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RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_4395

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_4395_1
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

3..350
DNA (348bp) protein (116aa)
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_4395_2
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(330..1874)
DNA (1545bp) protein (515aa)
PAS/PAC sensor signal transduction histidine kinase (EC:2.7.3.-); K00936 [EC:2.7.3.-] id=5803553 bin=OD1_GWC2_34_28 species=ACD18 genus=ACD18 taxon_order=ACD18 taxon_class=ACD18 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
response regulator receiver sensor signal transduction histidine kinase Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
response regulator receiver sensor signal transduction histidine kinase
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_4395_3
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(1871..2539)
DNA (669bp) protein (223aa)
Inhibition of morphological differentiation protein Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
HAD-superfamily hydrolase id=5803552 bin=OD1_GWC2_34_28 species=Clostridium pasteurianum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
Inhibition of morphological differentiation protein
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_4395_4
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(2549..3253)
DNA (705bp) protein (235aa)
phospholipid/glycerol acyltransferase; K00655 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
1-acyl-sn-glycerol-3-phosphate acyltransferase; K00655 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] id=5803551 bin=OD1_GWC2_34_28 species=Arthrobacter phenanthrenivorans genus=Arthrobacter taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
phospholipid/glycerol acyltransferase
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_4395_5
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

3354..3773
DNA (420bp) protein (140aa)
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_4395_6
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

3911..4132
DNA (222bp) protein (74aa)
hypothetical protein, partial n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI000368F804
hypothetical protein; K09131 hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_4395_7
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

4129..5172
DNA (1044bp) protein (348aa)
tRNA-specific 2-thiouridylase mnmA; K00566 tRNA-specific 2-thiouridylase [EC:2.8.1.-] Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC:2.1.1.61); K00566 tRNA-specific 2-thiouridylase [EC:2.8.1.-] id=5803372 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_4395_8
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

5172..5855
DNA (684bp) protein (228aa)
ATP-cone domain-containing protein Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
ATP-cone domain-containing protein id=5803374 bin=OD1_GWC2_34_28 species=Marivirga tractuosa genus=Marivirga taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
ATP-cone domain-containing protein
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_4395_9
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

5848..6684
DNA (837bp) protein (279aa)
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
Putative uncharacterized protein id=4242116 bin=GWC2_OD1_43_27 species=uncultured marine bacterium 580 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_4395_10
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

6762..7031
DNA (270bp) protein (90aa)
Transcriptional regulator, ArsR family Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
Transcriptional regulator, ArsR family id=4649096 bin=GWA2_OP3_52_12 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=ACD58 tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_4395_11
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

7210..7440
DNA (231bp) protein (77aa)
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_4395_12
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists


7698..9314
DNA (1617bp) protein (539aa)
alaS; alanine--tRNA ligase (EC:6.1.1.7); K01872 alanyl-tRNA synthetase [EC:6.1.1.7] Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA010-E09 RepID=UPI0003805103
Alanine-tRNA ligase
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_4395_13
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

9361..10335
DNA (975bp) protein (325aa)
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_4395_14
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

10387..11550
DNA (1164bp) protein (388aa)
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_4395_15
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

11605..12951
DNA (1347bp) protein (449aa)
seg Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
seg id=5803403 bin=OD1_GWC2_34_28 species=candidate division TM7 genomosp. GTL1 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Candidatus Saccharibacteria tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_4395_16
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

12956..15274
DNA (2319bp) protein (773aa)
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_4395_17
GWA2_OD1_47_12, Parcubacteria, Bacteria

Not on your lists

15332..15547
DNA (216bp) protein (72aa)
Translation initiation factor IF-1 Tax=GWA2_OD1_47_12
Translation initiation factor IF-1 id=5227103 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
infA; translation initiation factor IF-1
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_4395_18
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists


15665..16045
DNA (381bp) protein (127aa)
rpsM; 30S ribosomal protein S13; K02952 small subunit ribosomal protein S13 Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
30S ribosomal protein S13; K02952 small subunit ribosomal protein S13 id=5803405 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
30S ribosomal protein S13
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_4395_19
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists


16050..16481
DNA (432bp) protein (144aa)
30S ribosomal protein S11; K02948 small subunit ribosomal protein S11 Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
30S ribosomal protein S11; K02948 small subunit ribosomal protein S11 id=5803406 bin=OD1_GWC2_34_28 species=sediment metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
30S ribosomal protein S11
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_4395_20
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists


16501..17097
DNA (597bp) protein (199aa)
30S ribosomal protein S4; K02986 small subunit ribosomal protein S4 Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
rpsD; 30S ribosomal protein S4; K02986 small subunit ribosomal protein S4 id=5803407 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
30S ribosomal protein S4P
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_4395_21
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

17211..18161
DNA (951bp) protein (317aa)
DNA-directed RNA polymerase subunit alpha; K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] id=5803408 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
DNA-directed RNA polymerase subunit alpha Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
DNA-directed RNA polymerase subunit alpha
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_4395_22
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists


18167..18517
DNA (351bp) protein (117aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA040-L21 RepID=UPI0003683143
rplQ; 50S ribosomal protein L17; K02879 large subunit ribosomal protein L17 Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
rplQ; 50S ribosomal protein L17
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_4395_23
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists


18514..18858
DNA (345bp) protein (115aa)
50S ribosomal protein L13p; K02871 large subunit ribosomal protein L13 Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
50S ribosomal protein L13; K02871 large subunit ribosomal protein L13 id=5803410 bin=OD1_GWC2_34_28 species=sediment metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
50S ribosomal protein L13p
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_4395_24
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists


18928..19353
DNA (426bp) protein (142aa)
30S ribosomal protein S9 n=1 Tax=Parcubacteria bacterium SCGC AAA010-E09 RepID=UPI00035CD22E
30S ribosomal protein S9; K02996 small subunit ribosomal protein S9 Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
30S ribosomal protein S9
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_4395_25
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

19356..19955
DNA (600bp) protein (200aa)
molecular chaperone GrpE (heat shock protein) Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
GrpE protein; K03687 molecular chaperone GrpE id=5803413 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
molecular chaperone GrpE (heat shock protein)
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_4395_26
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

19952..20359
DNA (408bp) protein (136aa)
hypothetical protein n=1 Tax=Bacillus acidiproducens RepID=UPI000381AE16
nucleotidyltransferase substrate binding protein, HI0074 family Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
nucleotidyltransferase substrate binding protein, HI0074 family
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_4395_27
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

20356..20676
DNA (321bp) protein (107aa)
DNA polymerase beta domain-containing protein region Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
Nucleotidyltransferase id=4526014 bin=GWC2_Pelobacter_58_13 species=Clostridium ultunense genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
DNA polymerase beta domain-containing protein region
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_4395_28
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

20673..21032
DNA (360bp) protein (120aa)
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_4395_29
GWA2_OD1_47_12, Parcubacteria, Bacteria

Not on your lists

21064..21528
DNA (465bp) protein (155aa)
chaperone protein DnaK (EC:1.3.1.74); K04043 molecular chaperone DnaK id=5803414 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
chaperone protein DnaK (EC:1.3.1.74)
Chaperone protein DnaK {ECO:0000313|EMBL:KKU60030.1}; TaxID=1618841 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_47_12.;"
Displaying 29 items

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