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ACD11_38

Alias: ACD11_2948.35811.26

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD11_38_1

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comp(184..2247)
DNA (2064bp) protein (688aa)
1A family penicillin-binding protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=43)
PBP_1a_fam: penicillin-binding protein, 1A (db=HMMTigr db_id=TIGR02074 from=77 to=621 evalue=3.3e-177 interpro_id=IPR011816 interpro_description=Penicillin-binding protein 1A GO=Molecular Function: peptidase activity (GO:0008233), Biological Process: peptidoglycan biosynthetic process (GO:0009252), Molecular Function: transferase activity, transferring pentosyl groups (GO:0016763), Biological Process: response to antibiotic (GO:0046677))
beta-lactamase/transpeptidase-like (db=superfamily db_id=SSF56601 from=223 to=636 evalue=3.0e-98 interpro_id=IPR012338 interpro_description=Beta-lactamase-type transpeptidase fold)
ACD11_38_2

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comp(2424..4211)
DNA (1788bp) protein (596aa)
GTP-binding protein TypA/BipA
GTP-binding protein TypA/BipA
GTP-binding protein TypA n=18 Tax=Campylobacter RepID=Q5HXC0_CAMJR (db=UNIREF evalue=0.0 bit_score=650.0 identity=53.18 coverage=99.3288590604027)
EFACTOR_GTP (db=PatternScan db_id=PS00301 from=38 to=53 evalue=0.0 interpro_id=IPR000795 interpro_description=Protein synthesis factor, GTP-binding GO=Molecular Function: GTPase activity (GO:0003924), Molecular Function: GTP binding (GO:0005525))
ACD11_38_3

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4470..4733
DNA (264bp) protein (88aa)
heavy metal transport/detoxification protein (db=KEGG evalue=2.0e-09 bit_score=64.3 identity=44.83 coverage=92.0454545454545)
HMA, heavy metal-associated domain (db=superfamily db_id=SSF55008 from=1 to=66 evalue=2.0e-07 interpro_id=IPR006121 interpro_description=Heavy metal transport/detoxification protein GO=Biological Process: metal ion transport (GO:0030001), Molecular Function: metal ion binding (GO:0046872))
HMA (db=HMMPfam db_id=PF00403 from=3 to=59 evalue=5.3e-07 interpro_id=IPR006121 interpro_description=Heavy metal transport/detoxification protein GO=Biological Process: metal ion transport (GO:0030001), Molecular Function: metal ion binding (GO:0046872))
HMA_2 (db=ProfileScan db_id=PS50846 from=1 to=63 evalue=9.37 interpro_id=IPR006121 interpro_description=Heavy metal transport/detoxification protein GO=Biological Process: metal ion transport (GO:0030001), Molecular Function: metal ion binding (GO:0046872))
ACD11_38_4

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comp(4743..5315)
DNA (573bp) protein (191aa)
engB; putative GTP-binding protein EngB
GTPase_YsxC: ribosome biogenesis GTP-bind (db=HMMTigr db_id=TIGR03598 from=6 to=188 evalue=1.1e-71 interpro_id=IPR019987 interpro_description=GTP-binding protein, ribosome biogenesis, YsxC)
GTP-BINDING PROTEIN ENGB-RELATED (db=HMMPanther db_id=PTHR11649:SF13 from=18 to=185 evalue=1.4e-45)
MSS1/TRME-RELATED GTP-BINDING PROTEIN (db=HMMPanther db_id=PTHR11649 from=18 to=185 evalue=1.4e-45)
ACD11_38_5

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comp(5496..6086)
DNA (591bp) protein (197aa)
ECF subfamily RNA polymerase sigma factor
SIGMA70_ECF (db=PatternScan db_id=PS01063 from=58 to=89 evalue=0.0 interpro_id=IPR000838 interpro_description=RNA polymerase sigma factor 70, ECF, conserved site GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=30 to=193 evalue=9.5e-39 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=10 to=123 evalue=2.0e-19 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
ACD11_38_6

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comp(6261..6404)
DNA (144bp) protein (48aa)
coiled-coil (db=Coil db_id=coil from=1 to=22 evalue=NA)
transmembrane_regions (db=TMHMM db_id=tmhmm from=24 to=46)
seg (db=Seg db_id=seg from=17 to=27)
Uncharacterized protein {ECO:0000313|EMBL:EKE15925.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD11_38_7

