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ACD11_23

Alias: ACD11_461.21898.31

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD11_23_1

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2..448
DNA (447bp) protein (149aa)
translation initiation inhibitor
UPF0076 (db=PatternScan db_id=PS01094 from=120 to=138 evalue=0.0 interpro_id=IPR019897 interpro_description=YjgF-like protein, conserved site)
TIGR00004: putative endoribonuclease L-PSP (db=HMMTigr db_id=TIGR00004 from=20 to=144 evalue=1.5e-69 interpro_id=IPR006056 interpro_description=YjgF-like protein)
TRANSLATION INITIATION INHIBITOR (db=HMMPanther db_id=PTHR11803 from=23 to=145 evalue=1.3e-44 interpro_id=IPR006175 interpro_description=Endoribonuclease L-PSP)
ACD11_23_2

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445..1692
DNA (1248bp) protein (416aa)
threonine dehydratase
threonine dehydratase
Threonine dehydratase n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZNB3_9BACT (db=UNIREF evalue=1.0e-126 bit_score=457.0 identity=55.56 coverage=97.1153846153846)
seg (db=Seg db_id=seg from=178 to=193)
ACD11_23_3

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1734..3524
DNA (1791bp) protein (597aa)
DNA primase (EC:2.7.7.-)
DNA primase (EC:2.7.7.-)
DNA primase n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MHB3_RHOM4 (db=UNIREF evalue=1.0e-81 bit_score=308.0 identity=38.04 coverage=71.356783919598)
seg (db=Seg db_id=seg from=549 to=560)
ACD11_23_4

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3599..4975
DNA (1377bp) protein (459aa)
RpoD family RNA polymerase sigma-70 subunit
RpoD family RNA polymerase sigma-70 subunit
RNA polymerase sigma factor n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A1Z3_NATTJ (db=UNIREF evalue=1.0e-96 bit_score=357.0 identity=57.56 coverage=77.3420479302832)
coiled-coil (db=Coil db_id=coil from=119 to=140 evalue=NA)
ACD11_23_5

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5269..6336
DNA (1068bp) protein (356aa)
D-alanine--D-alanine ligase
DALA_DALA_LIGASE_2 (db=PatternScan db_id=PS00844 from=288 to=317 evalue=0.0 interpro_id=IPR000291 interpro_description=D-alanine--D-alanine ligase/VANA/B/C, conserved site GO=Molecular Function: D-alanine-D-alanine ligase activity (GO:0008716), Biological Process: peptidoglycan biosynthetic process (GO:0009252))
DALA_DALA_LIGASE_1 (db=PatternScan db_id=PS00843 from=104 to=115 evalue=0.0 interpro_id=IPR000291 interpro_description=D-alanine--D-alanine ligase/VANA/B/C, conserved site GO=Molecular Function: D-alanine-D-alanine ligase activity (GO:0008716), Biological Process: peptidoglycan biosynthetic process (GO:0009252))
D_ala_D_alaTIGR: D-alanine--D-alanine (db=HMMTigr db_id=TIGR01205 from=10 to=347 evalue=1.7e-117 interpro_id=IPR005905 interpro_description=D-alanine--D-alanine ligase GO=Cellular Component: cytoplasm (GO:0005737), Molecular Function: D-alanine-D-alanine ligase activity (GO:0008716), Biological Process: peptidoglycan biosynthetic process (GO:0009252))
starts peptidoglycan biosynthesis from D-alanine Jill Banfield (11/14/12)
ACD11_23_6

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comp(6426..6668)
DNA (243bp) protein (81aa)
hypothetical protein
DUF1428 (db=HMMPfam db_id=PF07237 from=3 to=67 evalue=8.0e-15 interpro_id=IPR009874 interpro_description=Protein of unknown function DUF1428)
protein of unknown function DUF1428 alias=ACD11_C00023G00006,ACD11_461.21898.31G0006,ACD11_461.21898.31_6 id=3278 tax=ACD11 species=Methanosphaerula palustris genus=Methanosphaerula taxon_order=Methanomicrobiales taxon_class=Methanomicrobia phylum=Euryarchaeota organism_group=OD1-i organism_desc=OD1-i
Uncharacterized protein {ECO:0000313|EMBL:EKE15666.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD11_23_7

