomal replication initiation protein
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_6312_2
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

1854..2954
DNA (1101bp) protein (367aa)
DNA polymerase III subunit beta (EC:2.7.7.7); K02338 DNA polymerase III subunit beta [EC:2.7.7.7] Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
DNA polymerase III subunit beta (EC:2.7.7.7)
DNA polymerase III subunit beta n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PWX1_9BACT
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_6312_3
unknown

Not on your lists

2988..3134
DNA (147bp) protein (49aa)

This feature has no annotations

RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_6312_4
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

3246..3500
DNA (255bp) protein (85aa)
Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_6312_5
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

3854..4342
DNA (489bp) protein (163aa)
crossover junction endodeoxyribonuclease RuvC (EC:3.1.22.4); K01159 crossover junction endodeoxyribonuclease RuvC [EC:3.1.22.4] Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
ruvC; Holliday junction resolvase (EC:3.1.22.4); K01159 crossover junction endodeoxyribonuclease RuvC [EC:3.1.22.4] id=5227411 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
crossover junction endodeoxyribonuclease RuvC (EC:3.1.22.4)
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_6312_6
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

4710..4868
DNA (159bp) protein (53aa)
Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_6312_7
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(5033..6433)
DNA (1401bp) protein (467aa)
tyrosyl-tRNA synthetase (EC:6.1.1.1); K01866 tyrosyl-tRNA synthetase [EC:6.1.1.1] Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
Tyrosine--tRNA ligase n=1 Tax=Bacillus alcalophilus ATCC 27647 RepID=J8TNM0_BACAO
tyrosyl-tRNA synthetase
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_6312_8
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

6528..8969
DNA (2442bp) protein (814aa)
1A family penicillin-binding protein Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
putative penicillin-binding protein id=5803206 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_6312_9
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(8992..9522)
DNA (531bp) protein (177aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
YebC/PmpR family DNA-binding regulatory protein id=5803211 bin=OD1_GWC2_34_28 species=unknown genus=Fervidobacterium taxon_order=Thermotogales taxon_class=Thermotogae phylum=Thermotogae tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
transcriptional regulator
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_6312_10
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(9710..10741)
DNA (1032bp) protein (344aa)
ruvB; Holliday junction DNA helicase RuvB (EC:3.1.22.4); K03551 holliday junction DNA helicase RuvB [EC:3.6.4.12] Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
ruvB; Holliday junction DNA helicase RuvB (EC:3.1.22.4)
id=5227412 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_6312_11
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(11398..13074)
DNA (1677bp) protein (559aa)
type IV-A pilus assembly ATPase PilB; K02652 type IV pilus assembly protein PilB Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
pilB1; type IV-A pilus assembly ATPase PilB; K02652 type IV pilus assembly protein PilB id=5803215 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
type IV-A pilus assembly ATPase PilB
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_6312_12
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(13123..13560)
DNA (438bp) protein (146aa)
transmembrane_regions 7..29 Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
transmembrane_regions 7..29 id=22864 bin=ACD22 species=ACD22 genus=ACD22 taxon_order=ACD22 taxon_class=ACD22 phylum=WWE3 tax=ACD22 organism_group=WWE3 organism_desc=WWE3
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_6312_13
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(13566..14021)
DNA (456bp) protein (152aa)
transmembrane_regions 5..27 Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
transmembrane_regions 5..27 id=22862 bin=ACD22 species=ACD22 genus=ACD22 taxon_order=ACD22 taxon_class=ACD22 phylum=WWE3 tax=ACD22 organism_group=WWE3 organism_desc=WWE3
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_6312_14
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

14095..15456
DNA (1362bp) protein (454aa)
Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_6312_15
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

15611..16075
DNA (465bp) protein (155aa)
hypothetical protein; K06925 UPF0079 ATP-binding protein Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
Putative uncharacterized protein id=2966082 bin=GWA1_ZB2_49_26 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
Predicted ATPase
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_6312_16
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

16188..18590
DNA (2403bp) protein (801aa)
polA; DNA polymerase I (EC:2.7.7.7); K02335 DNA polymerase I [EC:2.7.7.7] Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
polA; DNA polymerase I (EC:2.7.7.7); K02335 DNA polymerase I [EC:2.7.7.7] id=5803218 bin=OD1_GWC2_34_28 species=uncultured bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
polA; DNA polymerase I (EC:2.7.7.7)
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_6312_17
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

