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RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_383

Search features with annotation key words

Displaying items 1-30 of 93 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_383_1
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(1..216)
DNA (216bp) protein (72aa)
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_383_2
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(393..2231)
DNA (1839bp) protein (613aa)
glmS; Glucosamine 6-phosphate synthetase; K00820 glucosamine--fructose-6-phosphate aminotransferase (isomerizing) [EC:2.6.1.16] Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] n=1 Tax=uncultured bacterium RepID=K2G5H5_9BACT
Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_383_3
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists


comp(2510..2830)
DNA (321bp) protein (107aa)
rpsP; ribosomal protein S16; K02959 small subunit ribosomal protein S16 Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
30S ribosomal protein S16 id=1924344 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
rpsP; 30S ribosomal protein S16
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_383_4
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(2870..3235)
DNA (366bp) protein (122aa)
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_383_5
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(3249..3383)
DNA (135bp) protein (45aa)
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_383_6
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(3415..4107)
DNA (693bp) protein (231aa)
putative ribonuclease III (EC:3.1.26.3) Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
Ribonuclease 3 id=1924346 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_383_7
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(4218..4721)
DNA (504bp) protein (168aa)
putative transcription termination factor Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
N utilization substance protein B homolog id=1924348 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
putative transcription termination factor
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_383_8
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists


comp(4826..5047)
DNA (222bp) protein (74aa)
rpmF; 50S ribosomal protein L32; K02911 large subunit ribosomal protein L32 Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
50S ribosomal protein L32 id=1924350 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
rpmF; 50S ribosomal protein L32
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_383_9
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(5178..5789)
DNA (612bp) protein (204aa)
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_383_10
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

5985..9212
DNA (3228bp) protein (1076aa)
DNA polymerase III catalytic subunit, DnaE type; K02337 DNA polymerase III subunit alpha [EC:2.7.7.7] Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
DNA polymerase III catalytic subunit, DnaE type (EC:2.7.7.7)
DNA polymerase III, alpha subunit id=1924352 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_383_11
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(9328..9693)
DNA (366bp) protein (122aa)
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_383_12
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

9824..11563
DNA (1740bp) protein (580aa)
thrZ; threonyl-tRNA synthetase (EC:6.1.1.3) Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
cpi:Cpin_3742 thrS; threonyl-tRNA synthetase (EC:6.1.1.3); K01868 threonyl-tRNA synthetase [EC:6.1.1.3] id=53246 bin=ACD41 species=ACD41 genus=ACD41 taxon_order=ACD41 taxon_class=ACD41 phylum=OD1 tax=ACD41 organism_group=OD1 (Parcubacteria) organism_desc=OD1
thrZ; threonyl-tRNA synthetase (EC:6.1.1.3)
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_383_13
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(11575..12261)
DNA (687bp) protein (229aa)
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_383_14
GWA2_OD1_44_9, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

12312..13334
DNA (1023bp) protein (341aa)
miaA; tRNA Delta(2)-isopentenylpyrophosphate transferase MiaA (EC:2.5.1.75)
tRNA dimethylallyltransferase {ECO:0000313|EMBL:KKT80994.1}; TaxID=1619025 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Yanofskybacteria) bacterium GW2011_GWA2_44_9.;"
tRNA dimethylallyltransferase id=1924361 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_383_15
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(13325..13555)
DNA (231bp) protein (77aa)
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_383_16
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(13560..15086)
DNA (1527bp) protein (509aa)
glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, B subunit Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B id=1924364 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, B subunit
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_383_17
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(15252..16169)
DNA (918bp) protein (306aa)
thyX; FAD-dependent thymidylate synthase (EC:2.1.1.148); K03465 thymidylate synthase (FAD) [EC:2.1.1.148] Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
thyX; FAD-dependent thymidylate synthase (EC:2.1.1.148)
Thymidylate synthase ThyX id=1924366 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_383_18
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(16255..16932)
DNA (678bp) protein (226aa)
dTMP kinase (EC:2.7.4.9); K00943 dTMP kinase [EC:2.7.4.9] Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
dTMP kinase (EC:2.7.4.9)
id=1924368 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_383_19
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists


comp(17539..17982)
DNA (444bp) protein (148aa)
50S ribosomal protein L11; K02867 large subunit ribosomal protein L11 Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
50S ribosomal protein L11 id=1924369 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
50S ribosomal protein L11
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_383_20
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(18133..18678)
DNA (546bp) protein (182aa)
nusG; transcription antitermination factor Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
Transcription antitermination protein nusG id=1924371 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
nusG; transcription antitermination factor
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_383_21
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(18680..18865)
DNA (186bp) protein (62aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI00037E20C3
preprotein translocase subunit SecE; K03073 preprotein translocase subunit SecE Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
preprotein translocase subunit SecE
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_383_22
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(19207..19899)
DNA (693bp) protein (231aa)
pyrH; uridylate kinase; K09903 uridylate kinase [EC:2.7.4.22] Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
Uridylate kinase n=1 Tax=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) RepID=PYRH_PROMP
pyrH; uridylate kinase
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_383_23
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(19927..22050)
DNA (2124bp) protein (708aa)
gyrB; DNA gyrase subunit B; K02470 DNA gyrase subunit B [EC:5.99.1.3] Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
DNA gyrase subunit B id=1924373 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
gyrB; DNA gyrase subunit B
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_383_24
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists


comp(22248..23378)
DNA (1131bp) protein (377aa)
phenylalanine-trna synthetase-like protein (EC:6.1.1.20); K01889 phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI0003827B7C
phenylalanyl-tRNA synthetase alpha chain
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_383_25
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(23371..23580)
DNA (210bp) protein (70aa)
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_383_26
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(23873..24601)
DNA (729bp) protein (243aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2FF41_9BACT
intein-containing protein Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
intein-containing protein
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_383_27
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(24622..26079)
DNA (1458bp) protein (486aa)
guaB; inosine-5'-monophosphate dehydrogenase (EC:1.1.1.205) Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
Inosine-5'-monophosphate dehydrogenase id=3526261 bin=GWA2_Elusimicrobia_66_18 species=Candidatus Nitrososphaera gargensis genus=Nitrososphaera taxon_order=Nitrososphaerales taxon_class=unknown phylum=Thaumarchaeota tax=GWA2_Elusimicrobia_66_18 organism_group=Elusimicrobia organism_desc=Part of new group in this phylum
Inosine-5'-monophosphate dehydrogenase
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_383_28
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(26216..26680)
DNA (465bp) protein (155aa)
id=1924383 Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
id=1924383 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_383_29
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(26823..29261)
DNA (2439bp) protein (813aa)
RHS repeat-associated core domain protein Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
RHS repeat-associated core domain-containing protein id=5102320 bin=GWF1_WS6_37_7 species=WS6_GWF1_36_7 genus=WS6_GWF1_36_7 taxon_order=WS6_GWF1_36_7 taxon_class=WS6_GWF1_36_7 phylum=WS6 tax=GWF1_WS6_37_7 organism_group=WS6 (Doikabacteria)
RHS repeat-associated core domain protein
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_383_30
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(29328..30824)
DNA (1497bp) protein (499aa)
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
Displaying items 1-30 of 93 in total

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