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RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_119

Search features with annotation key words

Displaying items 61-90 of 119 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_119_61
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

58610..59773
DNA (1164bp) protein (388aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2FZM5_9BACT
hypothetical protein Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
exonuclease
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_119_62
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(59787..60137)
DNA (351bp) protein (117aa)
transmembrane_regions Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
transmembrane_regions id=5227015 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_119_63
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists


60225..60497
DNA (273bp) protein (91aa)
rpmA; 50S ribosomal protein L27; K02899 large subunit ribosomal protein L27 Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
50S ribosomal protein L25; K02899 large subunit ribosomal protein L27 id=5803508 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
rpmA; 50S ribosomal protein L27
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_119_64
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(60639..60866)
DNA (228bp) protein (76aa)
Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_119_65
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(61060..61545)
DNA (486bp) protein (162aa)
Putative uncharacterized protein n=1 Tax=uncultured Desulfobacterium sp. RepID=E1YE86_9DELT
cytidyltransferase-related enzyme Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
cytidyltransferase-related enzyme
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_119_66
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(61616..62083)
DNA (468bp) protein (156aa)
branched-chain amino acid aminotransferase; K00826 branched-chain amino acid aminotransferase [EC:2.6.1.42] Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
Branched-chain amino acid aminotransferase (IlvE) n=1 Tax=Vulcanisaeta moutnovskia (strain 768-28) RepID=F0QW25_VULM7
branched-chain amino acid aminotransferase
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_119_67
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(62088..62504)
DNA (417bp) protein (139aa)
branched-chain amino acid aminotransferase (EC:2.6.1.42); K00826 branched-chain amino acid aminotransferase [EC:2.6.1.42] Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
UniRef90_C6N645 Branched-chain amino acid aminotransferase n=1 Tax=Legionella drancourtii LLAP12 RepID=C6N645_9GAMM id=73065 bin=ACD51 species=Legionella drancourtii genus=Legionella taxon_order=Legionellales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=ACD51 organism_group=PER (Peregrinibacteria) organism_desc=PER
ilvE; Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_119_68
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(62539..63258)
DNA (720bp) protein (240aa)
type II secretion system protein G; K02456 general secretion pathway protein G Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
transmembrane_regions 13..35 id=32516 bin=ACD28 species=ACD28 genus=ACD28 taxon_order=ACD28 taxon_class=ACD28 phylum=PER tax=ACD28 organism_group=PER (Peregrinibacteria) organism_desc=PER
fimbrial protein pilin
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_119_69
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(63707..64453)
DNA (747bp) protein (249aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2E932_9BACT
Uncharacterized protein Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_119_70
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(64446..65762)
DNA (1317bp) protein (439aa)
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (EC:6.3.2.10); K01929 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase [EC:6.3.2.10] id=3152185 bin=GWC1_OD1_38_17 species=ACD9 genus=ACD9 taxon_order=ACD9 taxon_class=ACD9 phylum=OD1-i tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_119_71
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(65759..67453)
DNA (1695bp) protein (565aa)
peptidoglycan glycosyltransferase (EC:2.4.1.129); K03587 cell division protein FtsI (penicillin-binding protein 3) [EC:2.4.1.129] Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
peptidoglycan glycosyltransferase (EC:2.4.1.129)
Uncharacterized protein n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PVQ2_9BACT
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_119_72
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(67500..67799)
DNA (300bp) protein (100aa)
Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_119_73
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(67796..68695)
DNA (900bp) protein (300aa)
S-adenosyl-methyltransferase MraW; K03438 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
Ribosomal RNA small subunit methyltransferase H id=3544380 bin=GWA1_ZB2_49_26 species=ACD63 genus=ACD63 taxon_order=ACD63 taxon_class=ACD63 phylum=OD1 tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
S-adenosyl-methyltransferase MraW
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_119_74
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(68701..69135)
DNA (435bp) protein (145aa)
cell division protein MraZ; K03925 MraZ protein Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
Protein mraZ id=3152174 bin=GWC1_OD1_38_17 species=ACD11 genus=ACD11 taxon_order=ACD11 taxon_class=ACD11 phylum=OD1-i tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
cell division protein MraZ
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_119_75
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(69433..70896)
DNA (1464bp) protein (488aa)
lysyl-tRNA synthetase; K04567 lysyl-tRNA synthetase, class II [EC:6.1.1.6] Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00036EEE74
lysyl-tRNA synthetase
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_119_76
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(70915..71433)
DNA (519bp) protein (173aa)
greA1; transcription elongation factor; K03624 transcription elongation factor GreA Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
Transcription elongation factor GreA id=3012689 bin=GWC1_OD1_38_17 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
greA1; transcription elongation factor
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_119_77
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(71531..73267)
DNA (1737bp) protein (579aa)
penicillin-binding protein 2 (EC:2.4.1.129); K05515 penicillin-binding protein 2 Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
penicillin-binding protein 2 (EC:2.4.1.129)
penicillin-binding protein 2; K05515 penicillin-binding protein 2 id=5803382 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_119_78
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(73239..73664)
DNA (426bp) protein (142aa)
Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_119_79
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(73669..74427)
DNA (759bp) protein (253aa)
Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_119_80
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(74440..75495)
DNA (1056bp) protein (352aa)
rod shape-determining protein MreB; K03569 rod shape-determining protein MreB and related proteins Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
tro:trd_1938 rod shape-determining protein MreB; K03569 rod shape-determining protein MreB and related proteins id=96525 bin=ACD63 species=ACD63 genus=ACD63 taxon_order=ACD63 taxon_class=ACD63 phylum=OD1 tax=ACD63 organism_group=OD1 (Parcubacteria) organism_desc=OD1
rod shape-determining protein MreB
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_119_81
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists


