ggKbase home page

RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_14262

Search features with annotation key words

Displaying items 1-30 of 45 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_14262_1
RLO_PER_ii_55_15, PER-ii, Bacteria

Not on your lists

3..239
DNA (237bp) protein (79aa)
tryptophanyl-tRNA synthetase (EC:6.1.1.2); K01867 tryptophanyl-tRNA synthetase [EC:6.1.1.2] Tax=RIFCSPLOWO2_12_FULL_PER_ii_55_15_curated
lba:Lebu_1022 tryptophanyl-tRNA synthetase (EC:6.1.1.2); K01867 tryptophanyl-tRNA synthetase [EC:6.1.1.2] id=32117 bin=ACD28 species=ACD28 genus=ACD28 taxon_order=ACD28 taxon_class=ACD28 phylum=PER tax=ACD28 organism_group=PER (Peregrinibacteria) organism_desc=PER
tryptophanyl-tRNA synthetase
RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_14262_2
RLO_PER_ii_55_15, PER-ii, Bacteria

Not on your lists

251..943
DNA (693bp) protein (231aa)
Tax=RIFCSPLOWO2_12_FULL_PER_ii_55_15_curated
RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_14262_3
RLO_PER_ii_55_15, PER-ii, Bacteria

Not on your lists

comp(950..1654)
DNA (705bp) protein (235aa)
hypothetical protein n=1 Tax=Lewinella persica RepID=UPI0003713933
hypothetical protein; K07043 Tax=RIFCSPLOWO2_12_FULL_PER_ii_55_15_curated
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_14262_4
RLO_PER_ii_55_15, PER-ii, Bacteria

Not on your lists

1877..3118
DNA (1242bp) protein (414aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_PER_ii_55_15_curated
Aminotransferase class I and II id=2868892 bin=GWF2_OP9_related_35_9 species=Fibrobacter succinogenes genus=Fibrobacter taxon_order=Fibrobacterales taxon_class=Fibrobacteria phylum=Fibrobacteres tax=GWF2_OP9_related_35_9 organism_group=OP9 (Atribacteria)
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_14262_5
RLO_PER_ii_55_15, PER-ii, Bacteria

Not on your lists

3115..4722
DNA (1608bp) protein (536aa)
pckA; phosphoenolpyruvate carboxykinase (EC:4.1.1.49) Tax=RIFCSPLOWO2_12_FULL_PER_ii_55_15_curated
pckA; phosphoenolpyruvate carboxykinase (EC:4.1.1.49)
Phosphoenolpyruvate carboxykinase [ATP] id=4529090 bin=GWF2_Bacteroidetes_49_14 species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Bacteroidetes_49_14 organism_group=Bacteroidetes organism_desc=Good (not ab)
RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_14262_6
RLO_PER_ii_55_15, PER-ii, Bacteria

Not on your lists

comp(4730..5719)
DNA (990bp) protein (330aa)
Tax=RIFCSPLOWO2_12_FULL_PER_ii_55_15_curated
RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_14262_7
RLO_PER_ii_55_15, PER-ii, Bacteria

Not on your lists

comp(5768..6907)
DNA (1140bp) protein (380aa)
acetyl-CoA acetyltransferase; K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9] Tax=RIFCSPLOWO2_12_FULL_PER_ii_55_15_curated
Beta-ketoacyl synthase/thiolase id=15190878 bin=GWC1_OP11_49_16_COMPLETE species=Methanosarcina mazei genus=Methanosarcina taxon_order=Methanosarcinales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWC1_OP11_49_16_COMPLETE organism_group=OP11 (Microgenomates)
acetyl-CoA acetyltransferase
RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_14262_8
RLO_PER_ii_55_15, PER-ii, Bacteria

Not on your lists

comp(7280..7573)
DNA (294bp) protein (98aa)
Tax=RIFCSPLOWO2_12_FULL_PER_ii_55_15_curated
RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_14262_9
RLO_PER_ii_55_15, PER-ii, Bacteria

Not on your lists

comp(7573..8598)
DNA (1026bp) protein (342aa)
UPF0219 protein Ferp_0977 n=1 Tax=Ferroglobus placidus (strain DSM 10642 / AEDII12DO) RepID=D3RXC8_FERPA
hydroxymethylglutaryl-CoA synthase Tax=RIFCSPLOWO2_12_FULL_PER_ii_55_15_curated
hydroxymethylglutaryl-CoA synthase
RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_14262_10
RLO_PER_ii_55_15, PER-ii, Bacteria

