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RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_678

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_678_1
RIFOXYB1_FULL_RIF_OD1_06_37_44_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

120..1583
DNA (1464bp) protein (488aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1YTX7_9BACT
putative excinuclease ABC, C subunit domain protein Tax=RIFOXYB1_FULL_RIF_OD1_06_37_44_curated
excinuclease ABC subunit C
RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_678_2
RIFOXYB1_FULL_RIF_OD1_06_37_44_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

comp(1647..1997)
DNA (351bp) protein (117aa)
Tax=RIFOXYB1_FULL_RIF_OD1_06_37_44_curated
RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_678_3
RIFOXYB1_FULL_RIF_OD1_06_37_44_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

2128..2520
DNA (393bp) protein (131aa)
hypothetical protein; K08972 putative membrane protein Tax=RIFOXYB1_FULL_RIF_OD1_06_37_44_curated
Putative uncharacterized protein id=2670096 bin=GWA1_ZB2_49_26 species=Spirosoma linguale genus=Spirosoma taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
hypothetical protein
RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_678_4
RIFOXYB1_FULL_RIF_OD1_06_37_44_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

2530..2748
DNA (219bp) protein (73aa)
secG; Preprotein translocase, SecG subunit Tax=RIFOXYB1_FULL_RIF_OD1_06_37_44_curated
hypothetical protein cdiviTM7_00165 id=3908850 bin=GWB1_Berkelbacteria_38_5 species=ACD58_39_12 genus=ACD58_39_12 taxon_order=ACD58_39_12 taxon_class=ACD58_39_12 phylum=ACD58 tax=GWB1_Berkelbacteria_38_5 organism_group=ACD58 (Berkelbacteria)
hypothetical protein
RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_678_5
RIFOXYB1_FULL_RIF_OD1_06_37_44_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

2749..4755
DNA (2007bp) protein (669aa)
putative ABC transporter substrate binding protein; K02035 peptide/nickel transport system substrate-binding protein Tax=RIFOXYB1_FULL_RIF_OD1_06_37_44_curated
Extracellular solute-binding protein id=2670106 bin=GWA1_ZB2_49_26 species=ACD63 genus=ACD63 taxon_order=ACD63 taxon_class=ACD63 phylum=OD1 tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
putative ABC transporter substrate binding protein
RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_678_6
RIFOXYB1_FULL_RIF_OD1_06_37_44_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

4746..5330
DNA (585bp) protein (195aa)
glucose-6-phosphate isomerase; K06859 glucose-6-phosphate isomerase, archaeal [EC:5.3.1.9] Tax=RIFOXYB1_FULL_RIF_OD1_06_37_44_curated
Glucose-6-phosphate isomerase n=1 Tax=Archaeoglobus profundus (strain DSM 5631 / JCM 9629 / NBRC 100127 / Av18) RepID=D2RDU3_ARCPA
glucose-6-phosphate isomerase
RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_678_7
RIFOXYB1_FULL_RIF_OD1_06_37_44_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

5432..7114
DNA (1683bp) protein (561aa)
Ribocuclease J; K12574 ribonuclease J [EC:3.1.-.-] Tax=RIFOXYB1_FULL_RIF_OD1_06_37_44_curated
RNA-metabolising metallo-beta-lactamase id=2080734 bin=GWD2_RBX1-related_39_127 species=ACD18 genus=ACD18 taxon_order=ACD18 taxon_class=ACD18 phylum=OD1 tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
Ribocuclease J
RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_678_8
RIFOXYB1_FULL_RIF_OD1_06_37_44_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

7608..8606
DNA (999bp) protein (333aa)
tryptophanyl-tRNA synthetase; K01867 tryptophanyl-tRNA synthetase [EC:6.1.1.2] Tax=RIFOXYB1_FULL_RIF_OD1_06_37_44_curated
trpS; tryptophan--tRNA ligase TrpS (EC:6.1.1.2)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00035FD2BB
RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_678_9
RIFOXYB1_FULL_RIF_OD1_06_37_44_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

comp(8875..10230)
DNA (1356bp) protein (452aa)
phosphomannomutase (EC:5.4.2.8); K01840 phosphomannomutase [EC:5.4.2.8] Tax=RIFOXYB1_FULL_RIF_OD1_06_37_44_curated
phosphomannomutase (EC:5.4.2.8)
hypothetical protein id=5801292 bin=GWE2_OD1_42_8 species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=GWE2_OD1_42_8 organism_group=OD1 (Parcubacteria) organism_desc=GW2011_OD1_1 GW2011_A
RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_678_10
RIFOXYB1_FULL_RIF_OD1_06_37_44_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists


