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RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_3304

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_3304_1
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(3..401)
DNA (399bp) protein (133aa)
magnesium and cobalt transport protein CorA; K03284 magnesium transporter Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
Mg2 transporter protein CorA family protein; K03284 magnesium transporter id=5803505 bin=OD1_GWC2_34_28 species=ACD1 genus=ACD1 taxon_order=ACD1 taxon_class=ACD1 phylum=OD1-i tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_3304_2
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

459..1244
DNA (786bp) protein (262aa)
cytochrome c biogenesis protein, transmembrane region Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
hypothetical protein id=5801798 bin=GWE2_OD1_42_8 species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=GWE2_OD1_42_8 organism_group=OD1 (Parcubacteria) organism_desc=GW2011_OD1_1 GW2011_A
cytochrome c biogenesis transmembrane protein
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_3304_3
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

1248..1769
DNA (522bp) protein (174aa)
hypothetical protein
Putative uncharacterized protein Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
Putative uncharacterized protein id=4242295 bin=GWC2_OD1_43_27 species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_3304_4
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

1771..2148
DNA (378bp) protein (126aa)
VKORC1/thioredoxin domain-containing protein Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
VKORC1/thioredoxin domain protein id=2192964 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_3304_5
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

2208..2969
DNA (762bp) protein (254aa)
short-chain dehydrogenase/reductase SDR Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
Short-chain dehydrogenase/reductase SDR id=2669948 bin=GWA1_ZB2_49_26 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
short-chain dehydrogenase/reductase SDR
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_3304_6
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

2972..4111
DNA (1140bp) protein (380aa)
cation transport ATPase; K01533 Cu2+-exporting ATPase [EC:3.6.3.4] Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
det:DET0953 copper-translocating P-type ATPase (EC:3.6.3.4); K01533 Cu2+-exporting ATPase [EC:3.6.3.4] id=1241732 bin=RBG2 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
cation transport ATPase
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_3304_7
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

4146..4355
DNA (210bp) protein (70aa)
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_3304_8
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

4438..5037
DNA (600bp) protein (200aa)
nuclease (EC:3.1.31.1); K01174 micrococcal nuclease [EC:3.1.31.1] Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
nuclease (EC:3.1.31.1)
Micrococcal nuclease-like protein id=5024929 bin=GWA2_CPR4_42_17 species=ACD22 genus=ACD22 taxon_order=ACD22 taxon_class=ACD22 phylum=WWE3 tax=GWA2_CPR4_42_17 organism_group=CPR4 organism_desc=from megabin
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_3304_9
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

5184..5456
DNA (273bp) protein (91aa)
Transcriptional regulator, ArsR family Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
Transcriptional regulator, ArsR family id=4649096 bin=GWA2_OP3_52_12 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=ACD58 tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_3304_10
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

5484..6296
DNA (813bp) protein (271aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI000362D291
GTP-binding protein YchF; K06942 Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
GTP-binding protein
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_3304_11
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

6299..7228
DNA (930bp) protein (310aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1Y7N2_9BACT
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_3304_12
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

7290..8216
DNA (927bp) protein (309aa)
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_3304_13
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists


8310..10544
DNA (2235bp) protein (745aa)
leuS; leucyl-tRNA synthetase; K01869 leucyl-tRNA synthetase [EC:6.1.1.4] Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
Leucine--tRNA ligase n=1 Tax=Anaerococcus lactolyticus ATCC 51172 RepID=C2BID4_9FIRM
leucyl-tRNA synthetase
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_3304_14
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

10603..11730
DNA (1128bp) protein (376aa)
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-UDP N-acetylglucosamine transferase (EC:2.4.1.227); K02563 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] id=5803519 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
UDP-N-acetylglucosamine-N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; K02563 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undeca
UDP-N-acetylglucosamine-N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_3304_15
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

11720..12622
DNA (903bp) protein (301aa)
glutamyl-tRNA synthetase; K09698 nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24] Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
glutamyl-tRNA synthetase; K01885 glutamyl-tRNA synthetase [EC:6.1.1.17] id=5803517 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
glutamyl-tRNA synthetase
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_3304_16
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

12619..13875
DNA (1257bp) protein (419aa)
spoIIQ; cell wall-binding protein Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
peptidase M23b id=5803516 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
spoIIQ; cell wall-binding protein
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_3304_17
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

13935..14582
DNA (648bp) protein (216aa)
transcriptional repressor, LexA family; K01356 repressor LexA [EC:3.4.21.88] id=3822 bin=ACD12 species=ACD12 genus=ACD12 taxon_order=ACD12 taxon_class=ACD12 phylum=OP11 tax=ACD12 organism_group=OP11 (Microgenomates) organism_desc= OP11
SOS-response transcriptional repressor, LexA Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
SOS-response transcriptional repressor, LexA
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_3304_18
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

14584..16539
DNA (1956bp) protein (652aa)
N-6 DNA methylase Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
Type I Restriction Enzyme id=4838844 bin=GWC2_OD1_43_27 species=ACD40 genus=ACD40 taxon_order=ACD40 taxon_class=ACD40 phylum=OP11 tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
N-6 DNA Methylase family protein
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_3304_19
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

16544..17350
DNA (807bp) protein (269aa)
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
hypothetical protein id=6053 bin=ACD13 species=ACD13 genus=ACD13 taxon_order=ACD13 taxon_class=ACD13 phylum=OP11 tax=ACD13 organism_group=OP11 (Microgenomates) organism_desc=OP11
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_3304_20
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

17458..18795
DNA (1338bp) protein (446aa)
DNA methylase-type I restriction-modification system Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
DNA METHYLASE-TYPE I RESTRICTION-MODIFICATION SYSTEM id=4838847 bin=GWC2_OD1_43_27 species=Mannheimia haemolytica genus=Mannheimia taxon_order=Pasteurellales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_3304_21
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

18826..19023
DNA (198bp) protein (66aa)
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_3304_22
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

19115..20068
DNA (954bp) protein (318aa)
integrase family protein Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
Tyrosine recombinase XerC id=3544177 bin=GWA1_ZB2_49_26 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
Tyrosine recombinase XerD
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_3304_23
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(20117..20560)
DNA (444bp) protein (148aa)
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_3304_24
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(20664..21353)
DNA (690bp) protein (230aa)
putative ribonuclease III (EC:3.1.26.3) Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
ribonuclease III (EC:3.1.26.3); K03685 ribonuclease III [EC:3.1.26.3] id=5803446 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_3304_25
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(21350..22264)
DNA (915bp) protein (305aa)
putative transcription termination factor Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
NusB antitermination factor; K03625 N utilization substance protein B id=5226910 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
putative transcription termination factor
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_3304_26
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists


comp(22280..22480)
DNA (201bp) protein (67aa)
50S ribosomal protein L32 n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PVL6_9BACT
rpmF; 50S ribosomal protein L32; K02911 large subunit ribosomal protein L32 Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
rpmF; 50S ribosomal protein L32
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_3304_27
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(22567..23172)
DNA (606bp) protein (202aa)
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_3304_28
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(23451..25205)
DNA (1755bp) protein (585aa)
TldD/PmbA family protein Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
TldD/PmbA family protein id=3617555 bin=GWA1_Treponema_62_8 species=Treponema denticola genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWA1_Treponema_62_8 organism_group=Spirochaetes
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_3304_29
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(25575..25985)
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1Z1R1_9BACT
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_3304_30
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(26241..26978)
DNA (738bp) protein (246aa)
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
Displaying items 1-30 of 41 in total

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