ggKbase home page

RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_4776

Search features with annotation key words

Displaying items 1-30 of 42 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_4776_1
R_RIF_OD1_09_44_41, RIF-OD1-9, Parcubacteria, Bacteria

Not on your lists

91..513
DNA (423bp) protein (141aa)
Transposase and inactivated derivatives n=1 Tax=uncultured archaeon GZfos18H11 RepID=Q64D77_9ARCH
transposase IS200-family protein Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_09_44_41_curated
transposase IS200-family protein
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_4776_2
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(588..1982)
DNA (1395bp) protein (465aa)
Uncharacterized protein Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
Uncharacterized protein id=5800035 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_4776_3
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(2000..2440)
DNA (441bp) protein (147aa)
family 2 glycosyl transferase Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
Putative uncharacterized protein id=3544251 bin=GWA1_ZB2_49_26 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
family 2 glycosyl transferase
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_4776_4
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(2437..3141)
DNA (705bp) protein (235aa)
transmembrane_regions Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
transmembrane_regions id=5226927 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_4776_5
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(3209..4447)
DNA (1239bp) protein (413aa)
Glycosyltransferase involved in cell wall biogenesis n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PVI5_9BACT
putative bi-functional transferase/deacetylase Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
Glycosyltransferase involved in cell wall biogenesis
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_4776_6
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists


4552..5331
DNA (780bp) protein (260aa)
phenylalanyl-tRNA synthetase subunit alpha; K01889 phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
Phenylalanine--tRNA ligase alpha subunit id=3012602 bin=GWC1_OD1_38_17 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
phenylalanyl-tRNA synthetase subunit alpha
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_4776_7
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

5341..5862
DNA (522bp) protein (174aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
protein of unknown function DUF88 id=31168 bin=ACD28 species=ACD28 genus=ACD28 taxon_order=ACD28 taxon_class=ACD28 phylum=PER tax=ACD28 organism_group=PER (Peregrinibacteria) organism_desc=PER
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_4776_8
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

5944..7893
DNA (1950bp) protein (650aa)
pheT; phenylalanyl-tRNA ligase subunit beta PheT (EC:6.1.1.20) Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
pheT; phenylalanyl-tRNA ligase subunit beta PheT (EC:6.1.1.20)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA010-E09 RepID=UPI000363D839
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_4776_9
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

7996..10074
DNA (2079bp) protein (693aa)
DNA gyrase subunit B; K02470 DNA gyrase subunit B [EC:5.99.1.3] Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
gyrB; DNA gyrase subunit B (EC:5.99.1.3); K02470 DNA gyrase subunit B [EC:5.99.1.3] id=5803657 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
DNA gyrase subunit B
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_4776_10
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

10353..11339
DNA (987bp) protein (329aa)
tRNA-dihydrouridine synthase Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
hypothetical protein id=138518 bin=ACD9 species=ACD9 genus=ACD9 taxon_order=ACD9 taxon_class=ACD9 phylum=OD1-i tax=ACD9 organism_group=OD1-i organism_desc=OD1-i
tRNA-dihydrouridine synthase
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_4776_11
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

11428..11712
DNA (285bp) protein (95aa)
Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_4776_12
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

11807..12067
DNA (261bp) protein (87aa)
Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_4776_13
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

12122..13159
DNA (1038bp) protein (346aa)
DNA polymerase III subunits gamma and tau; K02343 DNA polymerase III subunit gamma/tau [EC:2.7.7.7] Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
DNA polymerase III subunits gamma and tau; K02343 DNA polymerase III subunit gamma/tau [EC:2.7.7.7] id=5803572 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
DNA polymerase III subunits gamma and tau
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_4776_14
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

13414..13674
DNA (261bp) protein (87aa)
HTH ArsR-type DNA-binding domain Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
HTH ArsR-type DNA-binding domain id=5801689 bin=GWE2_OD1_42_8 species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=GWE2_OD1_42_8 organism_group=OD1 (Parcubacteria) organism_desc=GW2011_OD1_1 GW2011_A
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_4776_15
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

14106..14606
DNA (501bp) protein (167aa)
Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_4776_16
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(14636..15718)
DNA (1083bp) protein (361aa)
Putative ribosome biogenesis GTPase RsgA n=1 Tax=uncultured bacterium RepID=K2ELZ1_9BACT
ribosome-associated GTPase Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
ribosome-associated GTPase
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_4776_17
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