10290..10697
DNA (408bp) protein (136aa)
rpsF; 30S ribosomal protein S6; K02990 small subunit ribosomal protein S6 Tax=RIFOXYB1_FULL_RIF_OD1_06_37_44_curated
30S ribosomal protein S6 id=4790087 bin=GWC2_OD1_43_27 species=Helicobacter bizzozeronii genus=Helicobacter taxon_order=Campylobacterales taxon_class=Epsilonproteobacteria phylum=Proteobacteria tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
rpsF; 30S ribosomal protein S6
RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_678_11
RIFOXYB1_FULL_RIF_OD1_06_37_44_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

10705..11244
DNA (540bp) protein (180aa)
single-strand binding protein; K03111 single-strand DNA-binding protein Tax=RIFOXYB1_FULL_RIF_OD1_06_37_44_curated
Single-stranded DNA-binding protein id=3013257 bin=GWC1_OD1_38_17 species=Eikenella corrodens genus=Eikenella taxon_order=Neisseriales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
single-strand binding protein
RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_678_12
RIFOXYB1_FULL_RIF_OD1_06_37_44_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

comp(11590..11826)
DNA (237bp) protein (79aa)
Endonuclease n=1 Tax=planctomycete KSU-1 RepID=I3IKR2_9PLAN
excinuclease ABC C subunit domain-containing protein; K07461 putative endonuclease Tax=RIFOXYB1_FULL_RIF_OD1_06_37_44_curated
excinuclease ABC C subunit domain-containing protein
RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_678_13
RIFOXYB1_FULL_RIF_OD1_06_37_44_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists


comp(11923..12960)
DNA (1038bp) protein (346aa)
recombinase RecA n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00036C84F8
recA; recombinase A; K03553 recombination protein RecA Tax=RIFOXYB1_FULL_RIF_OD1_06_37_44_curated
recombinase RecA
RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_678_14
RIFOXYB1_FULL_RIF_OD1_06_37_44_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

comp(12991..13263)
DNA (273bp) protein (91aa)
Tax=RIFOXYB1_FULL_RIF_OD1_06_37_44_curated
RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_678_15
RIFOXYB1_FULL_RIF_OD1_06_37_44_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

comp(13279..13956)
DNA (678bp) protein (226aa)
Tax=RIFOXYB1_FULL_RIF_OD1_06_37_44_curated
RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_678_16
RIFOXYB1_FULL_RIF_OD1_06_37_44_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

comp(13983..16259)
DNA (2277bp) protein (759aa)
hypothetical protein, partial n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI000371C9B6
DNA translocase FtsK; K03466 DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family Tax=RIFOXYB1_FULL_RIF_OD1_06_37_44_curated
DNA translocase FtsK
RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_678_17
RIFOXYB1_FULL_RIF_OD1_06_37_44_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

comp(16276..16911)
DNA (636bp) protein (212aa)
Tax=RIFOXYB1_FULL_RIF_OD1_06_37_44_curated
RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_678_18
RIFOXYB1_FULL_RIF_OD1_06_37_44_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

comp(17036..20611)
DNA (3576bp) protein (1192aa)
rpoC; DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6); K03046 DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] Tax=RIFOXYB1_FULL_RIF_OD1_06_37_44_curated
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI0003738BD2
RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_678_19
RIFOXYB1_FULL_RIF_OD1_06_37_44_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

comp(20631..21017)
DNA (387bp) protein (129aa)
HEPN domain protein n=1 Tax=Thermodesulfobacterium geofontis (strain OPB45) RepID=F8C1Y5_THEGP
HEPN domain-containing protein Tax=RIFOXYB1_FULL_RIF_OD1_06_37_44_curated
HEPN domain-containing protein
RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_678_20
RIFOXYB1_FULL_RIF_OD1_06_37_44_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

comp(21022..21408)
DNA (387bp) protein (129aa)
DNA polymerase beta domain-containing protein Tax=RIFOXYB1_FULL_RIF_OD1_06_37_44_curated
DNA polymerase beta domain protein region id=1744080 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
DNA polymerase beta domain-containing protein
RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_678_21
RIFOXYB1_FULL_RIF_OD1_06_37_44_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

comp(21432..21884)
DNA (453bp) protein (151aa)
Tax=RIFOXYB1_FULL_RIF_OD1_06_37_44_curated
RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_678_22
RIFOXYB1_FULL_RIF_OD1_06_37_44_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

comp(22195..25473)
DNA (3279bp) protein (1093aa)
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6); K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] Tax=RIFOXYB1_FULL_RIF_OD1_06_37_44_curated
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00036B10E4
RIFOXYD1_FULL_CPR_37_110_rifoxyd1_full_scaffold_678_23
RIFOXYB1_FULL_RIF_OD1_06_37_44_curated, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

comp(25713..26042)
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2FXZ0_9BACT
Uncharacterized protein Tax=RIFOXYB1_FULL_RIF_OD1_06_37_44_curated
Displaying 23 items

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