ggKbase home page

RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_630

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_630_1
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

208..459
DNA (252bp) protein (84aa)
Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_630_2
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(511..732)
DNA (222bp) protein (74aa)
Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_630_3
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(745..1068)
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) RepID=C4XSE8_DESMR
hypothetical protein; K02221 YggT family protein Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
hypothetical protein
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_630_4
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(1129..2250)
DNA (1122bp) protein (374aa)
Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_630_5
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(2350..2973)
DNA (624bp) protein (208aa)
Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_630_6
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

3266..4204
DNA (939bp) protein (313aa)
thioredoxin reductase (EC:1.8.1.9); K00384 thioredoxin reductase (NADPH) [EC:1.8.1.9] Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
Thioredoxin-disulfide reductase (EC:1.8.1.9)
Pyridine nucleotide-disulfide oxidoreductase, FAD/NAD(P)-binding domain-containing protein id=1816713 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_630_7
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

4327..6264
DNA (1938bp) protein (646aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA036-E14 RepID=UPI0003677D25
hypothetical protein Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_630_8
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(6331..6711)
DNA (381bp) protein (127aa)
Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_630_9
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

6984..7247
DNA (264bp) protein (88aa)
Transcriptional regulator, ArsR family n=1 Tax=Syntrophobotulus glycolicus (strain DSM 8271 / FlGlyR) RepID=F0T0B3_SYNGF
ArsR family transcriptional regulator Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
ArsR family transcriptional regulator
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_630_10
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

7256..7918
DNA (663bp) protein (221aa)
Uncharacterized protein n=1 Tax=Bacillus cereus HuA2-9 RepID=R8D185_BACCE
hypothetical protein Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
hypothetical protein
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_630_11
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

7932..8717
DNA (786bp) protein (262aa)
tRNA/rRNA methyltransferase SpoU; K03437 RNA methyltransferase, TrmH family Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
Putative uncharacterized protein id=1816794 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
hypothetical protein
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_630_12
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

8857..9138
DNA (282bp) protein (94aa)
Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_630_13
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

9472..9882
DNA (411bp) protein (137aa)
Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_630_14
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists


10062..10325
DNA (264bp) protein (88aa)
rpsT; 30S ribosomal protein S20; K02968 small subunit ribosomal protein S20 Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
30S ribosomal protein S20 id=1981112 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
rpsT; 30S ribosomal protein S20
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_630_15
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(10376..11365)
DNA (990bp) protein (330aa)
DNA polymerase III subunit delta; K02340 DNA polymerase III subunit delta [EC:2.7.7.7] Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
DNA polymerase III subunit delta id=1981113 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
DNA polymerase III subunit delta
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_630_16
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(11458..12762)
DNA (1305bp) protein (435aa)
UDP-N-acetylmuramoylalanine--D-glutamate ligase; K01925 UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
murD; UDP-N-acetylmuramoylalanine-D-glutamate ligase (EC:6.3.2.9)
UDP-N-acetylmuramoylalanine--D-glutamate ligase id=1816908 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_630_17
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

12838..13299
DNA (462bp) protein (154aa)
Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_630_18
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

13320..13688
DNA (369bp) protein (123aa)
Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_630_19
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(13882..16689)
DNA (2808bp) protein (936aa)
DNA polymerase I Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
DNA polymerase I id=1981114 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
DNA polymerase I
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_630_20
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

16934..17200
DNA (267bp) protein (89aa)
Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_630_21
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

17400..18236
DNA (837bp) protein (279aa)
Exonuclease RNase T and DNA polymerase III; K02342 DNA polymerase III subunit epsilon [EC:2.7.7.7] Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
Exonuclease id=1816961 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
exonuclease RNase T and DNA polymerase III
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_630_22
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

18273..19286
DNA (1014bp) protein (338aa)
Holliday junction DNA helicase RuvB; K03551 holliday junction DNA helicase RuvB [EC:3.6.4.12] Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
Holliday junction ATP-dependent DNA helicase RuvB id=1816962 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
Holliday junction DNA helicase RuvB
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_630_23
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

19362..19619
DNA (258bp) protein (86aa)
id=1816963 Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
id=1816963 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_630_24
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

19671..20231
DNA (561bp) protein (187aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA036-E14 RepID=UPI0003760732
hypothetical protein Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
hypothetical protein
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_630_25
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

20243..21295
DNA (1053bp) protein (351aa)
queA; S-adenosylmethionine--tRNA ribosyltransferase-isomerase; K07568 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:5.-.-.-] Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
S-adenosylmethionine:tRNA ribosyltransferase-isomerase id=1816965 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
S-adenosylmethionine/tRNA-ribosyltransferase-isomerase
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_630_26
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(21470..22465)
DNA (996bp) protein (332aa)
hypothetical protein Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
hypothetical protein id=5091414 bin=GWC2_PER_33_13 species=PER_GWC2_33_13 genus=PER_GWC2_33_13 taxon_order=PER_GWC2_33_13 taxon_class=PER_GWC2_33_13 phylum=PER tax=GWC2_PER_33_13 organism_group=PER (Peregrinibacteria) organism_desc=No RuBisCO in this genome
hypothetical protein
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_630_27
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(22534..22917)
DNA (384bp) protein (128aa)
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
Two-component sensor kinase id=1743936 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_630_28
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists


comp(23033..24325)
DNA (1293bp) protein (431aa)
rpfA; 30S ribosomal protein S1 Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
30S ribosomal protein S1 id=1899150 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
RNA binding S1 protein
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_630_29
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

24787..25371
DNA (585bp) protein (195aa)
id=1921062 Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
id=1921062 bin=GWE2_OD1_46_68 species=GWE2_OD1_46_68 genus=GWE2_OD1_46_68 taxon_order=GWE2_OD1_46_68 taxon_class=GWE2_OD1_46_68 phylum=OD1 tax=GWE2_OD1_46_68 organism_group=OD1 (Parcubacteria)
RIFOXYC2_FULL_OD1_34_220_rifoxyc2_full_scaffold_630_30
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

25519..25797
DNA (279bp) protein (93aa)
Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
Displaying 30 items

View Taxonomy