15811..16008
DNA (198bp) protein (66aa)
Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_4776_18
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

16035..16580
DNA (546bp) protein (182aa)
phosphoglycerate mutase family protein; K15634 probable phosphoglycerate mutase [EC:5.4.2.1] Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
Putative uncharacterized protein n=1 Tax=Micromonospora sp. ATCC 39149 RepID=C4RLB0_9ACTO id=6990 bin=ACD13 species=Micromonospora sp. ATCC 39149 genus=Micromonospora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=ACD13 organism_group=OP11 (Microgenomates) organism_desc=OP11
Phosphoglycerate mutase
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_4776_19
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

16728..18026
DNA (1299bp) protein (433aa)
phosphoribosylamine--glycine ligase (EC:6.3.4.13); K01945 phosphoribosylamine--glycine ligase [EC:6.3.4.13] Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
phosphoribosylamine--glycine ligase (EC:6.3.4.13); K01945 phosphoribosylamine--glycine ligase [EC:6.3.4.13] id=7200923 bin=TA06_GWE2_final species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=TA06_GWE2_final organism_group=TA06
phosphoribosylamine--glycine ligase (EC:6.3.4.13)
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_4776_20
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

18189..18551
DNA (363bp) protein (121aa)
prevent-host-death family protein Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
YefM-like id=5802256 bin=PER_GWA2_38_35 species=PERA2_38_36 genus=PERA2_38_36 taxon_order=PERA2_38_36 taxon_class=PERA2_38_36 phylum=PER tax=PER_GWA2_38_35 organism_group=PER (Peregrinibacteria) organism_desc=This is the curated version (7 contigs can be represented as 5 scaffolds)
prevent-host-death family protein
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_4776_21
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

18553..18810
DNA (258bp) protein (86aa)
addiction module toxin RelE/StbE; K06218 RelE protein Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
addiction module toxin RelE/StbE; K06218 RelE protein id=5802257 bin=PER_GWA2_38_35 species=PERA2_38_36 genus=PERA2_38_36 taxon_order=PERA2_38_36 taxon_class=PERA2_38_36 phylum=PER tax=PER_GWA2_38_35 organism_group=PER (Peregrinibacteria) organism_desc=This is the curated version (7 contigs can be represented as 5 scaffolds)
addiction module toxin RelE/StbE
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_4776_22
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

18902..19546
DNA (645bp) protein (215aa)
Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_4776_23
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

19973..20569
DNA (597bp) protein (199aa)
Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_4776_24
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

20827..21435
DNA (609bp) protein (203aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI00037064D4
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_4776_25
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(21516..22727)
DNA (1212bp) protein (404aa)
deoxyhypusine synthase; K00809 deoxyhypusine synthase [EC:2.5.1.46] Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
Deoxyhypusine synthase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q029V5_SOLUE
deoxyhypusine synthase
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_4776_26
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

23572..24435
DNA (864bp) protein (288aa)
mechanosensitive ion channel protein MscS; K03442 small conductance mechanosensitive channel Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
Potassium efflux system KefA protein / Small-conductance mechanosensitive channel id=4252684 bin=GWC2_Bacteroidetes_40_22 species=Flavobacterium frigoris genus=Flavobacterium taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWC2_Bacteroidetes_40_22 organism_group=Bacteroidetes
Potassium efflux system KefA protein / Small-conductance mechanosensitive channel
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_4776_27
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

24597..25388
DNA (792bp) protein (264aa)
Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_4776_28
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

25566..27917
DNA (2352bp) protein (784aa)
ptk; phosphoketolase (EC:4.1.2.-) Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
Phosphoketolase (EC:4.1.2.9)
Putative uncharacterized protein id=3736992 bin=GWC2_OD1_43_27 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_4776_29
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

27896..29068
DNA (1173bp) protein (391aa)
ackA2; acetate kinase AckA (EC:2.7.2.1) Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
ackA2; acetate kinase AckA (EC:2.7.2.1)
Acetate kinase id=3736994 bin=GWC2_OD1_43_27 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_4776_30
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

29211..29351
DNA (141bp) protein (47aa)
Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
Displaying items 1-30 of 42 in total

View Taxonomy