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RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_3618

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_3618_1
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

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2..760
DNA (759bp) protein (253aa)
RNA-directed DNA polymerase (Reverse transcriptase) n=1 Tax=uncultured bacterium RepID=K2CJ18_9BACT
RNA-directed DNA polymerase Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
RNA-directed DNA polymerase Reverse transcriptase
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_3618_2
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

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951..2351
DNA (1401bp) protein (467aa)
FAD binding domain-containing protein n=1 Tax=Coccidioides immitis (strain RS) RepID=J3KKK8_COCIM
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_3618_3
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

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2481..3239
DNA (759bp) protein (253aa)
Predicted hydrolase (Haloacid dehalogenase (HAD) superfamily protein) n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2CDM5_9RHOB
Predicted hydrolase (Haloacid dehalogenase (HAD) superfamily protein) Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_3618_4
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

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3182..4276
DNA (1095bp) protein (365aa)
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_3618_5
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

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4273..4593
DNA (321bp) protein (107aa)
Putative uncharacterized protein n=1 Tax=Methanococcus maripaludis (strain S2 / LL) RepID=Q6LZ72_METMP
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_3618_6
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

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4759..7809
DNA (3051bp) protein (1017aa)
hypothetical protein n=2 Tax=Aminicenantes RepID=UPI0003758109
wd40-like beta propeller containing protein Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
wd40-like beta propeller containing protein
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_3618_7
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

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7931..8545
DNA (615bp) protein (205aa)
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_3618_8
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

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8547..9788
DNA (1242bp) protein (414aa)
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_3618_9
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

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9900..11723
DNA (1824bp) protein (608aa)
DNA primase; K02316 DNA primase [EC:2.7.7.-] Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
DNA primase id=1915994 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_3618_10
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

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11755..12960
DNA (1206bp) protein (402aa)
RNA polymerase sigma-70 subunit RpoD; K03086 RNA polymerase primary sigma factor Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
RNA polymerase sigma factor id=1915996 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
RNA polymerase sigma-70 subunit RpoD
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_3618_11
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

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12992..14656
DNA (1665bp) protein (555aa)
RND family efflux transporter MFP subunit; K02005 HlyD family secretion protein Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
efflux transporter, RND family, MFP subunit id=15190406 bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete
RND family efflux transporter MFP subunit
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_3618_12
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

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14671..15393
DNA (723bp) protein (241aa)
ABC-type antimicrobial peptide transport system ATPase component; K02003 putative ABC transport system ATP-binding protein Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
Macrolide export ATP-binding/permease protein MacB id=3736880 bin=GWC2_OD1_43_27 species=PER_GWA2_38_35 genus=PER_GWA2_38_35 taxon_order=PER_GWA2_38_35 taxon_class=PER_GWA2_38_35 phylum=PER tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
antimicrobial peptide ABC transporter ATPase
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_3618_13
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

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15418..16656
DNA (1239bp) protein (413aa)
hypothetical protein; K02004 putative ABC transport system permease protein Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
hypothetical protein; K02004 putative ABC transport system permease protein id=5095695 bin=PER_GWF2_38_29 species=PER_GWF2_38_31 genus=PER_GWF2_38_31 taxon_order=PER_GWF2_38_31 taxon_class=PER_GWF2_38_31 phylum=PER tax=PER_GWF2_38_29 organism_group=PER (Peregrinibacteria)
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_3618_14
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

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comp(16762..17352)
DNA (591bp) protein (197aa)
thymidine kinase (EC:2.7.1.21); K00857 thymidine kinase [EC:2.7.1.21] Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
Thymidine kinase n=5 Tax=Mycoplasma hyorhinis RepID=E0TLC8_MYCHH
tdk; Thymidine kinase
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_3618_15
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

17542..17799
DNA (258bp) protein (86aa)
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
Putative uncharacterized protein id=3285206 bin=GWA2_Elusimicrobia_66_18 species=Bdellovibrio bacteriovorus genus=Bdellovibrio taxon_order=Bdellovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Elusimicrobia_66_18 organism_group=Elusimicrobia organism_desc=Part of new group in this phylum
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_3618_16
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

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comp(17864..18328)
DNA (465bp) protein (155aa)
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
Putative uncharacterized protein id=4525629 bin=GWC2_TM7_48_9 species=Algoriphagus machipongonensis genus=Algoriphagus taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWC2_TM7_48_9 organism_group=TM7 organism_desc=Good
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_3618_17
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

18416..19018
DNA (603bp) protein (201aa)
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_3618_18
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

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comp(19034..19561)
DNA (528bp) protein (176aa)
id=5046752 Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
id=5046752 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_3618_19
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(19574..19972)
DNA (399bp) protein (133aa)
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
Putative uncharacterized protein id=4649120 bin=GWA2_OP3_52_12 species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_3618_20
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

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comp(19992..20468)
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2ENM0_9BACT
translocator protein Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
tspO; Tryptophan-rich sensory protein
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_3618_21
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

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comp(20529..20882)
DNA (354bp) protein (118aa)
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_3618_22
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

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comp(21047..21670)
DNA (624bp) protein (208aa)
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_3618_23
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

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21791..21880
DNA (90bp) protein (30aa)
Phosphoglycerate mutase domain-containing protein n=1 Tax=Polysphondylium pallidum RepID=D3AWJ7_POLPA
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_3618_24
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

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comp(22314..23141)
DNA (828bp) protein (276aa)
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
Phosphoglycerate mutase family protein
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_3618_25

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23373..24389
DNA (1017bp) protein (339aa)
id=4241918 bin=GWC2_OD1_43_27 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
Uncharacterized protein {ECO:0000313|EMBL:KKS79272.1}; TaxID=1618624 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Azambacteria) bacterium GW2011_GWE1_42_9.;"
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_3618_26
unknown

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24565..25038
DNA (474bp) protein (158aa)

This feature has no annotations

RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_3618_27
Parcubacteria bacterium GW2011_GWA2_52_8, Parcubacteria, Bacteria

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25062..25883
DNA (822bp) protein (274aa)
Type IV-A pilus assembly ATPase PilB n=1 Tax=Luminiphilus syltensis NOR5-1B RepID=B8KR37_9GAMM
GspE3 {ECO:0000313|EMBL:KKW28375.1}; Flags: Fragment;; TaxID=1618857 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_52_8.;"
pilB; type II secretion system protein E
Displaying 27 items

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