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RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_3394

Search features with annotation key words

Displaying items 1-30 of 49 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_3394_1
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

2..277
DNA (276bp) protein (92aa)
Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_3394_2
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(332..1186)
DNA (855bp) protein (285aa)
Histidine phosphatase superfamily, clade-1 Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
Histidine phosphatase superfamily, clade-1 id=5227470 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_3394_3
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(1174..2259)
DNA (1086bp) protein (362aa)
Protein kinase-like (PK-like) Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
Protein kinase-like (PK-like) id=123805 bin=ACD78 species=ACD78 genus=ACD78 taxon_order=ACD78 taxon_class=ACD78 phylum=BD1-5 tax=ACD78 organism_group=BD1-5 (Gracilibacteria) organism_desc=BD1-5
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_3394_4
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(2495..2713)
DNA (219bp) protein (73aa)
Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_3394_5
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(3185..4600)
DNA (1416bp) protein (472aa)
gatA; Aspartyl-tRNA(Asn) amidotransferase subunit A, Glutamyl-tRNA(Gln) amidotransferase subunit A (EC:6.3.5.6 6.3.5.7) Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
gatA; Aspartyl-tRNA(Asn) amidotransferase subunit A, Glutamyl-tRNA(Gln) amidotransferase subunit A (EC:6.3.5.6 6.3.5.7)
Glutamyl-tRNA(Gln) amidotransferase subunit A id=2648831 bin=GWC1_OD1_38_17 species=ACD81 genus=ACD81 taxon_order=ACD81 taxon_class=ACD81 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_3394_6
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(4597..4890)
DNA (294bp) protein (98aa)
glutamyl-tRNA(Gln) amidotransferase subunit C; K02435 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C n=1 Tax=Veillonella sp. oral taxon 158 str. F0412 RepID=E4LCE6_9FIRM
glutamyl-tRNA(Gln) amidotransferase subunit C
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_3394_7
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(4974..6995)
DNA (2022bp) protein (674aa)
NAD-dependent DNA ligase (EC:6.5.1.2); K01972 DNA ligase (NAD+) [EC:6.5.1.2] Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
NAD-dependent DNA ligase (EC:6.5.1.2)
DNA ligase id=3594477 bin=GWA1_ZB2_49_26 species=ACD58_39_12 genus=ACD58_39_12 taxon_order=ACD58_39_12 taxon_class=ACD58_39_12 phylum=ACD58 tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_3394_8
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(7092..7697)
DNA (606bp) protein (202aa)
Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_3394_9
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(7711..8319)
DNA (609bp) protein (203aa)
Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_3394_10
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(8316..11366)
DNA (3051bp) protein (1017aa)
Transport protein ExbB2 n=1 Tax=sediment metagenome RepID=D9PHJ6_9ZZZZ
hypothetical protein Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_3394_11
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(11393..12178)
DNA (786bp) protein (262aa)
pilD; type IV prepilin peptidase; K02654 leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
Prepilin peptidase-1 n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PXW4_9BACT
pilD; type IV prepilin peptidase
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_3394_12
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(12252..12719)
DNA (468bp) protein (156aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2CQG4_9BACT
hypothetical protein
Uncharacterized protein Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_3394_13
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(12929..13444)
DNA (516bp) protein (172aa)
hypothetical protein Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
gspG; T2SS protein G; K02456 general secretion pathway protein G id=5803077 bin=OD1_GWC2_34_28 species=unknown genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_3394_14
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(13620..14828)
DNA (1209bp) protein (403aa)
type II secretion system F domain-containing protein; K02653 type IV pilus assembly protein PilC Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
Type II secretion system F domain; K02653 type IV pilus assembly protein PilC id=5803078 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
type II secretion system F domain-containing protein
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_3394_15
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(14873..15937)
DNA (1065bp) protein (355aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI000373007F
twitching motility protein; K02669 twitching motility protein PilT Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
twitching motility protein
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_3394_16
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(15943..16344)
DNA (402bp) protein (134aa)
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
two component transcriptional regulator; K02483 two-component system, OmpR family, response regulator id=5803080 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_3394_17
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(16352..18070)
DNA (1719bp) protein (573aa)
putative type II secretion system protein E Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
general secretion pathway protein E id=5803081 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
putative type II secretion system protein E
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_3394_18
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(18076..18384)
DNA (309bp) protein (103aa)
Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_3394_19
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(18381..18917)
DNA (537bp) protein (179aa)
Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_3394_20
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(18933..19580)
DNA (648bp) protein (216aa)
Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_3394_21
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(19907..21019)
DNA (1113bp) protein (371aa)
type IV pilus assembly protein PilM; K02662 type IV pilus assembly protein PilM Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
Type IV pilus assembly protein PilM; K02662 type IV pilus assembly protein PilM id=5803086 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_3394_22
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

21098..21811
DNA (714bp) protein (238aa)
ComFC; amidophosphoribosyltransferase Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
amidophosphoribosyltransferase-like protein id=136624 bin=ACD8 species=ACD8 genus=ACD8 taxon_order=ACD8 taxon_class=ACD8 phylum=OD1-i tax=ACD8 organism_group=OD1-i organism_desc=OD1-i
ComFC; amidophosphoribosyltransferase
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_3394_23
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

21835..22764
DNA (930bp) protein (310aa)
thymidylate synthase; K00560 thymidylate synthase [EC:2.1.1.45] Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
Thymidylate synthase n=1 Tax=Owenweeksia hongkongensis (strain DSM 17368 / JCM 12287 / NRRL B-23963) RepID=G8R1X1_OWEHD
thymidylate synthase
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_3394_24
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

22761..23270
DNA (510bp) protein (170aa)
dfrA; dihydrofolate reductase DfrA (EC:1.5.1.3) Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
dihydrofolate reductase n=1 Tax=Bacillus sp. 10403023 RepID=UPI000288B788
dihydrofolate reductase
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_3394_25
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(23352..24098)
DNA (747bp) protein (249aa)
Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_3394_26
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(24252..24368)
DNA (117bp) protein (39aa)
glyoxalase; K06996 Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
glyoxalase/bleomycin resistance protein/dioxygenase; K06996 id=5049693 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
glyoxalase
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_3394_27
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(24386..26212)
DNA (1827bp) protein (609aa)
GTP-binding protein TypA/BipA Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
GTP-binding protein typa; K06207 GTP-binding protein id=5803640 bin=OD1_GWC2_34_28 species=ACD81 genus=ACD81 taxon_order=ACD81 taxon_class=ACD81 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
GTP-binding protein TypA/BipA
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_3394_28
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(26456..27019)
DNA (564bp) protein (188aa)
Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_3394_29
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(27310..28131)
DNA (822bp) protein (274aa)
coiled-coil 54..75 Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
coiled-coil 54..75 id=5541 bin=ACD12 species=ACD12 genus=ACD12 taxon_order=ACD12 taxon_class=ACD12 phylum=OP11 tax=ACD12 organism_group=OP11 (Microgenomates) organism_desc= OP11
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_3394_30
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(28317..29072)
DNA (756bp) protein (252aa)
Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
Displaying items 1-30 of 49 in total

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