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RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_395

Search features with annotation key words

Displaying items 31-60 of 67 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_395_31
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

33513..33728
DNA (216bp) protein (72aa)
preprotein translocase subunit SecG; K03075 preprotein translocase subunit SecG Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
transmembrane_regions 13..35 id=120773 bin=ACD76 species=ACD76 genus=ACD76 taxon_order=ACD76 taxon_class=ACD76 phylum=OD1 tax=ACD76 organism_group=OD1 (Parcubacteria) organism_desc=OD1
secG; preprotein translocase, SecG subunit
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_395_32
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

33754..35484
DNA (1731bp) protein (577aa)
putative periplasmic oligopeptide-binding protein of oligopeptide ABC transporter; K02035 peptide/nickel transport system substrate-binding protein Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
family 5 extracellular solute-binding protein; K02035 peptide/nickel transport system substrate-binding protein id=5803423 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
putative periplasmic oligopeptide-binding protein of oligopeptide ABC transporter
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_395_33
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

35923..36180
DNA (258bp) protein (86aa)
Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_395_34
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

36287..38050
DNA (1764bp) protein (588aa)
RNA-metabolising metallo-beta-lactamase; K12574 ribonuclease J [EC:3.1.-.-] Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
RNA-metabolising metallo-beta-lactamase id=1766048 bin=GWE2_OD1_46_68 species=GWE2_OD1_46_68 genus=GWE2_OD1_46_68 taxon_order=GWE2_OD1_46_68 taxon_class=GWE2_OD1_46_68 phylum=OD1 tax=GWE2_OD1_46_68 organism_group=OD1 (Parcubacteria)
RNA-metabolising metallo-beta-lactamase
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_395_35
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

38119..39075
DNA (957bp) protein (319aa)
trpS; tryptophanyl-tRNA synthetase; K01867 tryptophanyl-tRNA synthetase [EC:6.1.1.2] Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
Tryptophan--tRNA ligase id=2670112 bin=GWA1_ZB2_49_26 species=unknown genus=Thermoanaerobacterium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
trpS; tryptophanyl-tRNA synthetase
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_395_36
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(39124..40500)
DNA (1377bp) protein (459aa)
glmM; phosphomannomutase; K01840 phosphomannomutase [EC:5.4.2.8] Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
Phosphomannomutase n=1 Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9L0V7_THERP
glmM; phosphomannomutase
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_395_37
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists


40621..41040
DNA (420bp) protein (140aa)
hypothetical protein n=1 Tax=candidate division OP9 bacterium OP9-cSCG RepID=UPI00037CF0E5
rpsF; 30S ribosomal protein S6; K02990 small subunit ribosomal protein S6 Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
rpsF; 30S ribosomal protein S6
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_395_38
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

41203..41634
DNA (432bp) protein (144aa)
single-strand binding protein; K03111 single-strand DNA-binding protein Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
single-strand binding protein; K03111 single-strand DNA-binding protein id=5803295 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
ssb; Single-stranded DNA-binding protein
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_395_39
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists


41736..41948
DNA (213bp) protein (71aa)
30S ribosomal protein S18 n=1 Tax=Granulicatella adiacens ATCC 49175 RepID=C8NI08_9LACT
30S ribosomal protein S18; K02963 small subunit ribosomal protein S18 Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
30S ribosomal protein S18
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_395_40
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists


comp(42026..43021)
DNA (996bp) protein (332aa)
RecA protein; K03553 recombination protein RecA Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
protein recA; K03553 recombination protein RecA id=5803301 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
recombinase A
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_395_41
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(43138..43521)
DNA (384bp) protein (128aa)
Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_395_42
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(43508..45691)
DNA (2184bp) protein (728aa)
putative cell division FtsK/SpoIIIE Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
Cell divisionFtsK/SpoIIIE id=4790083 bin=GWC2_OD1_43_27 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
putative cell division FtsK/SpoIIIE
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_395_43
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(45830..49420)
DNA (3591bp) protein (1197aa)
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6); K03046 DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA010-E09 RepID=UPI00037A4755
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_395_44
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(49429..52656)
DNA (3228bp) protein (1076aa)
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6); K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA010-E09 RepID=UPI00037C611A
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_395_45
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

