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ACD11_21

Alias: ACD11_759.41416.28

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD11_21_1

Not on your lists

comp(291..962)
DNA (672bp) protein (224aa)
paaX; repressor in ring oxydation complex/phenylacetic acid degradation pathway-like protein (paaX)
coiled-coil (db=Coil db_id=coil from=3 to=24 evalue=NA)
transmembrane_regions (db=TMHMM db_id=tmhmm from=47 to=68)
seg (db=Seg db_id=seg from=4 to=25)
ACD11_21_2

Not on your lists

comp(1407..1607)
DNA (201bp) protein (67aa)
1407..1607 - (rbs_motif=TAA rbs_spacer=12bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE15529.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD11_21_3

Not on your lists

comp(1669..2592)
DNA (924bp) protein (308aa)
hypothetical protein
seg (db=Seg db_id=seg from=77 to=91)
hypothetical protein alias=ACD11_759.41416.28G0003,ACD11_759.41416.28_3,ACD11_C00021G00003 id=3249 tax=ACD11 species=Naegleria gruberi genus=Naegleria taxon_order=Schizopyrenida taxon_class=Heterolobosea phylum=unknown organism_group=OD1-i organism_desc=OD1-i
Uncharacterized protein {ECO:0000313|EMBL:EKE15530.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD11_21_4

Not on your lists


2837..3301
DNA (465bp) protein (155aa)
seg (db=Seg db_id=seg from=67 to=84)
seg (db=Seg db_id=seg from=128 to=152)
coiled-coil (db=Coil db_id=coil from=68 to=89 evalue=NA)
Ribosomal protein S6 (db=superfamily db_id=SSF54995 from=1 to=105 evalue=2.9e-12 interpro_id=IPR000529 interpro_description=Ribosomal protein S6 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
ACD11_21_5

Not on your lists

3411..3881
DNA (471bp) protein (157aa)
ssb; ssDNA-binding protein controls activity of RecBCD nuclease
Single-stranded DNA-binding protein n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DRP8_EIKCO (db=UNIREF evalue=5.0e-33 bit_score=143.0 identity=54.4 coverage=75.1592356687898)
Nucleic acid-binding proteins (db=superfamily db_id=SSF50249 from=1 to=156 evalue=1.0e-47 interpro_id=IPR016027 interpro_description=Nucleic acid-binding, OB-fold-like)
ssb: single-strand binding protein (db=HMMTigr db_id=TIGR00621 from=1 to=156 evalue=3.2e-47 interpro_id=IPR011344 interpro_description=Single-strand DNA-binding GO=Molecular Function: single-stranded DNA binding (GO:0003697), Biological Process: DNA replication (GO:0006260))
ACD11_21_6

Not on your lists


3906..4112
DNA (207bp) protein (69aa)
30S ribosomal protein S18
30S RIBOSOMAL PROTEIN S18 (db=HMMPanther db_id=PTHR13479:SF16 from=2 to=68 evalue=2.7e-25)
30S RIBOSOMAL PROTEIN S18 (db=HMMPanther db_id=PTHR13479 from=2 to=68 evalue=2.7e-25 interpro_id=IPR001648 interpro_description=Ribosomal protein S18 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
S18: ribosomal protein S18 (db=HMMTigr db_id=TIGR00165 from=1 to=68 evalue=2.0e-23 interpro_id=IPR001648 interpro_description=Ribosomal protein S18 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD11_21_7

Not on your lists

4126..4683
DNA (558bp) protein (186aa)
translation elongation factor P
efp: translation elongation factor P (db=HMMTigr db_id=TIGR00038 from=2 to=185 evalue=1.6e-85 interpro_id=IPR011768 interpro_description=Translation elongation factor P GO=Molecular Function: translation elongation factor activity (GO:0003746), Cellular Component: cytoplasm (GO:0005737), Biological Process: translational elongation (GO:0006414))
Translation elongation factor P (db=HMMPIR db_id=PIRSF005901 from=1 to=185 evalue=5.2e-52 interpro_id=IPR020599 interpro_description=Translation elongation factor P/YeiP)
no description (db=HMMSmart db_id=SM00841 from=129 to=184 evalue=5.5e-25 interpro_id=IPR015365 interpro_description=Elongation factor P, C-terminal)
ACD11_21_8

Not on your lists


comp(4787..5824)
DNA (1038bp) protein (346aa)
recA; recombinase A
recA; recombinase A
Protein recA n=2 Tax=Sphingomonadaceae RepID=D4Z683_SPHJU (db=UNIREF evalue=9.0e-105 bit_score=383.0 identity=67.4 coverage=91.9075144508671)
seg (db=Seg db_id=seg from=153 to=166)
ACD11_21_9

