ggKbase home page

Ig3397_v2_scaffold_238

Search features with annotation key words

Displaying items 1-30 of 123 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
Ig3397_v2_scaffold_238_1
BJP_IG2103_TM7_39_1400, Candidatus Saccharibacteria, Bacteria

Not on your lists

comp(25..963)
DNA (939bp) protein (313aa)
TIR protein id=3642759 bin=GWF2_Bacteroidetes_41_31 species=Prosthecochloris aestuarii genus=Prosthecochloris taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=GWF2_Bacteroidetes_41_31 organism_group=Bacteroidetes
lipoprotein precursor
Tax=BJP_IG2103_TM7_39_1400
Ig3397_v2_scaffold_238_2
BJP_IG2103_TM7_39_1400, Candidatus Saccharibacteria, Bacteria

Not on your lists

comp(1051..2724)
DNA (1674bp) protein (558aa)
Tax=BJP_IG2103_TM7_39_1400
Ig3397_v2_scaffold_238_3
BJP_IG2103_TM7_39_1400, Candidatus Saccharibacteria, Bacteria

Not on your lists

3516..4085
DNA (570bp) protein (190aa)
RNA polymerase, sigma-24 subunit, ECF subfamily id=2193117 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
ECF subfamily RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
Tax=BJP_IG2103_TM7_39_1400
Ig3397_v2_scaffold_238_4
BJP_IG2103_TM7_39_1400, Candidatus Saccharibacteria, Bacteria

Not on your lists

4078..4527
DNA (450bp) protein (150aa)
Tax=BJP_IG2103_TM7_39_1400
Ig3397_v2_scaffold_238_5
BJP_IG2103_TM7_39_1400, Candidatus Saccharibacteria, Bacteria

Not on your lists

4579..4986
DNA (408bp) protein (136aa)
Tax=BJP_IG2103_TM7_39_1400
Ig3397_v2_scaffold_238_6
BJP_IG2103_TM7_39_1400, Candidatus Saccharibacteria, Bacteria

Not on your lists

comp(5085..5795)
DNA (711bp) protein (237aa)
Putative NUDIX hydrolase n=1 Tax=Candidatus Saccharimonas aalborgensis RepID=R4PUV6_9BACT
putative NUDIX hydrolase
Tax=BJP_IG2103_TM7_39_1400
Ig3397_v2_scaffold_238_7
BJP_IG2103_TM7_39_1400, Candidatus Saccharibacteria, Bacteria

Not on your lists

6101..8236
DNA (2136bp) protein (712aa)
Chaperone protein clpB n=1 Tax=sediment metagenome RepID=D9PLA8_9ZZZZ rbh
chaperone ClpB ; K03695 ATP-dependent Clp protease ATP-binding subunit ClpB
Tax=BJP_IG2103_TM7_39_1400
Ig3397_v2_scaffold_238_8
BJP_IG2103_TM7_39_1400, Candidatus Saccharibacteria, Bacteria

Not on your lists

8351..8773
DNA (423bp) protein (141aa)
Heat shock protein Hsp20 family protein id=2445134 bin=GWC2_TM7_44_17 species=Corynebacterium glucuronolyticum genus=Corynebacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_TM7_44_17 organism_group=TM7 organism_desc=Genome has competed version
HSP20 family protein; K13993 HSP20 family protein
Tax=BJP_IG2103_TM7_39_1400
Ig3397_v2_scaffold_238_9
BJP_IG2103_TM7_39_1400, Candidatus Saccharibacteria, Bacteria

Not on your lists

8831..9094
DNA (264bp) protein (88aa)
Tax=BJP_IG2103_TM7_39_1400
Ig3397_v2_scaffold_238_10
BJP_IG2103_TM7_39_1400, Candidatus Saccharibacteria, Bacteria

Not on your lists

9331..9969
DNA (639bp) protein (213aa)
DNA repair protein RadC n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B261F
radC; DNA repair protein RadC; K03630 DNA repair protein RadC
Tax=BJP_IG2103_TM7_39_1400
Ig3397_v2_scaffold_238_11
BJP_IG2103_TM7_39_1400, Candidatus Saccharibacteria, Bacteria