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comp(6918..7133)
DNA (216bp) protein (72aa)
6918..7133 - (rbs_motif=TAA rbs_spacer=11bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE15667.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD11_23_8

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comp(7145..7726)
DNA (582bp) protein (194aa)
hypothetical protein (db=KEGG evalue=6.0e-14 bit_score=80.5 identity=34.0 coverage=75.2577319587629)
seg (db=Seg db_id=seg from=3 to=18)
Uncharacterized protein {ECO:0000313|EMBL:EKE15668.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein alias=ACD11_C00023G00008,ACD11_461.21898.31G0008,ACD11_461.21898.31_8 id=3282 tax=ACD11 species=unknown genus=Prevotella taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes organism_group=OD1-i organism_desc=OD1-i
ACD11_23_9

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comp(7737..8186)
DNA (450bp) protein (150aa)
NUDIX hydrolase
NUDIX_BOX (db=PatternScan db_id=PS00893 from=36 to=57 evalue=0.0 interpro_id=IPR020084 interpro_description=NUDIX hydrolase, conserved site GO=Molecular Function: hydrolase activity (GO:0016787))
Nudix (db=superfamily db_id=SSF55811 from=1 to=146 evalue=5.6e-23 interpro_id=IPR015797 interpro_description=NUDIX hydrolase domain-like GO=Molecular Function: hydrolase activity (GO:0016787))
no description (db=Gene3D db_id=G3DSA:3.90.79.10 from=7 to=141 evalue=6.2e-22 interpro_id=IPR000086 interpro_description=NUDIX hydrolase domain GO=Molecular Function: hydrolase activity (GO:0016787))
ACD11_23_10

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comp(8193..9266)
DNA (1074bp) protein (358aa)
putative PLP-dependent enzyme possibly involved in cell wall biogenesis
putative PLP-dependent enzyme possibly involved in cell wall biogenesis
Aspartate aminotransferase n=2 Tax=Pseudomonas cichorii RepID=Q20IQ1_PSECI (db=UNIREF evalue=4.0e-89 bit_score=332.0 identity=49.85 coverage=92.1787709497207)
seg (db=Seg db_id=seg from=15 to=26)
ACD11_23_11

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comp(9289..10068)
DNA (780bp) protein (260aa)
radical SAM protein
Radical SAM enzymes (db=superfamily db_id=SSF102114 from=16 to=257 evalue=1.5e-40)
Radical_SAM (db=HMMPfam db_id=PF04055 from=19 to=176 evalue=9.8e-23 interpro_id=IPR007197 interpro_description=Radical SAM GO=Molecular Function: catalytic activity (GO:0003824), Molecular Function: iron-sulfur cluster binding (GO:0051536))
no description (db=HMMSmart db_id=SM00729 from=14 to=213 evalue=0.00011 interpro_id=IPR006638 interpro_description=Elongator protein 3/MiaB/NifB)
ACD11_23_12

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comp(10312..10788)
DNA (477bp) protein (159aa)
benzodiazepine receptor TspO
transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=31)
transmembrane_regions (db=TMHMM db_id=tmhmm from=46 to=68)
transmembrane_regions (db=TMHMM db_id=tmhmm from=80 to=102)
ACD11_23_13

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comp(10785..11108)
DNA (324bp) protein (108aa)
10785..11108 - (rbs_motif=TAAAA rbs_spacer=7bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE15673.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD11_23_14

Not on your lists

comp(11111..11461)
DNA (351bp) protein (117aa)
coiled-coil (db=Coil db_id=coil from=20 to=41 evalue=NA)
seg (db=Seg db_id=seg from=17 to=34)
Uncharacterized protein {ECO:0000313|EMBL:EKE15674.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD11_23_15

Not on your lists

comp(11510..11971)
DNA (462bp) protein (154aa)
11510..11971 - (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKE15675.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD11_23_16