Not on your lists

comp(5926..6915)
DNA (990bp) protein (330aa)
hypothetical protein
seg (db=Seg db_id=seg from=119 to=134)
seg (db=Seg db_id=seg from=85 to=103)
transmembrane_regions (db=TMHMM db_id=tmhmm from=111 to=133)
ACD11_21_10

Not on your lists

comp(7006..9318)
DNA (2313bp) protein (771aa)
DNA translocase FtsK
DNA translocase FtsK
putative DNA translocase n=1 Tax=candidate division TM7 single-cell isolate TM7a RepID=UPI000174306C (db=UNIREF evalue=1.0e-129 bit_score=468.0 identity=50.5 coverage=62.905317769131)
transmembrane_regions (db=TMHMM db_id=tmhmm from=61 to=83)
ACD11_21_11

Not on your lists

comp(9326..9421)
DNA (96bp) protein (32aa)
9326..9421 - (rbs_motif=TAAA rbs_spacer=9bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE15538.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD11_21_12

Not on your lists

comp(9515..10177)
DNA (663bp) protein (221aa)
transcriptional repressor, LexA family (EC:3.4.21.88); K01356 repressor LexA [EC:3.4.21.88] (db=KEGG evalue=8.0e-14 bit_score=80.5 identity=30.59 coverage=89.5927601809955)
LexA/Signal peptidase (db=superfamily db_id=SSF51306 from=81 to=214 evalue=2.3e-19 interpro_id=IPR015927 interpro_description=Peptidase S24/S26A/S26B/S26C)
no description (db=Gene3D db_id=G3DSA:2.10.109.10 from=88 to=214 evalue=5.9e-12 interpro_id=IPR011056 interpro_description=Peptidase S24/S26A/S26B/S26C, beta-ribbon domain)
Peptidase_S24 (db=HMMPfam db_id=PF00717 from=129 to=199 evalue=2.1e-10 interpro_id=IPR019759 interpro_description=Peptidase S24/S26A/S26B, conserved region)
ACD11_21_13

Not on your lists

comp(10273..10416)
DNA (144bp) protein (48aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=32)
Uncharacterized protein {ECO:0000313|EMBL:EKE15540.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD11_21_14

Not on your lists

comp(10558..14136)
DNA (3579bp) protein (1193aa)
DNA-directed RNA polymerase, beta' subunit n=1 Tax=Halothermothrix orenii H 168 RepID=B8D0B7_HALOH (db=UNIREF evalue=0.0 bit_score=1239.0 identity=53.5 coverage=94.6353730092205)
DNA-directed RNA polymerase beta' subunit
DNA-directed RNA polymerase beta' subunit
seg (db=Seg db_id=seg from=159 to=185)
ACD11_21_15

Not on your lists

comp(14187..17612)
DNA (3426bp) protein (1142aa)
DNA-directed RNA polymerase subunit beta n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C2J8_SPHTD (db=UNIREF evalue=0.0 bit_score=1286.0 identity=57.08 coverage=95.2714535901926)
DNA-directed RNA polymerase subunit beta
DNA-directed RNA polymerase subunit beta
seg (db=Seg db_id=seg from=303 to=312)
ACD11_21_16

Not on your lists

comp(18079..19221)
DNA (1143bp) protein (381aa)
hypothetical protein
Phosphoribosylformylglycinamidine cyclo-ligase n=1 Tax=Staphylococcus warneri L37603 RepID=C4W905_STAWA (db=UNIREF evalue=2.0e-19 bit_score=100.0 identity=26.54 coverage=87.9265091863517)
PurM C-terminal domain-like (db=superfamily db_id=SSF56042 from=187 to=370 evalue=9.1e-14 interpro_id=IPR010918 interpro_description=AIR synthase related protein, C-terminal)
no description (db=Gene3D db_id=G3DSA:3.90.650.10 from=187 to=370 evalue=1.5e-13)
ACD11_21_17

Not on your lists

comp(19518..20435)
DNA (918bp) protein (306aa)
hypothetical protein
seg (db=Seg db_id=seg from=131 to=142)
transmembrane_regions (db=TMHMM db_id=tmhmm from=41 to=58)
transmembrane_regions (db=TMHMM db_id=tmhmm from=71 to=93)
ACD11_21_18

