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RIFCSPLOWO2_01_FULL_OD1_50_130_rifcsplowo2_01_scaffold_13240

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_01_FULL_OD1_50_130_rifcsplowo2_01_scaffold_13240_1
R_RIF_OD1_11_50_13, RIF-OD1-11, Parcubacteria, Bacteria

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1112..1843
DNA (732bp) protein (244aa)
hypothetical protein
id=3486291 Tax=RIFCSPLOWO2_02_RIF_OD1_11_50_13_curated
id=3486291 bin=GWA1_ZB2_49_26 species=ACD38 genus=ACD38 taxon_order=ACD38 taxon_class=ACD38 phylum=OP11 tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
RIFCSPLOWO2_01_FULL_OD1_50_130_rifcsplowo2_01_scaffold_13240_2
R_RIF_OD1_11_50_13, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

1815..2357
DNA (543bp) protein (181aa)
Dihydrofolate reductase; K00287 dihydrofolate reductase [EC:1.5.1.3] Tax=RIFCSPLOWO2_02_RIF_OD1_11_50_13_curated
dihydrofolate reductase (EC:1.5.1.3)
Dihydrofolate reductase; K00287 dihydrofolate reductase [EC:1.5.1.3] id=5240875 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
RIFCSPLOWO2_01_FULL_OD1_50_130_rifcsplowo2_01_scaffold_13240_3
R_RIF_OD1_11_50_13, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

2354..3058
DNA (705bp) protein (235aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1ZGA7_9BACT
hypothetical protein Tax=RIFCSPLOWO2_02_RIF_OD1_11_50_13_curated
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_50_130_rifcsplowo2_01_scaffold_13240_4
R_RIF_OD1_11_50_13, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(3179..3628)
DNA (450bp) protein (150aa)
hypothetical protein
Predicted protein Tax=RIFCSPLOWO2_02_RIF_OD1_11_50_13_curated
Predicted protein id=1916096 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
RIFCSPLOWO2_01_FULL_OD1_50_130_rifcsplowo2_01_scaffold_13240_5
R_RIF_OD1_11_50_13, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(3684..4898)
DNA (1215bp) protein (405aa)
hypothetical protein; K02004 putative ABC transport system permease protein Tax=RIFCSPLOWO2_02_RIF_OD1_11_50_13_curated
ABC transporter, permease protein id=4731804 bin=GWC2_OD1_43_27 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
multidrug ABC transporter substrate-binding protein
RIFCSPLOWO2_01_FULL_OD1_50_130_rifcsplowo2_01_scaffold_13240_6
Parcubacteria bacterium GW2011_GWF2_50_9, Parcubacteria, Bacteria

Not on your lists

comp(4895..5650)
DNA (756bp) protein (252aa)
ABC-type transport system {ECO:0000313|EMBL:KKW21968.1}; TaxID=1618975 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWF2_50_9.;"
ABC-type transport system id=4731803 bin=GWC2_OD1_43_27 species=PER_GWF2_38_31 genus=PER_GWF2_38_31 taxon_order=PER_GWF2_38_31 taxon_class=PER_GWF2_38_31 phylum=PER tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
ABC transporter
RIFCSPLOWO2_01_FULL_OD1_50_130_rifcsplowo2_01_scaffold_13240_7
Parcubacteria bacterium GW2011_GWF2_50_9, Parcubacteria, Bacteria

Not on your lists

comp(5653..7473)
DNA (1821bp) protein (607aa)
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:KKW21969.1}; TaxID=1618975 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWF2_50_9.;"
RND family efflux transporter MFP subunit; K02005 HlyD family secretion protein id=133570 bin=ACD81 species=ACD81 genus=ACD81 taxon_order=ACD81 taxon_class=ACD81 phylum=OD1 tax=ACD81 organism_group=OD1 (Parcubacteria) organism_desc=OD1
Efflux transporter, RND family, MFP subunit
RIFCSPLOWO2_01_FULL_OD1_50_130_rifcsplowo2_01_scaffold_13240_8
R_RIF_OD1_11_50_13, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(7476..8027)
DNA (552bp) protein (184aa)
id=4731801 Tax=RIFCSPLOWO2_02_RIF_OD1_11_50_13_curated
id=4731801 bin=GWC2_OD1_43_27 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
RIFCSPLOWO2_01_FULL_OD1_50_130_rifcsplowo2_01_scaffold_13240_9
R_RIF_OD1_11_50_13, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(8032..8496)
DNA (465bp) protein (155aa)
id=4731800 Tax=RIFCSPLOWO2_02_RIF_OD1_11_50_13_curated
id=4731800 bin=GWC2_OD1_43_27 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
RIFCSPLOWO2_01_FULL_OD1_50_130_rifcsplowo2_01_scaffold_13240_10
R_RIF_OD1_11_50_13, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(8538..9104)
DNA (567bp) protein (189aa)
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFCSPLOWO2_02_RIF_OD1_11_50_13_curated
RNA polymerase, sigma-24 subunit, ECF subfamily id=4731799 bin=GWC2_OD1_43_27 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
ECF subfamily RNA polymerase sigma-24 factor
RIFCSPLOWO2_01_FULL_OD1_50_130_rifcsplowo2_01_scaffold_13240_11
Parcubacteria bacterium GW2011_GWF2_50_9, Parcubacteria, Bacteria