Not on your lists

comp(8595..9893)
DNA (1299bp) protein (433aa)
3-hydroxy-3-methylglutaryl-CoA reductase (EC:1.1.1.34); K00021 hydroxymethylglutaryl-CoA reductase (NADPH) [EC:1.1.1.34] id=15190876 bin=GWC1_OP11_49_16_COMPLETE species=ACD38 genus=ACD38 taxon_order=ACD38 taxon_class=ACD38 phylum=OP11 tax=GWC1_OP11_49_16_COMPLETE organism_group=OP11 (Microgenomates)
NADP-dependent hydroxymethylglutaryl-CoA reductase Tax=RIFCSPLOWO2_12_FULL_PER_ii_55_15_curated
NADP-dependent hydroxymethylglutaryl-CoA reductase
RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_14262_11
RLO_PER_ii_55_15, PER-ii, Bacteria

Not on your lists

comp(10232..11242)
DNA (1011bp) protein (337aa)
mvaD; diphosphomevalonate decarboxylase (EC:4.1.1.33); K01597 diphosphomevalonate decarboxylase [EC:4.1.1.33] Tax=RIFCSPLOWO2_12_FULL_PER_ii_55_15_curated
atm:ANT_19910 mvaD; diphosphomevalonate decarboxylase (EC:4.1.1.33); K01597 diphosphomevalonate decarboxylase [EC:4.1.1.33] id=1246590 bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
mvaD; diphosphomevalonate decarboxylase (EC:4.1.1.33)
RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_14262_12
RLO_PER_ii_55_15, PER-ii, Bacteria

Not on your lists

comp(11202..12176)
DNA (975bp) protein (325aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2BUB6_9BACT
mevalonate kinase
Uncharacterized protein Tax=RIFCSPLOWO2_12_FULL_PER_ii_55_15_curated
RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_14262_13
RLO_PER_ii_55_15, PER-ii, Bacteria

Not on your lists

comp(12180..12896)
DNA (717bp) protein (239aa)
uppS; UDP diphosphate synthase (EC:2.5.1.31); K00806 undecaprenyl diphosphate synthase [EC:2.5.1.31] Tax=RIFCSPLOWO2_12_FULL_PER_ii_55_15_curated
hypothetical protein; K00806 undecaprenyl diphosphate synthase [EC:2.5.1.31] id=71385 bin=ACD50 species=ACD50 genus=ACD50 taxon_order=ACD50 taxon_class=ACD50 phylum=OP11 tax=ACD50 organism_group=OP11 (Microgenomates) organism_desc=OP11
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_14262_14
RLO_PER_ii_55_15, PER-ii, Bacteria

Not on your lists

comp(12889..13419)
DNA (531bp) protein (177aa)
isopentenyl-diphosphate delta-isomerase; K01823 isopentenyl-diphosphate delta-isomerase [EC:5.3.3.2] Tax=RIFCSPLOWO2_12_FULL_PER_ii_55_15_curated
Isopentenyl-diphosphate Delta-isomerase n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4C8A1_SPHS2
isopentenyl-diphosphate delta-isomerase
RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_14262_15
unknown

Not on your lists

comp(13517..13942)
DNA (426bp) protein (142aa)

This feature has no annotations

RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_14262_16
RLO_PER_ii_55_15, PER-ii, Bacteria

Not on your lists

14070..14267
DNA (198bp) protein (66aa)
Tax=RIFCSPLOWO2_12_FULL_PER_ii_55_15_curated
RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_14262_17
RLO_PER_ii_55_15, PER-ii, Bacteria

Not on your lists

comp(14477..15310)
DNA (834bp) protein (278aa)
Marine sediment metagenome DNA, contig: S01H1_S31363 Tax=RIFCSPLOWO2_12_FULL_PER_ii_55_15_curated
RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_14262_18
RLO_PER_ii_55_15, PER-ii, Bacteria

Not on your lists

comp(15349..15534)
DNA (186bp) protein (62aa)
Tax=RIFCSPLOWO2_12_FULL_PER_ii_55_15_curated
RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_14262_19
RLO_PER_ii_55_15, PER-ii, Bacteria

Not on your lists

15606..16010
DNA (405bp) protein (135aa)
Uncharacterized protein (Fragment) n=1 Tax=Anaerostipes caccae DSM 14662 RepID=B0MGN7_9FIRM
Uncharacterized protein (Fragment) Tax=RIFCSPLOWO2_12_FULL_PER_ii_55_15_curated
RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_14262_20
RLO_PER_ii_55_15, PER-ii, Bacteria

Not on your lists

comp(16090..16521)
DNA (432bp) protein (144aa)
Tax=RIFCSPLOWO2_12_FULL_PER_ii_55_15_curated
RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_14262_21
RLO_PER_ii_55_15, PER-ii, Bacteria

Not on your lists

16974..17219
DNA (246bp) protein (82aa)
Tax=RIFCSPLOWO2_12_FULL_PER_ii_55_15_curated
RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_14262_22
RLO_PER_ii_55_15, PER-ii, Bacteria

Not on your lists

comp(17343..17864)
DNA (522bp) protein (174aa)
Tax=RIFCSPLOWO2_12_FULL_PER_ii_55_15_curated
RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_14262_23
RLO_PER_ii_55_15, PER-ii, Bacteria

