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cg1_0.2_scaffold_2548_c

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cg1_0.2_scaffold_2548_c_trna_6
unknown

Not on your lists

comp(148..221)
DNA (74bp)
transferRNA
cg1_0.2_scaffold_2548_c_1
CG_CPR12_01, CG_CPR12, Bacteria

Not on your lists

comp(348..602)
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1YLV0_9BACT
Uncharacterized protein Tax=CG_CPR12_01
cg1_0.2_scaffold_2548_c_trna_5
unknown

Not on your lists

comp(1010..1083)
DNA (74bp)
transferRNA
cg1_0.2_scaffold_2548_c_trna_4
unknown

Not on your lists

comp(1139..1225)
DNA (87bp)
transferRNA
cg1_0.2_scaffold_2548_c_2
CG_CPR12_01, CG_CPR12, Bacteria

Not on your lists


comp(1235..1735)
DNA (501bp) protein (167aa)
50S ribosomal protein L19; K02884 large subunit ribosomal protein L19 Tax=CG_CPR12_01
50S ribosomal protein L19 id=1817066 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
50S ribosomal protein L19
cg1_0.2_scaffold_2548_c_3
CG_CPR12_01, CG_CPR12, Bacteria

Not on your lists

comp(1880..2458)
DNA (579bp) protein (193aa)
guanylate kinase (EC:2.7.4.8); K00942 guanylate kinase [EC:2.7.4.8] Tax=CG_CPR12_01
guanylate kinase (EC:2.7.4.8)
Guanylate kinase id=1817067 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
cg1_0.2_scaffold_2548_c_4
CG_CPR12_01, CG_CPR12, Bacteria

Not on your lists

comp(2463..3404)
DNA (942bp) protein (314aa)
Ribosomal large subunit pseudouridine synthase D (EC:4.2.1.70) Tax=CG_CPR12_01
pseudouridine synthase (EC:4.2.1.70)
Pseudouridine synthase id=1967757 bin=GWE2_OD1_46_68 species=GWE2_OD1_46_68 genus=GWE2_OD1_46_68 taxon_order=GWE2_OD1_46_68 taxon_class=GWE2_OD1_46_68 phylum=OD1 tax=GWE2_OD1_46_68 organism_group=OD1 (Parcubacteria)
cg1_0.2_scaffold_2548_c_5
CG_CPR12_01, CG_CPR12, Bacteria

Not on your lists

comp(3414..4760)
DNA (1347bp) protein (449aa)
pcnB; tRNA nucleotidyltransferase/poly(A) polymerase; K00970 poly(A) polymerase [EC:2.7.7.19] id=5802470 bin=PER_GWA2_38_35 species=PERA2_38_36 genus=PERA2_38_36 taxon_order=PERA2_38_36 taxon_class=PERA2_38_36 phylum=PER tax=PER_GWA2_38_35 organism_group=PER (Peregrinibacteria) organism_desc=This is the curated version (7 contigs can be represented as 5 scaffolds)
polynucleotide adenylyltransferase/metal dependent phosphohydrolase Tax=CG_CPR12_01
polynucleotide adenylyltransferase/metal dependent phosphohydrolase
cg1_0.2_scaffold_2548_c_trna_3
unknown

Not on your lists

comp(5127..5200)
DNA (74bp)
transferRNA
cg1_0.2_scaffold_2548_c_6
CG_CPR12_01, CG_CPR12, Bacteria

Not on your lists

comp(5305..5649)
DNA (345bp) protein (115aa)
D-alanine--D-alanine ligase (EC:6.3.2.4) Tax=CG_CPR12_01
D-alanine--D-alanine ligase (EC:6.3.2.4)
D-alanine--D-alanine ligase id=3013068 bin=GWC1_OD1_38_17 species=ACD13 genus=ACD13 taxon_order=ACD13 taxon_class=ACD13 phylum=OP11 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
cg1_0.2_scaffold_2548_c_7

Not on your lists

comp(5606..5839)
DNA (234bp) protein (78aa)
D-alanine--D-alanine ligase (EC:6.3.2.4)
Uncharacterized protein (Fragment) n=1 Tax=uncultured bacterium RepID=K1YE47_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD35586.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
cg1_0.2_scaffold_2548_c_8
CG_CPR12_01, CG_CPR12, Bacteria

