ggKbase home page

RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_6222

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_6222_1
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(527..1126)
DNA (600bp) protein (200aa)
LAGLIDADG DNA endonuclease n=1 Tax=Geobacillus thermoglucosidasius (strain C56-YS93) RepID=F8CXU4_GEOTC id=5086962 bin=GWF1_OP11_31_35_complete species=Geobacillus thermoglucosidasius genus=Geobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF1_OP11_31_35_complete organism_group=OP11 (Microgenomates) organism_desc=Complete genome (was OP11_1)
homing endonuclease Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
homing endonuclease
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_6222_2
GWA2_OD1_44_9, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

2653..3690
DNA (1038bp) protein (346aa)
Site-2 protease n=1 Tax=Calditerrivibrio nitroreducens (strain DSM 19672 / NBRC 101217 / Yu37-1) RepID=E4THF7_CALNY
Site-2 protease {ECO:0000313|EMBL:KKT80921.1}; TaxID=1619025 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Yanofskybacteria) bacterium GW2011_GWA2_44_9.;"
site-2 protease
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_6222_3
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(3735..4442)
DNA (708bp) protein (236aa)
trmD; tRNA (guanine-N1)-methyltransferase (EC:2.1.1.31); K00554 tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
trmD; tRNA (guanine-N1)-methyltransferase (EC:2.1.1.31)
tRNA (guanine-N(1)-)-methyltransferase id=2185696 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_6222_4
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

4518..4805
DNA (288bp) protein (96aa)
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_6222_5
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(4878..5744)
DNA (867bp) protein (289aa)
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_6222_6
GWA2_OD1_44_9, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(5988..6359)
DNA (372bp) protein (124aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT80926.1}; TaxID=1619025 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Yanofskybacteria) bacterium GW2011_GWA2_44_9.;"
UPF0109 protein LDC_0451 id=2185702 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_6222_7
GWA2_OD1_44_9, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists


comp(6452..9355)
DNA (2904bp) protein (968aa)
leuS; leucyl-tRNA synthetase (EC:6.1.1.4); K01869 leucyl-tRNA synthetase [EC:6.1.1.4] id=15190186 bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete
leuS; leucyl-tRNA ligase LeuS (EC:6.1.1.4)
Leucyl-tRNA ligase LeuS {ECO:0000313|EMBL:KKT80927.1}; TaxID=1619025 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Yanofskybacteria) bacterium GW2011_GWA2_44_9.;"
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_6222_8
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(9416..9973)
DNA (558bp) protein (186aa)
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_6222_9
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(10077..10886)
DNA (810bp) protein (270aa)
TatD family hydrolase Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
Sec-independent protein TatD id=2185710 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
TatD family hydrolase
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_6222_10
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

10944..11330
DNA (387bp) protein (129aa)
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_6222_11
GWA2_OD1_44_9, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists


comp(11376..12872)
DNA (1497bp) protein (499aa)
Methionine-tRNA ligase {ECO:0000313|EMBL:KKT80931.1}; TaxID=1619025 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Yanofskybacteria) bacterium GW2011_GWA2_44_9.;"
Methionine--tRNA ligase id=2185712 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
methionyl-tRNA synthetase
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_6222_12
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(12862..13683)
DNA (822bp) protein (274aa)
coiled-coil 241..269 Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
coiled-coil 241..269 id=83785 bin=ACD56 species=ACD56 genus=ACD56 taxon_order=ACD56 taxon_class=ACD56 phylum=OD1-i tax=ACD56 organism_group=OD1-i organism_desc=OD1-i
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_6222_13
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(13685..14155)
DNA (471bp) protein (157aa)
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_6222_14
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(14201..14440)
DNA (240bp) protein (80aa)
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_6222_15
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(14442..15119)
DNA (678bp) protein (226aa)
uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; K07056 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
uroporphyrin-III C/tetrapyrrole methyltransferase id=2185714 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_6222_16
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(15377..16456)
DNA (1080bp) protein (360aa)
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
Conserved hypothetical membrane protein id=2185716 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_6222_17
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(16467..17750)
DNA (1284bp) protein (428aa)
peptidase M16 domain-containing protein Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
Processing peptidase id=2185718 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
peptidase M16 domain-containing protein
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_6222_18
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(17841..18539)
DNA (699bp) protein (233aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2CI89_9BACT
Uncharacterized protein Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_6222_19
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(18946..19458)
DNA (513bp) protein (171aa)
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
Displaying 19 items

View Taxonomy