Not on your lists

17899..18240
DNA (342bp) protein (114aa)
Histidine triad (HIT) protein n=1 Tax=Meiothermus ruber (strain ATCC 35948 / DSM 1279 / VKM B-1258 / 21) RepID=D3PP49_MEIRD
histidine triad (HIT) protein Tax=RIFCSPLOWO2_12_FULL_PER_ii_55_15_curated
histidine triad (HIT) protein
RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_14262_24
RLO_PER_ii_55_15, PER-ii, Bacteria

Not on your lists

comp(18244..19551)
DNA (1308bp) protein (436aa)
rpfA; 30S ribosomal protein S1 Tax=RIFCSPLOWO2_12_FULL_PER_ii_55_15_curated
RNA binding S1 domain-containing protein; K02945 small subunit ribosomal protein S1 id=5097064 bin=PER_GWF2_39_17 species=PER_GWF2_39_17 genus=PER_GWF2_39_17 taxon_order=PER_GWF2_39_17 taxon_class=PER_GWF2_39_17 phylum=PER tax=PER_GWF2_39_17 organism_group=PER (Peregrinibacteria)
RNA binding S1 protein
RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_14262_25
RLO_PER_ii_55_15, PER-ii, Bacteria

Not on your lists

comp(19697..20413)
DNA (717bp) protein (239aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_PER_ii_55_15_curated
hypothetical protein id=5096900 bin=PER_GWF2_39_17 species=PER_GWF2_39_17 genus=PER_GWF2_39_17 taxon_order=PER_GWF2_39_17 taxon_class=PER_GWF2_39_17 phylum=PER tax=PER_GWF2_39_17 organism_group=PER (Peregrinibacteria)
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_14262_26
RLO_PER_ii_55_15, PER-ii, Bacteria

Not on your lists

comp(20410..20886)
DNA (477bp) protein (159aa)
seg Tax=RIFCSPLOWO2_12_FULL_PER_ii_55_15_curated
seg id=5098672 bin=PER_GWF2_43_18 species=PER_GWF2_42_17 genus=PER_GWF2_42_17 taxon_order=PER_GWF2_42_17 taxon_class=PER_GWF2_42_17 phylum=PER tax=PER_GWF2_43_18 organism_group=PER (Peregrinibacteria)
RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_14262_27
RLO_PER_ii_55_15, PER-ii, Bacteria

Not on your lists

comp(20894..23530)
DNA (2637bp) protein (879aa)
chaperone ATPase Tax=RIFCSPLOWO2_12_FULL_PER_ii_55_15_curated
ATPase AAA; K03696 ATP-dependent Clp protease ATP-binding subunit ClpC id=5097961 bin=PER_GWF2_43_18 species=PER_GWF2_42_17 genus=PER_GWF2_42_17 taxon_order=PER_GWF2_42_17 taxon_class=PER_GWF2_42_17 phylum=PER tax=PER_GWF2_43_18 organism_group=PER (Peregrinibacteria)
chaperone ATPase
RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_14262_28
RLO_PER_ii_55_15, PER-ii, Bacteria

Not on your lists

comp(23592..24854)
DNA (1263bp) protein (421aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_PER_ii_55_15_curated
hypothetical protein id=5091229 bin=GWC2_PER_33_13 species=PER_GWC2_33_13 genus=PER_GWC2_33_13 taxon_order=PER_GWC2_33_13 taxon_class=PER_GWC2_33_13 phylum=PER tax=GWC2_PER_33_13 organism_group=PER (Peregrinibacteria) organism_desc=No RuBisCO in this genome
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_14262_29
RLO_PER_ii_55_15, PER-ii, Bacteria

Not on your lists

comp(24851..25192)
DNA (342bp) protein (114aa)
seg 4..18 Tax=RIFCSPLOWO2_12_FULL_PER_ii_55_15_curated
seg 4..18 id=32466 bin=ACD28 species=ACD28 genus=ACD28 taxon_order=ACD28 taxon_class=ACD28 phylum=PER tax=ACD28 organism_group=PER (Peregrinibacteria) organism_desc=PER
RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_14262_30
RLO_PER_ii_55_15, PER-ii, Bacteria

Not on your lists


comp(25417..26160)
DNA (744bp) protein (248aa)
rplA; 50S ribosomal protein L1; K02863 large subunit ribosomal protein L1 Tax=RIFCSPLOWO2_12_FULL_PER_ii_55_15_curated
50S ribosomal protein L1; K02863 large subunit ribosomal protein L1 id=5095805 bin=PER_GWF2_38_29 species=PER_GWF2_38_31 genus=PER_GWF2_38_31 taxon_order=PER_GWF2_38_31 taxon_class=PER_GWF2_38_31 phylum=PER tax=PER_GWF2_38_29 organism_group=PER (Peregrinibacteria)
50S ribosomal protein L1
Displaying items 1-30 of 45 in total

View Taxonomy