Not on your lists

10020..10916
DNA (897bp) protein (299aa)
Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PXV3_9BACT id=3041 bin=ACD11 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=ACD11 organism_group=OD1-i organism_desc=OD1-i
Fic family protein
Tax=BJP_IG2103_TM7_39_1400
Ig3397_v2_scaffold_238_12
BJP_IG2103_TM7_39_1400, Candidatus Saccharibacteria, Bacteria

Not on your lists

10929..13544
DNA (2616bp) protein (872aa)
type iii restriction protein res subunit; K01153 type I restriction enzyme, R subunit [EC:3.1.21.3] id=15191399 bin=GWC1_OP11_49_16_COMPLETE species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC1_OP11_49_16_COMPLETE organism_group=OP11 (Microgenomates)
type iii restriction protein res subunit; K01153 type I restriction enzyme, R subunit [EC:3.1.21.3]
Tax=BJP_IG2103_TM7_39_1400
Ig3397_v2_scaffold_238_13
BJP_IG2103_TM7_39_1400, Candidatus Saccharibacteria, Bacteria

Not on your lists

13553..16015
DNA (2463bp) protein (821aa)
Restriction modification system DNA specificity domain n=1 Tax=Calditerrivibrio nitroreducens (strain DSM 19672 / NBRC 101217 / Yu37-1) RepID=E4TK37_CALNY
restriction modification system DNA specificity domain
Tax=BJP_IG2103_TM7_39_1400
Ig3397_v2_scaffold_238_14
BJP_IG2103_TM7_39_1400, Candidatus Saccharibacteria, Bacteria

Not on your lists

comp(16020..16253)
DNA (234bp) protein (78aa)
Tax=BJP_IG2103_TM7_39_1400
Ig3397_v2_scaffold_238_15
BJP_IG2103_TM7_39_1400, Candidatus Saccharibacteria, Bacteria

Not on your lists

comp(16255..16533)
DNA (279bp) protein (93aa)
Tax=BJP_IG2103_TM7_39_1400
Ig3397_v2_scaffold_238_16
BJP_IG2103_TM7_39_1400, Candidatus Saccharibacteria, Bacteria

Not on your lists

16797..17486
DNA (690bp) protein (230aa)
helix-TurN-helix domain protein id=12863 bin=ACD18 species=ACD18 genus=ACD18 taxon_order=ACD18 taxon_class=ACD18 phylum=OD1 tax=ACD18 organism_group=OD1 (Parcubacteria) organism_desc= OD1
helix-turN-helix domain protein
Tax=BJP_IG2103_TM7_39_1400
Ig3397_v2_scaffold_238_17
BJP_IG2103_TM7_39_1400, Candidatus Saccharibacteria, Bacteria

Not on your lists

17464..17886
DNA (423bp) protein (141aa)
id=5802432 bin=PER_GWA2_38_35 species=PERA2_38_36 genus=PERA2_38_36 taxon_order=PERA2_38_36 taxon_class=PERA2_38_36 phylum=PER tax=PER_GWA2_38_35 organism_group=PER (Peregrinibacteria) organism_desc=This is the curated version (7 contigs can be represented as 5 scaffolds)
Tax=BJP_IG2103_TM7_39_1400
Ig3397_v2_scaffold_238_18
BJP_IG2103_TM7_39_1400, Candidatus Saccharibacteria, Bacteria

Not on your lists

17888..19144
DNA (1257bp) protein (419aa)
hypothetical protein n=1 Tax=Flavobacterium sp. ACAM 123 RepID=UPI0002EFF3B3 rbh
hypothetical protein rbh
Tax=BJP_IG2103_TM7_39_1400
Ig3397_v2_scaffold_238_19
BJP_IG2103_TM7_39_1400, Candidatus Saccharibacteria, Bacteria

Not on your lists

comp(19274..19618)
DNA (345bp) protein (115aa)
Tax=BJP_IG2103_TM7_39_1400
Ig3397_v2_scaffold_238_20
BJP_IG2103_TM7_39_1400, Candidatus Saccharibacteria, Bacteria