Not on your lists

comp(5864..6211)
DNA (348bp) protein (116aa)
D-alanine--D-alanine ligase (EC:6.3.2.4); K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] Tax=CG_CPR12_01
D-alanine--D-alanine ligase (EC:6.3.2.4)
Uncharacterized protein n=1 Tax=uncultured bacterium (gcode 4) RepID=K1XX22_9BACT
cg1_0.2_scaffold_2548_c_trna_2
unknown

Not on your lists

comp(6350..6423)
DNA (74bp)
transferRNA
cg1_0.2_scaffold_2548_c_9
CG_CPR12_01, CG_CPR12, Bacteria

Not on your lists

comp(6698..7849)
DNA (1152bp) protein (384aa)
phosphoesterase domain-containing protein; K06881 phosphoesterase RecJ domain-containing protein Tax=CG_CPR12_01
MgpA protein id=1816992 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
phosphoesterase RecJ domain protein
cg1_0.2_scaffold_2548_c_10
CG_CPR12_01, CG_CPR12, Bacteria

Not on your lists


8004..10637
DNA (2634bp) protein (878aa)
valyl-tRNA synthetase; K01873 valyl-tRNA synthetase [EC:6.1.1.9] Tax=CG_CPR12_01
toc:Toce_0684 valyl-tRNA synthetase (EC:6.1.1.9); K01873 valyl-tRNA synthetase [EC:6.1.1.9] id=16440 bin=ACD1 species=ACD1 genus=ACD1 taxon_order=ACD1 taxon_class=ACD1 phylum=OD1-i tax=ACD1 organism_group=OD1-i organism_desc=OD1-i
valyl-tRNA synthetase
cg1_0.2_scaffold_2548_c_11
CG_CPR12_01, CG_CPR12, Bacteria

Not on your lists

10743..11936
DNA (1194bp) protein (398aa)
tyrosyl-tRNA synthetase; K01866 tyrosyl-tRNA synthetase [EC:6.1.1.1] Tax=CG_CPR12_01
tyrS; tyrosyl-tRNA synthetase (EC:6.1.1.1)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1Z9N7_9BACT
cg1_0.2_scaffold_2548_c_12
CG_CPR12_01, CG_CPR12, Bacteria

Not on your lists

12000..13040
DNA (1041bp) protein (347aa)
Uncharacterized protein (Fragment) n=1 Tax=uncultured bacterium RepID=K2E2J6_9BACT
hypothetical protein Tax=CG_CPR12_01
hypothetical protein
cg1_0.2_scaffold_2548_c_13
unknown

Not on your lists

13256..13369
DNA (114bp) protein (38aa)

This feature has no annotations

cg1_0.2_scaffold_2548_c_14
CG_CPR12_01, CG_CPR12, Bacteria

Not on your lists

13454..14800
DNA (1347bp) protein (449aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA036-E14 RepID=UPI00036C03F9
excinuclease ABC subunit C; K03703 excinuclease ABC subunit C Tax=CG_CPR12_01
excinuclease ABC subunit C
cg1_0.2_scaffold_2548_c_15
CG_CPR12_01, CG_CPR12, Bacteria

Not on your lists

15228..15404
DNA (177bp) protein (59aa)
Tax=CG_CPR12_01
cg1_0.2_scaffold_2548_c_16
CG_CPR12_01, CG_CPR12, Bacteria

Not on your lists

comp(15410..17287)
DNA (1878bp) protein (626aa)
excinuclease ABC subunit B; K03702 excinuclease ABC subunit B Tax=CG_CPR12_01
UvrABC system protein B id=1797429 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
excinuclease ABC subunit B
cg1_0.2_scaffold_2548_c_17
CG_CPR12_01, CG_CPR12, Bacteria

Not on your lists

17433..18140
DNA (708bp) protein (236aa)
acyltransferase Tax=CG_CPR12_01
[acyl-]glycerolphosphate acyltransferase
cg1_0.2_scaffold_2548_c_trna_1
unknown

Not on your lists

18435..18521
DNA (87bp)
transferRNA
cg1_0.2_scaffold_2548_c_18
R_RIF_OD1_10_39_19, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists

18660..20138
DNA (1479bp) protein (493aa)
recombinase Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_10_39_19_curated
Recombinase id=4948379 bin=GWA2_Elusimicrobia_56_46 species=Hippea maritima genus=Hippea taxon_order=Desulfurellales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Elusimicrobia_56_46 organism_group=Elusimicrobia organism_desc=Good
recombinase
Displaying 24 items

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