ggKbase home page

RIFOXYD12_FULL_OD1_34_57_rifoxyd3_full_scaffold_450

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFOXYD12_FULL_OD1_34_57_rifoxyd3_full_scaffold_450_1
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

210..461
DNA (252bp) protein (84aa)
Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
RIFOXYD12_FULL_OD1_34_57_rifoxyd3_full_scaffold_450_2
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(513..734)
DNA (222bp) protein (74aa)
Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
RIFOXYD12_FULL_OD1_34_57_rifoxyd3_full_scaffold_450_3
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(747..1070)
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) RepID=C4XSE8_DESMR
hypothetical protein; K02221 YggT family protein Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
hypothetical protein
RIFOXYD12_FULL_OD1_34_57_rifoxyd3_full_scaffold_450_4
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(1131..2252)
DNA (1122bp) protein (374aa)
Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
RIFOXYD12_FULL_OD1_34_57_rifoxyd3_full_scaffold_450_5
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(2352..2975)
DNA (624bp) protein (208aa)
Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
RIFOXYD12_FULL_OD1_34_57_rifoxyd3_full_scaffold_450_6
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

3268..4206
DNA (939bp) protein (313aa)
thioredoxin reductase (EC:1.8.1.9); K00384 thioredoxin reductase (NADPH) [EC:1.8.1.9] Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
Thioredoxin-disulfide reductase (EC:1.8.1.9)
Pyridine nucleotide-disulfide oxidoreductase, FAD/NAD(P)-binding domain-containing protein id=1816713 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
RIFOXYD12_FULL_OD1_34_57_rifoxyd3_full_scaffold_450_7
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

4329..6266
DNA (1938bp) protein (646aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA036-E14 RepID=UPI0003677D25
hypothetical protein Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
RIFOXYD12_FULL_OD1_34_57_rifoxyd3_full_scaffold_450_8
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(6333..6713)
DNA (381bp) protein (127aa)
Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
RIFOXYD12_FULL_OD1_34_57_rifoxyd3_full_scaffold_450_9
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

6986..7249
DNA (264bp) protein (88aa)
Transcriptional regulator, ArsR family n=1 Tax=Syntrophobotulus glycolicus (strain DSM 8271 / FlGlyR) RepID=F0T0B3_SYNGF
ArsR family transcriptional regulator Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
ArsR family transcriptional regulator
RIFOXYD12_FULL_OD1_34_57_rifoxyd3_full_scaffold_450_10
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

7258..7920
DNA (663bp) protein (221aa)
Uncharacterized protein n=1 Tax=Bacillus cereus HuA2-9 RepID=R8D185_BACCE
hypothetical protein Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
hypothetical protein
RIFOXYD12_FULL_OD1_34_57_rifoxyd3_full_scaffold_450_11
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

7934..8719
DNA (786bp) protein (262aa)
tRNA/rRNA methyltransferase SpoU; K03437 RNA methyltransferase, TrmH family Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
Putative uncharacterized protein id=1816794 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
hypothetical protein
RIFOXYD12_FULL_OD1_34_57_rifoxyd3_full_scaffold_450_12
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

8859..9140
DNA (282bp) protein (94aa)
Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
RIFOXYD12_FULL_OD1_34_57_rifoxyd3_full_scaffold_450_13
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

9474..9884
DNA (411bp) protein (137aa)
Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
RIFOXYD12_FULL_OD1_34_57_rifoxyd3_full_scaffold_450_14
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists


10064..10327
DNA (264bp) protein (88aa)
rpsT; 30S ribosomal protein S20; K02968 small subunit ribosomal protein S20 Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
30S ribosomal protein S20 id=1981112 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
rpsT; 30S ribosomal protein S20
RIFOXYD12_FULL_OD1_34_57_rifoxyd3_full_scaffold_450_15
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(10378..11367)
DNA (990bp) protein (330aa)
DNA polymerase III subunit delta; K02340 DNA polymerase III subunit delta [EC:2.7.7.7] Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
DNA polymerase III subunit delta id=1981113 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
DNA polymerase III subunit delta
RIFOXYD12_FULL_OD1_34_57_rifoxyd3_full_scaffold_450_16
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(11460..12764)
DNA (1305bp) protein (435aa)
UDP-N-acetylmuramoylalanine--D-glutamate ligase; K01925 UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
murD; UDP-N-acetylmuramoylalanine-D-glutamate ligase (EC:6.3.2.9)
UDP-N-acetylmuramoylalanine--D-glutamate ligase id=1816908 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
RIFOXYD12_FULL_OD1_34_57_rifoxyd3_full_scaffold_450_17
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

