ggKbase home page

RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_13122

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_13122_1
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

53..322
DNA (270bp) protein (90aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI0003622305
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_13122_2
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

400..1416
DNA (1017bp) protein (339aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2E946_9BACT
heavy metal-binding domain-containing protein Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_13122_3
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

1424..1822
DNA (399bp) protein (133aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2DK25_9BACT
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_13122_4
GWA2_OD1_47_12, Parcubacteria, Bacteria

Not on your lists

1995..2249
DNA (255bp) protein (85aa)
Putative uncharacterized protein Tax=GWA2_OD1_47_12
Putative uncharacterized protein id=3285206 bin=GWA2_Elusimicrobia_66_18 species=Bdellovibrio bacteriovorus genus=Bdellovibrio taxon_order=Bdellovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Elusimicrobia_66_18 organism_group=Elusimicrobia organism_desc=Part of new group in this phylum
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_13122_5
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

2318..2782
DNA (465bp) protein (155aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2B8P8_9BACT
yqjF; membrane-associated protein YqjF; K15977 putative oxidoreductase Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
yqjF; membrane-associated protein YqjF
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_13122_6
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

2779..3363
DNA (585bp) protein (195aa)
thiamine-triphosphatase-like Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
Uncharacterized protein id=3239451 bin=GWB1_KAZAN_52_7 species=GWC1_KAZAN_52_13 genus=GWC1_KAZAN_52_13 taxon_order=GWC1_KAZAN_52_13 taxon_class=GWC1_KAZAN_52_13 phylum=KAZAN tax=GWB1_KAZAN_52_7 organism_group=Kazan
thiamine-triphosphatase-like
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_13122_7
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(3682..4047)
DNA (366bp) protein (122aa)
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_13122_8
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

4279..5547
DNA (1269bp) protein (423aa)
hypothetical protein n=1 Tax=Brachyspira innocens RepID=UPI00036C19DB
DNA methylase N-4/N-6 domain-containing protein Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
DNA methylase N-4/N-6 domain-containing protein
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_13122_9
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

5552..6220
DNA (669bp) protein (223aa)
type II restriction enzyme MjaVIP (EC:3.1.21.4) Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
type II restriction enzyme MjaVIP (EC:3.1.21.4)
Putative type II restriction enzyme MjaVIP n=1 Tax=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) RepID=B5YK13_THEYD
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_13122_10
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

6233..6466
DNA (234bp) protein (78aa)
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_13122_11
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

6459..7133
DNA (675bp) protein (225aa)
DNA methylase domain protein n=1 Tax=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) RepID=B5YK12_THEYD
DNA methylase domain protein Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
DNA methylase/Development and cell death domain
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_13122_12
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(7271..8524)
DNA (1254bp) protein (418aa)
protease Do; K01362 [EC:3.4.21.-] Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
Protease Do id=2823838 bin=GWC1_OD1_38_17 species=ACD43 genus=ACD43 taxon_order=ACD43 taxon_class=ACD43 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
Trypsin
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_13122_13
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

8725..9162
DNA (438bp) protein (146aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI000369390A
hypothetical protein; K09005 hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_13122_14
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

9297..11609
DNA (2313bp) protein (771aa)
ribonucleoside-triphosphate reductase; K00525 ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
Ribonucleoside-triphosphate reductase id=4968545 bin=GWA2_CPR4_42_17 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=GWA2_CPR4_42_17 organism_group=CPR4 organism_desc=from megabin
Ribonucleoside-triphosphate reductase
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_13122_15
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

12059..14524
DNA (2466bp) protein (822aa)
similar to AF268097.1 TPR-containing protein Mql1 Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
Putative uncharacterized protein id=4968544 bin=GWA2_CPR4_42_17 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=GWA2_CPR4_42_17 organism_group=CPR4 organism_desc=from megabin
Tetratricopeptide TPR_2
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_13122_16
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

14524..16215
DNA (1692bp) protein (564aa)
integral membrane protein MviN; K03980 virulence factor Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
hypothetical protein; K03980 virulence factor id=5803542 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
integral membrane protein MviN
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_13122_17
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(16216..17034)
DNA (819bp) protein (273aa)
methionyl-tRNA formyltransferase; K00604 methionyl-tRNA formyltransferase [EC:2.1.2.9] Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
methionyl-tRNA formyltransferase (EC:2.1.2.9); K00604 methionyl-tRNA formyltransferase [EC:2.1.2.9] id=5803612 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
methionyl-tRNA formyltransferase
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_13122_18
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(17031..17576)
DNA (546bp) protein (182aa)
def; peptide deformylase (EC:3.5.1.88); K01462 peptide deformylase [EC:3.5.1.88] Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
Uncharacterized protein n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7Q076_9BACT
peptide deformylase
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_13122_19
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(17589..17855)
DNA (267bp) protein (89aa)
Marine sediment metagenome DNA, contig: S01H4_S18847 Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_13122_20
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(17974..18366)
DNA (393bp) protein (131aa)
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase id=2692328 bin=GWF2_OP9_related_35_9 species=RAAC1_SR1 genus=RAAC1_SR1 taxon_order=RAAC1_SR1 taxon_class=RAAC1_SR1 phylum=SR1 tax=GWF2_OP9_related_35_9 organism_group=OP9 (Atribacteria)
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_13122_21
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(18445..18825)
DNA (381bp) protein (127aa)
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_13122_22
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

18950..20269
DNA (1320bp) protein (440aa)
murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC:2.5.1.7); K00790 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; K00790 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] id=5803603 bin=OD1_GWC2_34_28 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC:2.5.1.7)
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_13122_23
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

20270..21289
DNA (1020bp) protein (340aa)
MreB/Mrl family cell shape determining protein; K03569 rod shape-determining protein MreB and related proteins Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
MreB/Mrl family cell shape determining protein; K03569 rod shape-determining protein MreB and related proteins id=5803602 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
MreB/Mrl family cell shape determining protein
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_13122_24
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

21296..21613
DNA (318bp) protein (106aa)
DNA polymerase III subunit delta'; K02341 DNA polymerase III subunit delta' [EC:2.7.7.7] id=5803600 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
DNA polymerase III Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
Displaying 24 items

View Taxonomy