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RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_2829

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_2829_1
R_OD1_Giovannonibacteria_45_140, Giovannonibacteria, Parcubacteria, Bacteria

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comp(2..103)
DNA (102bp) protein (34aa)
Tax=RIFCSPLOWO2_01_FULL_OD1_Giovannonibacteria_45_140_curated
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_2829_2

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comp(359..649)
DNA (291bp) protein (97aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT57313.1}; TaxID=1618652 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWB1_44_23.;"
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_2829_3

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comp(687..1166)
DNA (480bp) protein (160aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT57314.1}; TaxID=1618652 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWB1_44_23.;"
hypothetical protein id=68921 bin=ACD49 species=ACD49 genus=ACD49 taxon_order=ACD49 taxon_class=ACD49 phylum=BD1-5 tax=ACD49 organism_group=BD1-5 (Gracilibacteria) organism_desc=BD1-5
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_2829_4
R_OD1_Giovannonibacteria_45_140, Giovannonibacteria, Parcubacteria, Bacteria

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comp(1214..2011)
DNA (798bp) protein (266aa)
hypothetical protein n=1 Tax=Microgenomates bacterium SCGC AAA040-P11 RepID=UPI0003819159
Dam-replacing family protein Tax=RIFCSPLOWO2_01_FULL_OD1_Giovannonibacteria_45_140_curated
Dam-replacing family protein
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_2829_5

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comp(2021..2503)
DNA (483bp) protein (161aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT57316.1}; TaxID=1618652 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWB1_44_23.;"
id=2648850 bin=GWC1_OD1_38_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_2829_6
R_OD1_Giovannonibacteria_45_140, Giovannonibacteria, Parcubacteria, Bacteria

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comp(2587..2874)
DNA (288bp) protein (96aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA010-E09 RepID=UPI00037A37D7
hypothetical protein Tax=RIFCSPLOWO2_01_FULL_OD1_Giovannonibacteria_45_140_curated
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_2829_7

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comp(2945..3193)
DNA (249bp) protein (83aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT57317.1}; TaxID=1618652 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWB1_44_23.;"
transmembrane_regions id=5801215 bin=GWE2_OD1_42_8 species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=GWE2_OD1_42_8 organism_group=OD1 (Parcubacteria) organism_desc=GW2011_OD1_1 GW2011_A
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_2829_8
R_OD1_Giovannonibacteria_45_140, Giovannonibacteria, Parcubacteria, Bacteria

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3224..3397
DNA (174bp) protein (58aa)
Tax=RIFCSPLOWO2_01_FULL_OD1_Giovannonibacteria_45_140_curated
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_2829_9

Not on your lists

comp(3508..4077)
DNA (570bp) protein (190aa)
UPF0314 protein SI859A1_03519 n=1 Tax=Manganese-oxidizing bacterium (strain SI85-9A1) RepID=Q1YDF7_MOBAS
Uncharacterized protein {ECO:0000313|EMBL:KKT57318.1}; TaxID=1618652 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWB1_44_23.;"
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_2829_10

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comp(4125..4880)
DNA (756bp) protein (252aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT57319.1}; TaxID=1618652 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWB1_44_23.;"
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_2829_11
R_OD1_Giovannonibacteria_45_140, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(5085..6527)
DNA (1443bp) protein (481aa)
PhoH-related ATPase n=1 Tax=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) RepID=B5EEF7_GEOBB
PhoH-like ATPase; K07175 PhoH-like ATPase Tax=RIFCSPLOWO2_01_FULL_OD1_Giovannonibacteria_45_140_curated
PhoH-like ATPase
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_2829_12

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6649..7569
DNA (921bp) protein (307aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT57321.1}; TaxID=1618652 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWB1_44_23.;"
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_2829_13
R_OD1_Giovannonibacteria_45_140, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(7721..8413)
DNA (693bp) protein (231aa)
putative ribonuclease III (EC:3.1.26.3) Tax=RIFCSPLOWO2_01_FULL_OD1_Giovannonibacteria_45_140_curated
Ribonuclease 3 id=1924346 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_2829_14
R_OD1_Giovannonibacteria_45_140, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(8424..9317)
DNA (894bp) protein (298aa)
Uncharacterized protein n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PYA3_9BACT
putative transcription termination factor Tax=RIFCSPLOWO2_01_FULL_OD1_Giovannonibacteria_45_140_curated
putative transcription termination factor
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_2829_15
R_OD1_Giovannonibacteria_45_140, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists


comp(9411..9647)
DNA (237bp) protein (79aa)
50S ribosomal protein L32; K02911 large subunit ribosomal protein L32 Tax=RIFCSPLOWO2_01_FULL_OD1_Giovannonibacteria_45_140_curated
50S ribosomal protein L32 id=5226909 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
50S ribosomal protein L32
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_2829_16