12840..13301
DNA (462bp) protein (154aa)
Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
RIFOXYD12_FULL_OD1_34_57_rifoxyd3_full_scaffold_450_18
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

13322..13690
DNA (369bp) protein (123aa)
Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
RIFOXYD12_FULL_OD1_34_57_rifoxyd3_full_scaffold_450_19
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(13884..16691)
DNA (2808bp) protein (936aa)
DNA polymerase I Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
DNA polymerase I id=1981114 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
DNA polymerase I
RIFOXYD12_FULL_OD1_34_57_rifoxyd3_full_scaffold_450_20
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

16936..17202
DNA (267bp) protein (89aa)
Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
RIFOXYD12_FULL_OD1_34_57_rifoxyd3_full_scaffold_450_21
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

17402..18238
DNA (837bp) protein (279aa)
Exonuclease RNase T and DNA polymerase III; K02342 DNA polymerase III subunit epsilon [EC:2.7.7.7] Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
Exonuclease id=1816961 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
exonuclease RNase T and DNA polymerase III
RIFOXYD12_FULL_OD1_34_57_rifoxyd3_full_scaffold_450_22
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

18275..19288
DNA (1014bp) protein (338aa)
Holliday junction DNA helicase RuvB; K03551 holliday junction DNA helicase RuvB [EC:3.6.4.12] Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
Holliday junction ATP-dependent DNA helicase RuvB id=1816962 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
Holliday junction DNA helicase RuvB
RIFOXYD12_FULL_OD1_34_57_rifoxyd3_full_scaffold_450_23
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

19364..19621
DNA (258bp) protein (86aa)
id=1816963 Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
id=1816963 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
RIFOXYD12_FULL_OD1_34_57_rifoxyd3_full_scaffold_450_24
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

19673..20233
DNA (561bp) protein (187aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA036-E14 RepID=UPI0003760732
hypothetical protein Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
hypothetical protein
RIFOXYD12_FULL_OD1_34_57_rifoxyd3_full_scaffold_450_25
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

20245..21297
DNA (1053bp) protein (351aa)
queA; S-adenosylmethionine--tRNA ribosyltransferase-isomerase; K07568 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:5.-.-.-] Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
S-adenosylmethionine:tRNA ribosyltransferase-isomerase id=1816965 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
S-adenosylmethionine/tRNA-ribosyltransferase-isomerase
RIFOXYD12_FULL_OD1_34_57_rifoxyd3_full_scaffold_450_26
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(21472..22467)
DNA (996bp) protein (332aa)
hypothetical protein Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
hypothetical protein id=5091414 bin=GWC2_PER_33_13 species=PER_GWC2_33_13 genus=PER_GWC2_33_13 taxon_order=PER_GWC2_33_13 taxon_class=PER_GWC2_33_13 phylum=PER tax=GWC2_PER_33_13 organism_group=PER (Peregrinibacteria) organism_desc=No RuBisCO in this genome
hypothetical protein
RIFOXYD12_FULL_OD1_34_57_rifoxyd3_full_scaffold_450_27
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(22536..22919)
DNA (384bp) protein (128aa)
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
Two-component sensor kinase id=1743936 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
RIFOXYD12_FULL_OD1_34_57_rifoxyd3_full_scaffold_450_28
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists


comp(23035..24327)
DNA (1293bp) protein (431aa)
rpfA; 30S ribosomal protein S1 Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
30S ribosomal protein S1 id=1899150 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
RNA binding S1 protein
RIFOXYD12_FULL_OD1_34_57_rifoxyd3_full_scaffold_450_29
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

24789..25373
DNA (585bp) protein (195aa)
id=1921062 Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
id=1921062 bin=GWE2_OD1_46_68 species=GWE2_OD1_46_68 genus=GWE2_OD1_46_68 taxon_order=GWE2_OD1_46_68 taxon_class=GWE2_OD1_46_68 phylum=OD1 tax=GWE2_OD1_46_68 organism_group=OD1 (Parcubacteria)
RIFOXYD12_FULL_OD1_34_57_rifoxyd3_full_scaffold_450_30
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

25521..25799
DNA (279bp) protein (93aa)
Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
Displaying 30 items

View Taxonomy