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comp(6898..7179)
DNA (282bp) protein (94aa)
RNP-1 like RNA-binding protein n=1 Tax=bacterium Ellin514 RepID=B9XRV6_9BACT (db=UNIREF evalue=7.0e-24 bit_score=112.0 identity=60.47 coverage=90.4255319148936)
RNA-binding proteins (RRM domain)
RNA-BINDING PROTEIN (db=HMMPanther db_id=PTHR10432 from=4 to=84 evalue=6.4e-32)
GLYCINE-RICH RNA-BINDING PROTEIN (db=HMMPanther db_id=PTHR10432:SF31 from=4 to=84 evalue=6.4e-32 interpro_id=IPR015465 interpro_description=RNA recognition motif, glycine rich protein)
ACD11_38_8

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comp(7354..7620)
DNA (267bp) protein (89aa)
coiled-coil (db=Coil db_id=coil from=63 to=84 evalue=NA)
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=37)
seg (db=Seg db_id=seg from=6 to=28)
DUF2078 (db=HMMPfam db_id=PF09851 from=8 to=88 evalue=1.2e-23 interpro_id=IPR018649 interpro_description=Protein of unknown function DUF2078, membrane)
ACD11_38_9

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comp(7714..9603)
DNA (1890bp) protein (630aa)
copB; copper-exporting P-type ATPase B (EC:3.6.3.4)
copB; copper-exporting P-type ATPase B (EC:3.6.3.4)
Copper-translocating P-type ATPase n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZIH4_9BACT (db=UNIREF evalue=0.0 bit_score=712.0 identity=58.28 coverage=99.0476190476191)
seg (db=Seg db_id=seg from=240 to=250)
ACD11_38_10

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comp(9743..11134)
DNA (1392bp) protein (464aa)
hypothetical protein
hypothetical protein
Putative uncharacterized protein n=1 Tax=Methanococcus maripaludis RepID=Q6M013_METMP (db=UNIREF evalue=4.0e-102 bit_score=375.0 identity=46.87 coverage=94.8275862068966)
seg (db=Seg db_id=seg from=381 to=401)
ACD11_38_11

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comp(11213..12475)
DNA (1263bp) protein (421aa)
HI0933 family protein n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=D4H1X4_DENA2 (db=UNIREF evalue=8.0e-104 bit_score=380.0 identity=46.21 coverage=96.437054631829)
hypothetical protein
hypothetical protein
TIGR00275: flavoprotein, HI0933 family (db=HMMTigr db_id=TIGR00275 from=10 to=412 evalue=7.7e-167 interpro_id=IPR004792 interpro_description=Conserved hypothetical protein CHP00275, flavoprotein HI0933-like)
ACD11_38_12

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12867..13832
DNA (966bp) protein (322aa)
obgE; GTPase ObgE
seg (db=Seg db_id=seg from=270 to=291)
seg (db=Seg db_id=seg from=30 to=47)
seg (db=Seg db_id=seg from=9 to=21)
ACD11_38_13

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comp(13872..14237)
DNA (366bp) protein (122aa)
hypothetical protein
Uncharacterised conserved protein, UCP035652 type (db=HMMPIR db_id=PIRSF035652 from=6 to=120 evalue=9.7e-29 interpro_id=IPR012657 interpro_description=Conserved hypothetical protein CHP02436)
TIGR02436: conserved hypothetical protein T (db=HMMTigr db_id=TIGR02436 from=12 to=121 evalue=2.3e-15 interpro_id=IPR012657 interpro_description=Conserved hypothetical protein CHP02436)
Ribosomal_S23p (db=HMMPfam db_id=PF05635 from=18 to=111 evalue=1.4e-09 interpro_id=IPR008815 interpro_description=23S rRNA-associated protein)
ACD11_38_14

Not on your lists

comp(14321..22963)
DNA (8643bp) protein (2881aa)
putative secreted protein containing fibronectin type III protein
seg (db=Seg db_id=seg from=63 to=74)
seg (db=Seg db_id=seg from=179 to=192)
seg (db=Seg db_id=seg from=659 to=672)
ACD11_38_15