Not on your lists

comp(9827..10423)
DNA (597bp) protein (199aa)
rnhB; ribonuclease HII; K03470 ribonuclease HII [EC:3.1.26.4] id=5803442 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
ribonuclease H (EC:3.1.26.4)
Ribonuclease HII {ECO:0000313|EMBL:KKT57324.1}; TaxID=1618652 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWB1_44_23.;"
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_2829_17

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10490..11152
DNA (663bp) protein (221aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2BSJ1_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KKT57325.1}; TaxID=1618652 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWB1_44_23.;"
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_2829_18

Not on your lists

comp(11189..11686)
DNA (498bp) protein (166aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT57326.1}; TaxID=1618652 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWB1_44_23.;"
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_2829_19
GWA1_OD1_44_25, Giovannonibacteria, Parcubacteria, Bacteria

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11750..14968
DNA (3219bp) protein (1073aa)
DNA polymerase III subunit alpha (EC:2.7.7.7)
Uncharacterized protein n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PXJ6_9BACT
Polymerase III, alpha subunit protein {ECO:0000313|EMBL:KKT59675.1}; TaxID=1618645 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA1_44_25.;"
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_2829_20

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comp(14978..15394)
DNA (417bp) protein (139aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-J21 RepID=UPI00037AC1EF
Death-on-curing family protein {ECO:0000313|EMBL:KKT57328.1}; TaxID=1618652 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWB1_44_23.;"
death-on-curing family protein
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_2829_21

Not on your lists

comp(15391..15645)
DNA (255bp) protein (85aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-J21 RepID=UPI00036E4B74
Uncharacterized protein {ECO:0000313|EMBL:KKT29340.1}; TaxID=1618912 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC1_44_10.;"
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_2829_22

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comp(15720..16025)
DNA (306bp) protein (102aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT57330.1}; TaxID=1618652 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWB1_44_23.;"
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_2829_23

Not on your lists

comp(16194..16622)
DNA (429bp) protein (143aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT57331.1}; TaxID=1618652 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWB1_44_23.;"
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_2829_24

Not on your lists

comp(16757..17719)
DNA (963bp) protein (321aa)
hypothetical protein n=1 Tax=Streptomyces sp. Wigar10 RepID=UPI0003719828
Nitrate/sulfonate/bicarbonate ABC transporter periplasmic ligand-binding protein, nonfunctional {ECO:0000313|EMBL:KKT57332.1}; TaxID=1618652 species="Bacteria; Parcubacteria.;" source="Parcubacteria (
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_2829_25
GWC2_OD1_45_7_partial, Azambacteria, Parcubacteria, Bacteria

Not on your lists

17783..18982
DNA (1200bp) protein (400aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA010-E09 RepID=UPI00037B17FF
Threonine-tRNA ligase {ECO:0000313|EMBL:KKU12993.1}; TaxID=1618621 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Azambacteria) bacterium GW2011_GWC2_45_7b.;"
Threonine-tRNA ligase
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_2829_26
R_OD1_Giovannonibacteria_45_140, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

19003..19533
DNA (531bp) protein (177aa)
Tax=RIFCSPLOWO2_01_FULL_OD1_Giovannonibacteria_45_140_curated
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_2829_27
R_OD1_Giovannonibacteria_45_140, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(19557..19988)
DNA (432bp) protein (144aa)
Tax=RIFCSPLOWO2_01_FULL_OD1_Giovannonibacteria_45_140_curated
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_2829_28
R_OD1_Giovannonibacteria_45_140, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

20029..21096
DNA (1068bp) protein (356aa)
tRNA delta(2)-isopentenylpyrophosphate transferase; K00791 tRNA dimethylallyltransferase [EC:2.5.1.75] Tax=RIFCSPLOWO2_01_FULL_OD1_Giovannonibacteria_45_140_curated
miaA; tRNA delta(2)-isopentenylpyrophosphate transferase; K00791 tRNA dimethylallyltransferase [EC:2.5.1.75] id=5803396 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
tRNA delta(2)-isopentenylpyrophosphate transferase
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_2829_29
R_OD1_Giovannonibacteria_45_140, Giovannonibacteria, Parcubacteria, Bacteria

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comp(21114..22718)
DNA (1605bp) protein (535aa)
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (EC:6.3.5.-); K02434 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] Tax=RIFCSPLOWO2_01_FULL_OD1_Giova
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (EC:6.3.5.-)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA010-E09 RepID=UPI00036DDDF2
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_2829_30
R_OD1_Giovannonibacteria_45_140, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

22745..23356
DNA (612bp) protein (204aa)
translation elongation factor P; K02356 elongation factor P Tax=RIFCSPLOWO2_01_FULL_OD1_Giovannonibacteria_45_140_curated
Elongation factor P id=4242105 bin=GWC2_OD1_43_27 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
translation elongation factor P
Displaying items 1-30 of 40 in total

View Taxonomy