Not on your lists

19741..21741
DNA (2001bp) protein (667aa)
Uncharacterized protein n=1 Tax=Methanosaeta concilii (strain ATCC 5969 / DSM 3671 / JCM 10134 / NBRC 103675 / OCM 69 / GP-6) RepID=F4BYJ7_METCG
lipoprotein
Tax=BJP_IG2103_TM7_39_1400
Ig3397_v2_scaffold_238_21
BJP_IG2103_TM7_39_1400, Candidatus Saccharibacteria, Bacteria

Not on your lists

21801..22076
DNA (276bp) protein (92aa)
Tax=BJP_IG2103_TM7_39_1400
Ig3397_v2_scaffold_238_22
BJP_IG2103_TM7_39_1400, Candidatus Saccharibacteria, Bacteria

Not on your lists

22091..23722
DNA (1632bp) protein (544aa)
Putative uncharacterized protein n=1 Tax=uncultured archaeon GZfos37B2 RepID=Q648S9_9ARCH rbh
lipoprotein
Tax=BJP_IG2103_TM7_39_1400
Ig3397_v2_scaffold_238_23
BJP_IG2103_TM7_39_1400, Candidatus Saccharibacteria, Bacteria

Not on your lists

comp(23813..23968)
DNA (156bp) protein (52aa)
Uncharacterized Fe-S center protein, putative ferredoxin n=1 Tax=Treponema brennaborense (strain DSM 12168 / CIP 105900 / DD5/3) RepID=F4LLB3_TREBD
Fe-S protein; K07138
Tax=BJP_IG2103_TM7_39_1400
Ig3397_v2_scaffold_238_24
BJP_IG2103_TM7_39_1400, Candidatus Saccharibacteria, Bacteria

Not on your lists

comp(23998..24501)
DNA (504bp) protein (168aa)
Tax=BJP_IG2103_TM7_39_1400
Ig3397_v2_scaffold_238_25
BJP_IG2103_TM7_39_1400, Candidatus Saccharibacteria, Bacteria

Not on your lists

comp(24591..24845)
DNA (255bp) protein (85aa)
Glutaredoxin-like protein, YruB family n=1 Tax=Candidatus Saccharibacteria bacterium RAAC3_TM7_1 RepID=V5RUG5_9BACT
glutaredoxin-like protein, YruB-family
Tax=BJP_IG2103_TM7_39_1400
Ig3397_v2_scaffold_238_26
BJP_IG2103_TM7_39_1400, Candidatus Saccharibacteria, Bacteria

Not on your lists

comp(24874..25350)
DNA (477bp) protein (159aa)
Tax=BJP_IG2103_TM7_39_1400
Ig3397_v2_scaffold_238_27
BJP_IG2103_TM7_39_1400, Candidatus Saccharibacteria, Bacteria

Not on your lists

comp(25468..26118)
DNA (651bp) protein (217aa)
Nitrogen-responsive regulatory protein n=1 Tax=uncultured bacterium RepID=K2CZF3_9BACT
cAMP-binding protein
Tax=BJP_IG2103_TM7_39_1400
Ig3397_v2_scaffold_238_28
BJP_IG2103_TM7_39_1400, Candidatus Saccharibacteria, Bacteria

Not on your lists

26238..26861
DNA (624bp) protein (208aa)
Tax=BJP_IG2103_TM7_39_1400
Ig3397_v2_scaffold_238_29
BJP_IG2103_TM7_39_1400, Candidatus Saccharibacteria, Bacteria

Not on your lists

26861..27151
DNA (291bp) protein (97aa)
Tax=BJP_IG2103_TM7_39_1400
Ig3397_v2_scaffold_238_30
BJP_IG2103_TM7_39_1400, Candidatus Saccharibacteria, Bacteria

Not on your lists

comp(27330..29768)
DNA (2439bp) protein (813aa)
Integral membrane protein with ~26 transmembrane domains
Putative integral membrane protein id=4854808 bin=GWC2_TM7_48_9 species=Arthrobacter sp. SJCon genus=Arthrobacter taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_TM7_48_9 organism_group=TM7 organism_desc=Good
integral membrane protein
Tax=BJP_IG2103_TM7_39_1400
Displaying items 1-30 of 123 in total

View Taxonomy