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RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_3318

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_3318_1
R_OD1_Giovannonibacteria_45_140, Giovannonibacteria, Parcubacteria, Bacteria

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comp(2..970)
DNA (969bp) protein (323aa)
hypothetical protein n=1 Tax=Streptomyces sp. Wigar10 RepID=UPI0003719828
ssuA; sulfonate ABC transporter substrate-binding protein; K02051 NitT/TauT family transport system substrate-binding protein Tax=RIFCSPLOWO2_01_FULL_OD1_Giovannonibacteria_45_140_curated
ABC transporter, substrate-binding protein, aliphatic sulfonates family
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_3318_2

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comp(989..1948)
DNA (960bp) protein (320aa)
Immunogenic protein {ECO:0000313|EMBL:KKT29705.1}; TaxID=1618912 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC1_44_10.;"
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_3318_3
GWC2_OD1_45_7_partial, Azambacteria, Parcubacteria, Bacteria

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comp(1957..2802)
DNA (846bp) protein (282aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA036-E14 RepID=UPI000375F4C7
Response regulator receiver domain protein (CheY-like) {ECO:0000313|EMBL:KKU12038.1}; TaxID=1618621 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Azambacteria) bacterium GW2011_GWC2_45_7b
two component system response regulator, modulated diguanylate cyclase
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_3318_4

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comp(2822..4912)
DNA (2091bp) protein (697aa)
PAS/PAC sensor signal transduction histidine kinase (EC:2.7.13.3)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA036-E14 RepID=UPI0003751E19
Uncharacterized protein {ECO:0000313|EMBL:KKT56868.1}; TaxID=1618652 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWB1_44_23.;"
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_3318_5
R_OD1_Giovannonibacteria_45_140, Giovannonibacteria, Parcubacteria, Bacteria

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comp(4918..5925)
DNA (1008bp) protein (336aa)
hypothetical protein; K01989 putative ABC transport system substrate-binding protein Tax=RIFCSPLOWO2_01_FULL_OD1_Giovannonibacteria_45_140_curated
Putative uncharacterized protein id=1956523 bin=GWD2_Deltaproteobacteria_55_8 species=Bradyrhizobium sp. CCGE-LA001 genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_3318_6

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comp(5940..6836)
DNA (897bp) protein (299aa)
polA; DNA polymerase I (EC:2.7.7.7); K02335 DNA polymerase I [EC:2.7.7.7] id=5803218 bin=OD1_GWC2_34_28 species=uncultured bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
DNA polymerase I (EC:2.7.7.7)
Polymerase protein {ECO:0000313|EMBL:KKT56870.1}; TaxID=1618652 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWB1_44_23.;"
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_3318_7

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comp(6833..7297)
DNA (465bp) protein (155aa)
ATPase YjeE, predicted to have essential role in cell wall biosynthesis {ECO:0000313|EMBL:KKT56871.1}; TaxID=1618652 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bact
Putative uncharacterized protein id=4731870 bin=GWC2_OD1_43_27 species=ACD63 genus=ACD63 taxon_order=ACD63 taxon_class=ACD63 phylum=OD1 tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_3318_8

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comp(7510..7986)
DNA (477bp) protein (159aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT56872.1}; TaxID=1618652 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWB1_44_23.;"
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_3318_9

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8111..9163
DNA (1053bp) protein (351aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT56873.1}; TaxID=1618652 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWB1_44_23.;"
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_3318_10
R_OD1_Giovannonibacteria_45_140, Giovannonibacteria, Parcubacteria, Bacteria

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9182..10831
DNA (1650bp) protein (550aa)
PulE; type II secretory pathway, ATPase PulE/tfp pilus assembly pathway, ATPase PilB; K02652 type IV pilus assembly protein PilB Tax=RIFCSPLOWO2_01_FULL_OD1_Giovannonibacteria_45_140_curated
pilB1; type IV-A pilus assembly ATPase PilB; K02652 type IV pilus assembly protein PilB id=5803215 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
PulE; type II secretory pathway, ATPase PulE/tfp pilus assembly pathway, ATPase PilB
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_3318_11
R_OD1_Giovannonibacteria_45_140, Giovannonibacteria, Parcubacteria, Bacteria

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11042..12073
DNA (1032bp) protein (344aa)
Holliday junction DNA helicase RuvB; K03551 holliday junction DNA helicase RuvB [EC:3.6.4.12] Tax=RIFCSPLOWO2_01_FULL_OD1_Giovannonibacteria_45_140_curated
id=5227412 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
Holliday junction DNA helicase RuvB
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_3318_12

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12114..12386
DNA (273bp) protein (91aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT56876.1}; TaxID=1618652 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWB1_44_23.;"
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_3318_13
R_OD1_Giovannonibacteria_45_140, Giovannonibacteria, Parcubacteria, Bacteria

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comp(12461..12742)
DNA (282bp) protein (94aa)
Putative uncharacterized protein n=1 Tax=Flavobacterium phage 11b RepID=Q5ZGF1_9CAUD
Putative uncharacterized protein Tax=RIFCSPLOWO2_01_FULL_OD1_Giovannonibacteria_45_140_curated
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_3318_14
R_OD1_Giovannonibacteria_45_140, Giovannonibacteria, Parcubacteria, Bacteria