comp(75500..76756)
DNA (1257bp) protein (419aa)
proS; prolyl-tRNA synthetase (EC:6.1.1.15) Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
Proline--tRNA ligase n=1 Tax=Turicibacter sp. PC909 RepID=D4W313_9FIRM id=89237 bin=ACD5 species=Turicibacter sanguinis genus=Turicibacter taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=ACD5 organism_group=OD1-i organism_desc=OD1-i
Prolyl-tRNA synthetase
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_119_82
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(76826..77911)
DNA (1086bp) protein (362aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI000364C39C
membrane-associated zinc metalloprotease Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
membrane-associated zinc metalloprotease
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_119_83
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(77920..78471)
DNA (552bp) protein (184aa)
Ribosome-recycling factor n=1 Tax=uncultured bacterium RepID=K1Z0R3_9BACT
ribosome recycling factor Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
ribosome recycling factor
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_119_84
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(78483..79286)
DNA (804bp) protein (268aa)
DNA polymerase III subunit tau and gamma; K02341 DNA polymerase III subunit delta' [EC:2.7.7.7] Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
Uncharacterized protein n=2 Tax=Bacteria RepID=V5RV56_9BACT
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_119_85
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(79288..80301)
DNA (1014bp) protein (338aa)
rod shape-determining protein MreB; K03569 rod shape-determining protein MreB and related proteins Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
id=5227119 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
rod shape-determining protein MreB
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_119_86
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

80394..81305
DNA (912bp) protein (304aa)
id=3423048 Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
id=3423048 bin=GWA1_ZB2_49_26 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_119_87
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(81312..82601)
DNA (1290bp) protein (430aa)
UDP-N-acetylmuramate--L-alanine ligase (EC:6.3.2.8) Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
tit:Thit_2243 UDP-N-acetylmuramate/alanine ligase; K01924 UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] id=2704 bin=ACD11 species=ACD11 genus=ACD11 taxon_order=ACD11 taxon_class=ACD11 phylum=OD1-i tax=ACD11 organism_group=OD1-i organism_desc=OD1-i
UDP-N-acetylmuramate--L-alanine ligase (EC:6.3.2.8)
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_119_88
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

82646..84535
DNA (1890bp) protein (630aa)
priA; primosomal protein N'; K04066 primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:3.6.4.-] Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
primosomal protein N'; K04066 primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:3.6.4.-] id=5227121 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
priA; primosomal protein N'
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_119_89
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

84542..85084
DNA (543bp) protein (181aa)
peptide deformylase (EC:3.5.1.88); K01462 peptide deformylase [EC:3.5.1.88] Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
peptide deformylase (EC:3.5.1.88)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA040-L21 RepID=UPI00037B497A
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_119_90
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

85081..86043
DNA (963bp) protein (321aa)
methionyl-tRNA formyltransferase; K00604 methionyl-tRNA formyltransferase [EC:2.1.2.9] Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
Methionyl-tRNA formyltransferase n=1 Tax=Thermovibrio ammonificans (strain DSM 15698 / JCM 12110 / HB-1) RepID=E8T3X8_THEA1
methionyl-tRNA formyltransferase
Displaying items 61-90 of 119 in total

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