Not on your lists

comp(23081..29299)
DNA (6219bp) protein (2073aa)
hypothetical protein
seg (db=Seg db_id=seg from=1599 to=1612)
seg (db=Seg db_id=seg from=1515 to=1526)
seg (db=Seg db_id=seg from=1205 to=1217)
ACD11_38_16

Not on your lists

comp(29339..30976)
DNA (1638bp) protein (546aa)
seg (db=Seg db_id=seg from=384 to=397)
seg (db=Seg db_id=seg from=322 to=340)
transmembrane_regions (db=TMHMM db_id=tmhmm from=63 to=85)
seg (db=Seg db_id=seg from=146 to=160)
ACD11_38_17

Not on your lists

comp(31037..31378)
DNA (342bp) protein (114aa)
hypothetical protein
seg (db=Seg db_id=seg from=89 to=106)
transmembrane_regions (db=TMHMM db_id=tmhmm from=88 to=107)
transmembrane_regions (db=TMHMM db_id=tmhmm from=51 to=73)
ACD11_38_18

Not on your lists

comp(31419..32375)
DNA (957bp) protein (319aa)
hypothetical protein
UPF0034 (db=PatternScan db_id=PS01136 from=99 to=117 evalue=0.0 interpro_id=IPR018517 interpro_description=tRNA-dihydrouridine synthase, conserved site GO=Biological Process: tRNA processing (GO:0008033), Molecular Function: tRNA dihydrouridine synthase activity (GO:0017150), Molecular Function: FAD binding (GO:0050660), Biological Process: oxidation reduction (GO:0055114))
TRNA-DIHYDROURIDINE SYNTHASE-RELATED (db=HMMPanther db_id=PTHR11082:SF7 from=42 to=302 evalue=5.8e-96)
TRNA-DIHYDROURIDINE SYNTHASE (db=HMMPanther db_id=PTHR11082 from=42 to=302 evalue=5.8e-96 interpro_id=IPR001269 interpro_description=tRNA-dihydrouridine synthase GO=Biological Process: tRNA processing (GO:0008033), Molecular Function: tRNA dihydrouridine synthase activity (GO:0017150), Molecular Function: FAD binding (GO:0050660), Biological Process: oxidation reduction (GO:0055114))
ACD11_38_19
GWE2_OD1_36_40, Moranbacteria, Parcubacteria, Bacteria

Not on your lists

comp(32523..32753)
DNA (231bp) protein (77aa)
putative tRNA-dihydrouridine synthase
FMN-linked oxidoreductases (db=superfamily db_id=SSF51395 from=15 to=63 evalue=4.8e-07)
Dus (db=HMMPfam db_id=PF01207 from=18 to=57 evalue=1.6e-06 interpro_id=IPR001269 interpro_description=tRNA-dihydrouridine synthase GO=Biological Process: tRNA processing (GO:0008033), Molecular Function: tRNA dihydrouridine synthase activity (GO:0017150), Molecular Function: FAD binding (GO:0050660), Biological Process: oxidation reduction (GO:0055114))
no description (db=Gene3D db_id=G3DSA:3.20.20.70 from=11 to=61 evalue=0.00051 interpro_id=IPR013785 interpro_description=Aldolase-type TIM barrel GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
ACD11_38_20

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comp(32947..33321)
DNA (375bp) protein (125aa)
coiled-coil (db=Coil db_id=coil from=11 to=85 evalue=NA)
Uncharacterized protein {ECO:0000313|EMBL:EKE15904.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD11_38_21

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comp(33456..34640)
DNA (1185bp) protein (395aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
seg (db=Seg db_id=seg from=22 to=32)
seg (db=Seg db_id=seg from=78 to=90)
ACD11_38_22

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comp(34789..34947)
DNA (159bp) protein (53aa)
seg (db=Seg db_id=seg from=31 to=51)
seg (db=Seg db_id=seg from=8 to=25)
Uncharacterized protein {ECO:0000313|EMBL:EKE15906.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD11_38_23

Not on your lists

comp(34965..35855)
DNA (891bp) protein (297aa)
seg (db=Seg db_id=seg from=33 to=102)
seg (db=Seg db_id=seg from=118 to=133)
Uncharacterized protein {ECO:0000313|EMBL:EKE15907.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Displaying 23 items

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