Not on your lists

comp(20747..21049)
DNA (303bp) protein (101aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=24)
Uncharacterized protein {ECO:0000313|EMBL:EKE15545.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD11_21_19

Not on your lists

comp(21193..21651)
DNA (459bp) protein (153aa)
Putative uncharacterized protein n=2 Tax=bacterium Ellin514 RepID=B9XKC2_9BACT (db=UNIREF evalue=9.0e-39 bit_score=162.0 identity=54.79 coverage=94.1176470588235)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
transmembrane_regions (db=TMHMM db_id=tmhmm from=118 to=140)
ACD11_21_20

Not on your lists

comp(21687..21824)
DNA (138bp) protein (46aa)
21687..21824 - (rbs_motif=TAAAA rbs_spacer=11bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE15547.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD11_21_21

Not on your lists

comp(21858..22382)
DNA (525bp) protein (175aa)
Bifunctional deaminase-reductase protein
seg (db=Seg db_id=seg from=142 to=157)
Dihydrofolate reductase-like (db=superfamily db_id=SSF53597 from=1 to=172 evalue=1.6e-32)
no description (db=Gene3D db_id=G3DSA:3.40.430.10 from=1 to=164 evalue=2.3e-25)
ACD11_21_22

Not on your lists

comp(22533..22799)
DNA (267bp) protein (89aa)
22533..22799 - (rbs_motif=TAAAA rbs_spacer=10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE15549.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD11_21_23

Not on your lists

comp(22812..23579)
DNA (768bp) protein (256aa)
N-acetylmuramyl-L-alanine amidase, negative regulator of ampc, ampd
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=24)
seg (db=Seg db_id=seg from=5 to=14)
N-acetylmuramoyl-L-alanine amidase-like (db=superfamily db_id=SSF55846 from=102 to=255 evalue=1.4e-37 interpro_id=IPR002502 interpro_description=N-acetylmuramoyl-L-alanine amidase, family 2 GO=Molecular Function: N-acetylmuramoyl-L-alanine amidase activity (GO:0008745), Biological Process: peptidoglycan catabolic process (GO:0009253))
ACD11_21_24

Not on your lists

comp(23589..24362)
DNA (774bp) protein (258aa)
putative periplasmic immunogenic protein
coiled-coil (db=Coil db_id=coil from=67 to=95 evalue=NA)
transmembrane_regions (db=TMHMM db_id=tmhmm from=17 to=36)
seg (db=Seg db_id=seg from=17 to=33)
ACD11_21_25

Not on your lists

comp(24438..25496)
DNA (1059bp) protein (353aa)
24438..25496 - (rbs_motif=AATAA rbs_spacer=4bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE15552.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD11_21_26

Not on your lists

comp(25653..25772)
DNA (120bp) protein (40aa)
seg (db=Seg db_id=seg from=28 to=39)
Uncharacterized protein {ECO:0000313|EMBL:EKE15553.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD11_21_27

Not on your lists

comp(25829..27058)
DNA (1230bp) protein (410aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
seg (db=Seg db_id=seg from=58 to=67)
seg (db=Seg db_id=seg from=121 to=134)
seg (db=Seg db_id=seg from=369 to=380)
ACD11_21_28

Not on your lists

27504..28328
DNA (825bp) protein (275aa)
DNA-damage-inducible protein d
DNA-damage-inducible protein d
Prophage antirepressor n=4 Tax=Faecalibacterium prausnitzii RepID=C7H9F3_9FIRM (db=UNIREF evalue=1.0e-88 bit_score=329.0 identity=64.42 coverage=96.3636363636364)
coiled-coil (db=Coil db_id=coil from=197 to=218 evalue=NA)
ACD11_21_29

Not on your lists

28358..28873
DNA (516bp) protein (172aa)
seg (db=Seg db_id=seg from=10 to=23)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
coiled-coil (db=Coil db_id=coil from=58 to=79 evalue=NA)
Uncharacterized protein {ECO:0000313|EMBL:EKE15515.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD11_21_30

Not on your lists

comp(29158..29547)
DNA (390bp) protein (130aa)
rbo; superoxide reductase (EC:1.15.1.2)
seg (db=Seg db_id=seg from=104 to=119)
dfx_rbo: desulfoferrodoxin (db=HMMTigr db_id=TIGR00320 from=4 to=129 evalue=1.1e-57 interpro_id=IPR004793 interpro_description=Desulfoferrodoxin)
no description (db=Gene3D db_id=G3DSA:2.60.40.730 from=5 to=128 evalue=2.6e-42)
Displaying items 1-30 of 41 in total

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