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RIFCSPLOWO2_01_FULL_OD1_50_130_rifcsplowo2_01_scaffold_29147

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_01_FULL_OD1_50_130_rifcsplowo2_01_scaffold_29147_1
R_RIF_OD1_11_50_13, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(176..436)
DNA (261bp) protein (87aa)
Tax=RIFCSPLOWO2_02_RIF_OD1_11_50_13_curated
RIFCSPLOWO2_01_FULL_OD1_50_130_rifcsplowo2_01_scaffold_29147_2
R_RIF_OD1_11_50_13, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(735..3221)
DNA (2487bp) protein (829aa)
ATPase AAA-2 domain-containing protein; K03696 ATP-dependent Clp protease ATP-binding subunit ClpC Tax=RIFCSPLOWO2_02_RIF_OD1_11_50_13_curated
clp protease ATP binding subunit id=1263222 bin=GWE1_ACD58_39_12 species=ACD58_39_12 genus=ACD58_39_12 taxon_order=ACD58_39_12 taxon_class=ACD58_39_12 phylum=ACD58 tax=GWE1_ACD58_39_12 organism_group=ACD58 (Berkelbacteria) organism_desc=Replace with complete genome
ATPase AAA-2 domain-containing protein
RIFCSPLOWO2_01_FULL_OD1_50_130_rifcsplowo2_01_scaffold_29147_3
R_RIF_OD1_11_50_13, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(3266..3655)
DNA (390bp) protein (130aa)
Tax=RIFCSPLOWO2_02_RIF_OD1_11_50_13_curated
RIFCSPLOWO2_01_FULL_OD1_50_130_rifcsplowo2_01_scaffold_29147_4
R_RIF_OD1_11_50_13, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(3820..4626)
DNA (807bp) protein (269aa)
hypothetical protein Tax=RIFCSPLOWO2_02_RIF_OD1_11_50_13_curated
hypothetical protein id=4968550 bin=GWA2_CPR4_42_17 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=GWA2_CPR4_42_17 organism_group=CPR4 organism_desc=from megabin
RIFCSPLOWO2_01_FULL_OD1_50_130_rifcsplowo2_01_scaffold_29147_5
R_RIF_OD1_11_50_13, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(4827..6098)
DNA (1272bp) protein (424aa)
seryl-tRNA synthetase (EC:6.1.1.11); K01875 seryl-tRNA synthetase [EC:6.1.1.11] Tax=RIFCSPLOWO2_02_RIF_OD1_11_50_13_curated
seryl-tRNA synthetase (EC:6.1.1.11)
Serine--tRNA ligase id=4968554 bin=GWA2_CPR4_42_17 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=GWA2_CPR4_42_17 organism_group=CPR4 organism_desc=from megabin
RIFCSPLOWO2_01_FULL_OD1_50_130_rifcsplowo2_01_scaffold_29147_6
R_RIF_OD1_11_50_13, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

6551..7441
DNA (891bp) protein (297aa)
DNA protecting protein DprA; K04096 DNA processing protein Tax=RIFCSPLOWO2_02_RIF_OD1_11_50_13_curated
DNA protecting protein DprA id=4968556 bin=GWA2_CPR4_42_17 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=GWA2_CPR4_42_17 organism_group=CPR4 organism_desc=from megabin
DNA protecting protein DprA
RIFCSPLOWO2_01_FULL_OD1_50_130_rifcsplowo2_01_scaffold_29147_7
R_RIF_OD1_11_50_13, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

7935..10178
DNA (2244bp) protein (748aa)
DNA topoisomerase I (EC:5.99.1.2); K03168 DNA topoisomerase I [EC:5.99.1.2] Tax=RIFCSPLOWO2_02_RIF_OD1_11_50_13_curated
DNA topoisomerase I (EC:5.99.1.2); K03168 DNA topoisomerase I [EC:5.99.1.2] id=5803426 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
DNA topoisomerase I (EC:5.99.1.2)
RIFCSPLOWO2_01_FULL_OD1_50_130_rifcsplowo2_01_scaffold_29147_8
R_RIF_OD1_11_50_13, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