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12841..13041
DNA (201bp) protein (67aa)
Tax=RIFCSPLOWO2_01_FULL_OD1_Giovannonibacteria_45_140_curated
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_3318_15
R_OD1_Giovannonibacteria_45_140, Giovannonibacteria, Parcubacteria, Bacteria

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13071..13541
DNA (471bp) protein (157aa)
hypothetical protein Tax=RIFCSPLOWO2_01_FULL_OD1_Giovannonibacteria_45_140_curated
transmembrane_regions 32..54 id=8495 bin=ACD15 species=ACD15 genus=ACD15 taxon_order=ACD15 taxon_class=ACD15 phylum=OD1-i tax=ACD15 organism_group=OD1-i organism_desc=OD1-i
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_3318_16
GWA1_OD1_44_25, Giovannonibacteria, Parcubacteria, Bacteria

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13528..14067
DNA (540bp) protein (180aa)
Transcriptional regulator {ECO:0000313|EMBL:KKT59447.1}; TaxID=1618645 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA1_44_25.;"
Probable transcriptional regulatory protein Despr_0673 id=3336322 bin=GWA2_OP3_53_43 species=Desulfobulbus propionicus genus=Desulfobulbus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_OP3_53_43 organism_group=OP3 (Omnitrophica) organism_desc=Was designated as curated version. Not curated. rp block places as OP3
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_3318_17

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14064..14540
DNA (477bp) protein (159aa)
RuvC {ECO:0000313|EMBL:KKT29718.1}; TaxID=1618912 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC1_44_10.;"
Crossover junction endodeoxyribonuclease RuvC id=2563244 bin=GWF1_Spirochaetes_51_8 species=unknown genus=Thermoanaerobacterium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWF1_Spirochaetes_51_8 organism_group=Spirochaetes organism_desc=Novel clade
Holliday junction resolvase
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_3318_18

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14596..14751
DNA (156bp) protein (52aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT56880.1}; TaxID=1618652 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWB1_44_23.;"
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_3318_19

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comp(14740..15918)
DNA (1179bp) protein (393aa)
hypothetical protein n=1 Tax=Nitrospina sp. AB-629-B06 RepID=UPI000360969B
Tyrosyl-tRNA synthetase {ECO:0000313|EMBL:KKT56881.1}; TaxID=1618652 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWB1_44_23.;"
tyrosyl-tRNA synthetase
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_3318_20
R_OD1_Giovannonibacteria_45_140, Giovannonibacteria, Parcubacteria, Bacteria

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15965..18433
DNA (2469bp) protein (823aa)
1A family penicillin-binding protein Tax=RIFCSPLOWO2_01_FULL_OD1_Giovannonibacteria_45_140_curated
putative penicillin-binding protein id=5803206 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
1A family penicillin-binding protein
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_3318_21

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comp(18403..19506)
DNA (1104bp) protein (368aa)
dnaN; DNA polymerase III subunit beta (EC:2.7.7.7)
Polymerase III subunit beta protein {ECO:0000313|EMBL:KKT56883.1}; TaxID=1618652 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWB1_44_23.;"
DNA polymerase III subunit beta id=2934338 bin=GWC1_OD1_38_17 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_3318_22

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comp(19607..20992)
DNA (1386bp) protein (462aa)
Chromosomal replication initiator protein DnaA {ECO:0000313|EMBL:KKT29723.1}; TaxID=1618912 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC1_44_10.;"
Chromosomal replication initiator protein DnaA id=4731911 bin=GWC2_OD1_43_27 species=ACD15 genus=ACD15 taxon_order=ACD15 taxon_class=ACD15 phylum=OD1-i tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
dnaA; chromosomal replication initiation protein
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_3318_23

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21243..21584
DNA (342bp) protein (114aa)
Ribonuclease P protein component n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=RNPA_ROSCS
Ribonuclease P protein component {ECO:0000313|EMBL:KKT56885.1}; TaxID=1618652 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWB1_44_23.;"
ribonuclease P protein component
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_3318_24

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21559..22281
DNA (723bp) protein (241aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00036FDF62
Preprotein translocase subunit YidC {ECO:0000313|EMBL:KKT56886.1}; TaxID=1618652 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWB1_44_23.;"
60 kDa inner membrane insertion protein
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_3318_25
R_OD1_Giovannonibacteria_45_140, Giovannonibacteria, Parcubacteria, Bacteria

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22226..22753
DNA (528bp) protein (176aa)
R3H protein n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7Q0X6_9BACT
single-stranded nucleic acid binding R3H domain-containing protein; K06346 spoIIIJ-associated protein Tax=RIFCSPLOWO2_01_FULL_OD1_Giovannonibacteria_45_140_curated
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_3318_26

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comp(22769..24517)
DNA (1749bp) protein (583aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2FGV3_9BACT
ABC-type multidrug transport system, ATPase and permease component {ECO:0000313|EMBL:KKT56888.1}; TaxID=1618652 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium
multidrug ABC transporter ATPase/permease
Displaying 26 items

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