52919..53122
DNA (204bp) protein (68aa)
Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_395_46
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(53094..54005)
DNA (912bp) protein (304aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI0003796D66
protein-export membrane protein SecF; K03074 preprotein translocase subunit SecF Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
protein-export membrane protein SecF
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_395_47
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(54010..55314)
DNA (1305bp) protein (435aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI000361ED4C
protein-export membrane protein SecD; K03072 preprotein translocase subunit SecD Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
protein-export membrane protein SecD
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_395_48
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(55346..55975)
DNA (630bp) protein (210aa)
tmk; thymidylate kinase (EC:2.7.4.9); K00943 dTMP kinase [EC:2.7.4.9] Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
tmk; thymidylate kinase (EC:2.7.4.9)
Thymidylate kinase n=1 Tax=Synechococcus sp. (strain JA-2-3B'a(2-13)) RepID=KTHY_SYNJB
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_395_49
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists


comp(56089..56514)
DNA (426bp) protein (142aa)
rplK; 50S ribosomal protein L11; K02867 large subunit ribosomal protein L11 Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
rplK; 50S ribosomal protein L11; K02867 large subunit ribosomal protein L11 id=9043 bin=ACD15 species=ACD15 genus=ACD15 taxon_order=ACD15 taxon_class=ACD15 phylum=OD1-i tax=ACD15 organism_group=OD1-i organism_desc=OD1-i
rplK; 50S ribosomal protein L11
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_395_50
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(56743..57288)
DNA (546bp) protein (182aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA010-E09 RepID=UPI000366B9C3
nusG; transcription antitermination factor Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
Transcription termination/antitermination protein nusG
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_395_51
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(57429..57614)
DNA (186bp) protein (62aa)
transmembrane_regions 30..52 Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
transmembrane_regions 30..52 id=2871 bin=ACD11 species=ACD11 genus=ACD11 taxon_order=ACD11 taxon_class=ACD11 phylum=OD1-i tax=ACD11 organism_group=OD1-i organism_desc=OD1-i
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_395_52
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(57694..59709)
DNA (2016bp) protein (672aa)
gyrB; DNA gyrase subunit B; K02470 DNA gyrase subunit B [EC:5.99.1.3] Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI000361FCA2
gyrB; DNA gyrase subunit B
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_395_53
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(59786..61825)
DNA (2040bp) protein (680aa)
phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20); K01890 phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00036FB867
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_395_54
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists


comp(61995..63053)
DNA (1059bp) protein (353aa)
pheS; phenylalanyl-tRNA synthetase subunit alpha (EC:6.1.1.20); K01889 phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
pheS; phenylalanyl-tRNA synthetase subunit alpha (EC:6.1.1.20)
Phenylalanyl-tRNA synthetase, alpha subunit id=3423033 bin=GWA1_ZB2_49_26 species=ACD56 genus=ACD56 taxon_order=ACD56 taxon_class=ACD56 phylum=OD1-i tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_395_55
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

63298..63660
DNA (363bp) protein (121aa)
two component response regulator Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
Response regulator receiver protein id=2966076 bin=GWA1_ZB2_49_26 species=Pseudogulbenkiania ferrooxidans genus=Pseudogulbenkiania taxon_order=Neisseriales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
Two component transcriptional regulator, winged helix
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_395_56
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(63671..66220)
DNA (2550bp) protein (850aa)
ATPase AAA-2 domain-containing protein; K03696 ATP-dependent Clp protease ATP-binding subunit ClpC Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
clp protease ATP binding subunit id=1263222 bin=GWE1_ACD58_39_12 species=ACD58_39_12 genus=ACD58_39_12 taxon_order=ACD58_39_12 taxon_class=ACD58_39_12 phylum=ACD58 tax=GWE1_ACD58_39_12 organism_group=ACD58 (Berkelbacteria) organism_desc=Replace with complete genome
Clp protease ATP-binding protein
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_395_57
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(66230..66619)
DNA (390bp) protein (130aa)
id=3544384 Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
id=3544384 bin=GWA1_ZB2_49_26 species=Pyramidobacter piscolens genus=Pyramidobacter taxon_order=Synergistales taxon_class=Synergistia phylum=Synergistetes tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_395_58
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(66718..67476)
DNA (759bp) protein (253aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2CW76_9BACT
putative F420-0--gamma-glutamyl ligase Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
putative F420-0--gamma-glutamyl ligase
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_395_59
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

67504..67704
DNA (201bp) protein (67aa)
Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_395_60
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

67706..67927
DNA (222bp) protein (74aa)
id=1743920 Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_44_230_curated
id=1743920 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
Displaying items 31-60 of 67 in total

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