18587..19306
DNA (720bp) protein (240aa)
id=5803220 Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
id=5803220 bin=OD1_GWC2_34_28 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_6312_18
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

19742..20275
DNA (534bp) protein (178aa)
hypothetical protein; K08981 putative membrane protein Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
membrane-flanked domain protein; K08981 putative membrane protein id=74772 bin=ACD52 species=ACD52 genus=ACD52 taxon_order=ACD52 taxon_class=ACD52 phylum=OP11 tax=ACD52 organism_group=OP11 (Microgenomates) organism_desc=OP11
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_6312_19
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

20545..21036
DNA (492bp) protein (164aa)
tRNA/rRNA methyltransferase SpoU Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
tRNA/rRNA methyltransferase (SpoU) id=5227445 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
tRNA/rRNA methyltransferase SpoU
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_6312_20
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(21580..22491)
DNA (912bp) protein (304aa)
formamidopyrimidine-DNA glycosylase (EC:3.2.2.23); K10563 formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
formamidopyrimidine-DNA glycosylase (EC:3.2.2.23)
Formamidopyrimidine-DNA glycosylase id=5227447 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_6312_21
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(22499..23776)
DNA (1278bp) protein (426aa)
murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC:6.3.2.13); K01928 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] Tax=RIFCSPLOWO2_12_FU
UDP-N-acetylmuramyl-tripeptide synthetase; K01928 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] id=5803224 bin=OD1_GWC2_34_28 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC:6.3.2.13)
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_6312_22
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(23781..24362)
DNA (582bp) protein (194aa)
ruvA; holliday junction ATP-dependent DNA helicase RuvA (EC:3.6.4.12) Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
Holliday junction DNA helicase RuvA; K03550 holliday junction DNA helicase RuvA [EC:3.6.4.12] id=5803226 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
Holliday junction DNA helicase RuvA
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_6312_23
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

24820..25014
DNA (195bp) protein (65aa)
Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_6312_24
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists


25085..25351
DNA (267bp) protein (89aa)
30S ribosomal protein S20; K02968 small subunit ribosomal protein S20 Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
30S ribosomal protein S20 id=3305463 bin=GWA2_CPR4_42_17 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=GWA2_CPR4_42_17 organism_group=CPR4 organism_desc=from megabin
30S ribosomal protein S20
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_6312_25
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(25494..25589)
DNA (96bp) protein (32aa)
Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_6312_26
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(25736..26221)
DNA (486bp) protein (162aa)
Putative uncharacterized protein Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
Putative uncharacterized protein id=3305474 bin=GWA2_CPR4_42_17 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=GWA2_CPR4_42_17 organism_group=CPR4 organism_desc=from megabin
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_6312_27
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(26214..26678)
DNA (465bp) protein (155aa)
Vitamin K epoxide reductase n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LVJ8_BACS4 id=120238 bin=ACD76 species=Bacillus cellulosilyticus genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=ACD76 organism_group=OD1 (Parcubacteria) organism_desc=OD1
Vitamin K epoxide reductase Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
vitamin K epoxide reductase
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_6312_28
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(26682..27419)
DNA (738bp) protein (246aa)
dsbG; protein-disulfide isomerase Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
dsbG; protein-disulfide isomerase id=120242 bin=ACD76 species=ACD76 genus=ACD76 taxon_order=ACD76 taxon_class=ACD76 phylum=OD1 tax=ACD76 organism_group=OD1 (Parcubacteria) organism_desc=OD1
Protein-disulfide isomerase
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_6312_29
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

27959..29821
DNA (1863bp) protein (621aa)
Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_6312_30
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

29833..31269
DNA (1437bp) protein (479aa)
Laminin G, domain-containing 2 n=1 Tax=Chloroflexus aggregans (strain MD-66 / DSM 9485) RepID=B8G5M0_CHLAD
laminin G domain-containing protein Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
laminin G domain-containing protein
Displaying items 1-30 of 44 in total

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