10220..11743
DNA (1524bp) protein (508aa)
RelA/SpoT family (p)ppGpp synthetase Tax=RIFCSPLOWO2_02_RIF_OD1_11_50_13_curated
(P)ppGpp synthetase id=4649181 bin=GWA2_OP3_52_12 species=uncultured bacterium CSLC2 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
RelA/SpoT family (p)ppGpp synthetase
RIFCSPLOWO2_01_FULL_OD1_50_130_rifcsplowo2_01_scaffold_29147_9
R_RIF_OD1_11_50_13, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(11927..12940)
DNA (1014bp) protein (338aa)
parB; chromosome partitioning protein ParB; K03497 chromosome partitioning protein, ParB family Tax=RIFCSPLOWO2_02_RIF_OD1_11_50_13_curated
id=5227213 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
parB; chromosome partitioning protein ParB
RIFCSPLOWO2_01_FULL_OD1_50_130_rifcsplowo2_01_scaffold_29147_10
R_RIF_OD1_11_50_13, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

13043..13267
DNA (225bp) protein (75aa)
Tax=RIFCSPLOWO2_02_RIF_OD1_11_50_13_curated
RIFCSPLOWO2_01_FULL_OD1_50_130_rifcsplowo2_01_scaffold_29147_11
R_RIF_OD1_11_50_13, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

13422..14333
DNA (912bp) protein (304aa)
miaA; tRNA delta(2)-isopentenylpyrophosphate transferase; K00791 tRNA dimethylallyltransferase [EC:2.5.1.75] id=5803396 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
tRNA delta(2)-isopentenylpyrophosphate transferase Tax=RIFCSPLOWO2_02_RIF_OD1_11_50_13_curated
tRNA delta(2)-isopentenylpyrophosphate transferase
RIFCSPLOWO2_01_FULL_OD1_50_130_rifcsplowo2_01_scaffold_29147_12
R_RIF_OD1_11_50_13, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists


comp(14473..14631)
DNA (159bp) protein (53aa)
rpmG; 50S ribosomal protein L33; K02913 large subunit ribosomal protein L33 Tax=RIFCSPLOWO2_02_RIF_OD1_11_50_13_curated
50S ribosomal protein L33; K02913 large subunit ribosomal protein L33 id=5803473 bin=OD1_GWC2_34_28 species=ACD76 genus=ACD76 taxon_order=ACD76 taxon_class=ACD76 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
rpmG; 50S ribosomal protein L33
RIFCSPLOWO2_01_FULL_OD1_50_130_rifcsplowo2_01_scaffold_29147_13
R_RIF_OD1_11_50_13, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(15032..16186)
DNA (1155bp) protein (385aa)
alanine racemase (EC:5.1.1.1); K01775 alanine racemase [EC:5.1.1.1] Tax=RIFCSPLOWO2_02_RIF_OD1_11_50_13_curated
alanine racemase (EC:5.1.1.1)
Alanine racemase id=8267239 bin=CD_OP8_4m species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
RIFCSPLOWO2_01_FULL_OD1_50_130_rifcsplowo2_01_scaffold_29147_14
Parcubacteria bacterium GW2011_GWF2_50_9, Parcubacteria, Bacteria

Not on your lists

comp(16256..16516)
DNA (261bp) protein (87aa)
hypothetical protein n=1 Tax=candidate division OD1 bacterium SCGC AAA011-G05 RepID=UPI00035CE8B7
Uncharacterized protein {ECO:0000313|EMBL:KKW20772.1}; TaxID=1618975 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWF2_50_9.;"
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_50_130_rifcsplowo2_01_scaffold_29147_15
R_RIF_OD1_11_50_13, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(16803..17084)
DNA (282bp) protein (94aa)
Tax=RIFCSPLOWO2_02_RIF_OD1_11_50_13_curated
Displaying 15 items

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