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RifSed_csp2_19ft_3_scaffold_34473

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RifSed_csp2_19ft_3_scaffold_34473_1
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

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2..298
DNA (297bp) protein (99aa)
PilT domain-containing protein id=75307 bin=ACD52 species=ACD52 genus=ACD52 taxon_order=ACD52 taxon_class=ACD52 phylum=OP11 tax=ACD52 organism_group=OP11 (Microgenomates) organism_desc=OP11
Tax=RBG_16_RIF_OP11_02_41_13_curated
RifSed_csp2_19ft_3_scaffold_34473_2
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

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comp(301..765)
DNA (465bp) protein (155aa)
seg 43..57 id=75304 bin=ACD52 species=ACD52 genus=ACD52 taxon_order=ACD52 taxon_class=ACD52 phylum=OP11 tax=ACD52 organism_group=OP11 (Microgenomates) organism_desc=OP11 rbh
Tax=RBG_16_RIF_OP11_02_41_13_curated
RifSed_csp2_19ft_3_scaffold_34473_3
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

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830..1972
DNA (1143bp) protein (381aa)
FtsK/SpoIIIE family DNA translocase n=1 Tax=Lactobacillus vaginalis ATCC 49540 RepID=C2ERU5_9LACO id=75309 bin=ACD52 species=Lactobacillus vaginalis genus=Lactobacillus taxon_order=Lactobacillales taxon_class=Bacilli phylum=Firmicutes tax=ACD52 organism_group=OP11 (Microgenomates) organism_desc=OP11 rbh
DNA translocase FtsK
Tax=RBG_16_RIF_OP11_02_41_13_curated
RifSed_csp2_19ft_3_scaffold_34473_4
GWC1_OP11_44_33_partial, Curtissbacteria, Microgenomates, Bacteria

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1941..3386
DNA (1446bp) protein (482aa)
Ftsk/spoiiie family protein {ECO:0000313|EMBL:KKT66139.1}; TaxID=1618413 species="Bacteria; Microgenomates.;" source="Microgenomates (Curtissbacteria) bacterium GW2011_GWC1_44_33.;"
toc:Toce_1223 DNA translocase FtsK; K03466 DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family id=75310 bin=ACD52 species=ACD52 genus=ACD52 taxon_order=ACD52 taxon_class=ACD52 phylum=OP11 tax=ACD52 organism_group=OP11 (Microgenomates) organism_desc=OP11
DNA translocase FtsK
RifSed_csp2_19ft_3_scaffold_34473_5
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

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3386..3631
DNA (246bp) protein (82aa)
transmembrane_regions 7..29 id=85565 bin=ACD57 species=ACD57 genus=ACD57 taxon_order=ACD57 taxon_class=ACD57 phylum=OP11 tax=ACD57 organism_group=OP11 (Microgenomates) organism_desc=OP11
Tax=RBG_16_RIF_OP11_02_41_13_curated
RifSed_csp2_19ft_3_scaffold_34473_6
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

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comp(3711..4082)
DNA (372bp) protein (124aa)
seg 17..34 id=85568 bin=ACD57 species=ACD57 genus=ACD57 taxon_order=ACD57 taxon_class=ACD57 phylum=OP11 tax=ACD57 organism_group=OP11 (Microgenomates) organism_desc=OP11
putative nucleic-acid-binding protein, contains PIN domain
Tax=RBG_16_RIF_OP11_02_41_13_curated
RifSed_csp2_19ft_3_scaffold_34473_7
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists


4345..4917
DNA (573bp) protein (191aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2E431_9BACT
alanyl-tRNA synthetase
Tax=RBG_16_RIF_OP11_02_41_13_curated
RifSed_csp2_19ft_3_scaffold_34473_8
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

4884..5405
DNA (522bp) protein (174aa)
tde:TDE1659 alaS; alanyl-tRNA synthetase (EC:6.1.1.7); K01872 alanyl-tRNA synthetase [EC:6.1.1.7] id=4783 bin=ACD12 species=ACD12 genus=ACD12 taxon_order=ACD12 taxon_class=ACD12 phylum=OP11 tax=ACD12 organism_group=OP11 (Microgenomates) organism_desc= OP11
Suspect SCG annotation. See neighboring gene [RifSed_csp2_19ft_3_scaffold_34473_7].
alanyl-tRNA synthetase
Tax=RBG_16_RIF_OP11_02_41_13_curated
RifSed_csp2_19ft_3_scaffold_34473_9
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

5455..5928
DNA (474bp) protein (158aa)
Uncharacterized protein (Fragment) n=1 Tax=uncultured bacterium RepID=K2B600_9BACT
Suspect SCG annotation. See neighboring gene [RifSed_csp2_19ft_3_scaffold_34473_8].
Alanine-tRNA ligase
Tax=RBG_16_RIF_OP11_02_41_13_curated
RifSed_csp2_19ft_3_scaffold_34473_10
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

5938..8073
DNA (2136bp) protein (712aa)
hypothetical protein id=85081 bin=ACD57 species=ACD57 genus=ACD57 taxon_order=ACD57 taxon_class=ACD57 phylum=OP11 tax=ACD57 organism_group=OP11 (Microgenomates) organism_desc=OP11
Tax=RBG_16_RIF_OP11_02_41_13_curated
RifSed_csp2_19ft_3_scaffold_34473_11

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8076..8747
DNA (672bp) protein (224aa)
sortase family protein; K07284 sortase A id=75364 bin=ACD52 species=ACD52 genus=ACD52 taxon_order=ACD52 taxon_class=ACD52 phylum=OP11 tax=ACD52 organism_group=OP11 (Microgenomates) organism_desc=OP11 rbh
Uncharacterized protein {ECO:0000313|EMBL:EKD62602.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
RifSed_csp2_19ft_3_scaffold_34473_12
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

8744..8941
DNA (198bp) protein (66aa)
Holliday junction resolvase YqgF; K07447 putative holliday junction resolvase [EC:3.1.-.-] id=75367 bin=ACD52 species=ACD52 genus=ACD52 taxon_order=ACD52 taxon_class=ACD52 phylum=OP11 tax=ACD52 organism_group=OP11 (Microgenomates) organism_desc=OP11
Tax=RBG_16_RIF_OP11_02_41_13_curated
RifSed_csp2_19ft_3_scaffold_34473_13

Not on your lists

9219..9977
DNA (759bp) protein (253aa)
hypothetical protein; K07082 id=75363 bin=ACD52 species=ACD52 genus=ACD52 taxon_order=ACD52 taxon_class=ACD52 phylum=OP11 tax=ACD52 organism_group=OP11 (Microgenomates) organism_desc=OP11 rbh
Uncharacterized protein {ECO:0000313|EMBL:EKD62599.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
RifSed_csp2_19ft_3_scaffold_34473_14

Not on your lists

10210..12189
DNA (1980bp) protein (660aa)
DNA-directed RNA polymerase {ECO:0000256|RuleBase:RU000431}; EC=2.7.7.6 {ECO:0000256|RuleBase:RU000431};; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
adg:Adeg_1532 DNA-directed RNA polymerase, beta subunit (EC:2.7.7.6); K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] id=75366 bin=ACD52 species=ACD52 genus=ACD52 taxon_order=ACD52 taxon_class=ACD52 phylum=OP11 tax=ACD52 organism_group=OP11 (Microgenomates) organism_desc=OP11
DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
Displaying 14 items

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