Not on your lists

comp(9379..10911)
DNA (1533bp) protein (511aa)
hypothetical protein cdiviTM7_02864 n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B2083 id=52931 bin=ACD41 species=candidate division TM7 single-cell isolate TM7c genus=unknown taxon_order=unknown taxon_class=unknown phylum=Candidatus Saccharibacteria tax=ACD41 organism_group=OD1 (Parcubacteria) organism_desc=OD1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KKW21973.1}; TaxID=1618975 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWF2_50_9.;"
RIFCSPLOWO2_01_FULL_OD1_50_130_rifcsplowo2_01_scaffold_13240_12
R_RIF_OD1_11_50_13, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(11122..11376)
DNA (255bp) protein (85aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI000365E383
SWIB/MDM2 domain-containing protein Tax=RIFCSPLOWO2_02_RIF_OD1_11_50_13_curated
SWIB/MDM2 domain-containing protein
RIFCSPLOWO2_01_FULL_OD1_50_130_rifcsplowo2_01_scaffold_13240_13
Parcubacteria bacterium GW2011_GWF2_50_9, Parcubacteria, Bacteria

Not on your lists

11445..11615
DNA (171bp) protein (57aa)
Uncharacterized protein {ECO:0000313|EMBL:KKW21975.1}; TaxID=1618975 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWF2_50_9.;"
RIFCSPLOWO2_01_FULL_OD1_50_130_rifcsplowo2_01_scaffold_13240_14
R_RIF_OD1_11_50_13, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(11612..12274)
DNA (663bp) protein (221aa)
Tax=RIFCSPLOWO2_02_RIF_OD1_11_50_13_curated
RIFCSPLOWO2_01_FULL_OD1_50_130_rifcsplowo2_01_scaffold_13240_15
R_RIF_OD1_11_50_13, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(12417..13235)
DNA (819bp) protein (273aa)
lytC3; N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28) Tax=RIFCSPLOWO2_02_RIF_OD1_11_50_13_curated
lytC_3; N-acetylmuramoyl-L-alanine amidase LytC precursor (EC:3.5.1.28)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2CXB4_9BACT
RIFCSPLOWO2_01_FULL_OD1_50_130_rifcsplowo2_01_scaffold_13240_16
R_RIF_OD1_11_50_13, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

13304..13600
DNA (297bp) protein (99aa)
Tax=RIFCSPLOWO2_02_RIF_OD1_11_50_13_curated
RIFCSPLOWO2_01_FULL_OD1_50_130_rifcsplowo2_01_scaffold_13240_17
R_RIF_OD1_11_50_13, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(13893..14990)
DNA (1098bp) protein (366aa)
dnaX; DNA polymerase III gamma and tau subunits (EC:2.7.7.7); K02343 DNA polymerase III subunit gamma/tau [EC:2.7.7.7] Tax=RIFCSPLOWO2_02_RIF_OD1_11_50_13_curated
DNA polymerase III subunits gamma and tau; K02343 DNA polymerase III subunit gamma/tau [EC:2.7.7.7] id=5803572 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
dnaX; DNA polymerase III gamma and tau subunits (EC:2.7.7.7)
RIFCSPLOWO2_01_FULL_OD1_50_130_rifcsplowo2_01_scaffold_13240_18
Parcubacteria bacterium GW2011_GWF2_50_9, Parcubacteria, Bacteria

Not on your lists

comp(15247..15498)
DNA (252bp) protein (84aa)
Uncharacterized protein {ECO:0000313|EMBL:KKW21980.1}; TaxID=1618975 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWF2_50_9.;"
RIFCSPLOWO2_01_FULL_OD1_50_130_rifcsplowo2_01_scaffold_13240_19
R_RIF_OD1_11_50_13, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(15702..16682)
DNA (981bp) protein (327aa)
dihydrouridine synthase dus Tax=RIFCSPLOWO2_02_RIF_OD1_11_50_13_curated
tRNA-dihydrouridine synthase id=4649175 bin=GWA2_OP3_52_12 species=ACD1 genus=ACD1 taxon_order=ACD1 taxon_class=ACD1 phylum=OD1-i tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
dihydrouridine synthase dus
RIFCSPLOWO2_01_FULL_OD1_50_130_rifcsplowo2_01_scaffold_13240_20
R_RIF_OD1_11_50_13, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

16798..17313
DNA (516bp) protein (172aa)
Tax=RIFCSPLOWO2_02_RIF_OD1_11_50_13_curated
Displaying 20 items

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