Not on your lists

comp(12030..14324)
DNA (2295bp) protein (765aa)
KAP P-loop domain protein
KAP P-loop domain protein
KAP P-loop domain protein n=1 Tax=Methanohalophilus mahii DSM 5219 RepID=D5E6N0_METMS (db=UNIREF evalue=0.0 bit_score=703.0 identity=56.15 coverage=98.1699346405229)
seg (db=Seg db_id=seg from=662 to=673)
ACD11_23_17

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comp(14414..14719)
DNA (306bp) protein (102aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4L0X9_9FIRM (db=UNIREF evalue=4.0e-08 bit_score=60.5 identity=50.79 coverage=58.8235294117647)
Uncharacterized protein {ECO:0000313|EMBL:EKE15677.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Domain of unknown function (DUF955).
ACD11_23_18

Not on your lists

comp(14721..15488)
DNA (768bp) protein (256aa)
Dam-replacing family protein
Dam-replacing family protein n=2 Tax=Francisella novicida RepID=A0Q8J0_FRATN (db=UNIREF evalue=4.0e-79 bit_score=297.0 identity=53.33 coverage=99.21875)
DRP (db=HMMPfam db_id=PF06044 from=1 to=252 evalue=9.3e-108 interpro_id=IPR010324 interpro_description=Dam-replacing)
Dam-replacing family protein {ECO:0000313|EMBL:EKE15678.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD11_23_19

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comp(15524..16879)
DNA (1356bp) protein (452aa)
seg (db=Seg db_id=seg from=144 to=157)
seg (db=Seg db_id=seg from=311 to=329)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=14 to=346 evalue=2.0e-12)
Arch_ATPase (db=HMMPfam db_id=PF01637 from=33 to=118 evalue=2.8e-06 interpro_id=IPR011579 interpro_description=ATPase domain, prokaryote GO=Molecular Function: ATP binding (GO:0005524))
ACD11_23_20

Not on your lists

17374..18126
DNA (753bp) protein (251aa)
multi-sensor signal transduction histidine kinase
coiled-coil (db=Coil db_id=coil from=219 to=250 evalue=NA)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
transmembrane_regions (db=TMHMM db_id=tmhmm from=180 to=202)
ACD11_23_21

Not on your lists

18316..19302
DNA (987bp) protein (329aa)
cphA; Cyanophycin synthetase (EC:6.3.2.29 6.3.2.30)
Glutathione synthetase ATP-binding domain-like (db=superfamily db_id=SSF56059 from=66 to=327 evalue=1.1e-24)
RimK (db=HMMPfam db_id=PF08443 from=63 to=176 evalue=1.1e-09 interpro_id=IPR013651 interpro_description=ATP-grasp fold, RimK-type)
RIBOSOMAL PROTEIN S6 MODIFICATION PROTEIN (db=HMMPanther db_id=PTHR21621 from=54 to=175 evalue=0.00062)
ACD11_23_22

Not on your lists

19422..20393
DNA (972bp) protein (324aa)
hypothetical protein
hypothetical protein
Permease n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HQT6_9FIRM (db=UNIREF evalue=3.0e-84 bit_score=315.0 identity=57.32 coverage=96.6049382716049)
transmembrane_regions (db=TMHMM db_id=tmhmm from=299 to=321)
ACD11_23_23

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20560..21888
DNA (1329bp) protein (443aa)
purC; phosphoribosylaminoimidazole-succinocarboxamide synthase (EC:6.3.2.6)
PURINE BIOSYNTHESIS PROTEIN 6, PUR6 (db=HMMPanther db_id=PTHR11609:SF2 from=32 to=426 evalue=6.9e-30)
PURINE BIOSYNTHESIS PROTEIN 6/7, PUR6/7 (db=HMMPanther db_id=PTHR11609 from=32 to=426 evalue=6.9e-30 interpro_id=IPR001636 interpro_description=SAICAR synthetase GO=Molecular Function: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity (GO:0004639), Biological Process: purine nucleotide biosynthetic process (GO:0006164))
SAICAR synthase-like (db=superfamily db_id=SSF56104 from=18 to=300 evalue=8.5e-29)
Displaying 23 items

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