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RifSed_csp2_16ft_2_scaffold_14419

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RifSed_csp2_16ft_2_scaffold_14419_1
R_RIF_OP11_03_49_14, RIF-OP11-3, Microgenomates, Bacteria

Not on your lists

comp(125..1273)
DNA (1149bp) protein (383aa)
DNA polymerase III subunit beta (EC:2.7.7.7); K02338 DNA polymerase III subunit beta [EC:2.7.7.7] id=15190849 bin=GWC1_OP11_49_16_COMPLETE species=unknown genus=unknown taxon_order=unknown taxon_class=Dehalococcoidia phylum=Chloroflexi tax=GWC1_OP11_49_16_COMPLETE organism_group=OP11 (Microgenomates) rbh
DNA polymerase III subunit beta (EC:2.7.7.7)
Tax=RIFCSPLOWO2_01_FULL_RIF_OP11_03_49_14_curated
RifSed_csp2_16ft_2_scaffold_14419_2
R_RIF_OP11_03_49_14, RIF-OP11-3, Microgenomates, Bacteria

Not on your lists

comp(1516..2934)
DNA (1419bp) protein (473aa)
chromosomal replication initiator protein DnaA; K02313 chromosomal replication initiator protein id=120581 bin=ACD76 species=ACD76 genus=ACD76 taxon_order=ACD76 taxon_class=ACD76 phylum=OD1 tax=ACD76 organism_group=OD1 (Parcubacteria) organism_desc=OD1 rbh
dnaA; chromosomal replication initiator protein DnaA
Tax=RIFCSPLOWO2_01_FULL_RIF_OP11_03_49_14_curated
RifSed_csp2_16ft_2_scaffold_14419_3
R_RIF_OP11_03_49_14, RIF-OP11-3, Microgenomates, Bacteria

Not on your lists

3305..3655
DNA (351bp) protein (117aa)
ribonuclease P protein component (EC:3.1.26.5)
Ribonuclease P protein component n=1 Tax=Pseudanabaena sp. PCC 6903 RepID=RNPA_PSEAO id=120582 bin=ACD76 species=Pseudanabaena sp. PCC 6903 genus=Pseudanabaena taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=ACD76 organism_group=OD1 (Parcubacteria) organism_desc=OD1
Tax=RIFCSPLOWO2_01_FULL_RIF_OP11_03_49_14_curated
RifSed_csp2_16ft_2_scaffold_14419_4
R_RIF_OP11_03_49_14, RIF-OP11-3, Microgenomates, Bacteria

Not on your lists

3661..3927
DNA (267bp) protein (89aa)
Putative membrane protein insertion efficiency factor n=1 Tax=uncultured bacterium RepID=K2FT87_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_01_FULL_RIF_OP11_03_49_14_curated
RifSed_csp2_16ft_2_scaffold_14419_5
R_RIF_OP11_03_49_14, RIF-OP11-3, Microgenomates, Bacteria

Not on your lists

3987..4688
DNA (702bp) protein (234aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2AB12_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_01_FULL_RIF_OP11_03_49_14_curated
RifSed_csp2_16ft_2_scaffold_14419_6
R_RIF_OP11_03_49_14, RIF-OP11-3, Microgenomates, Bacteria

Not on your lists

4655..5164
DNA (510bp) protein (170aa)
single-stranded nucleic acid binding R3H domain-containing protein; K06346 spoIIIJ-associated protein id=15190842 bin=GWC1_OP11_49_16_COMPLETE species=RAAC19 genus=RAAC19 taxon_order=RAAC19 taxon_class=RAAC19 phylum=OP11 tax=GWC1_OP11_49_16_COMPLETE organism_group=OP11 (Microgenomates)
single-stranded nucleic acid binding R3H domain-containing protein
Tax=RIFCSPLOWO2_01_FULL_RIF_OP11_03_49_14_curated
RifSed_csp2_16ft_2_scaffold_14419_7
R_RIF_OP11_03_49_14, RIF-OP11-3, Microgenomates, Bacteria

Not on your lists

5161..6414
DNA (1254bp) protein (418aa)
seg 3..19 id=7100 bin=ACD13 species=ACD13 genus=ACD13 taxon_order=ACD13 taxon_class=ACD13 phylum=OP11 tax=ACD13 organism_group=OP11 (Microgenomates) organism_desc=OP11
O-antigen ligase-related protein
Tax=RIFCSPLOWO2_01_FULL_RIF_OP11_03_49_14_curated
RifSed_csp2_16ft_2_scaffold_14419_8
R_RIF_OP11_03_49_14, RIF-OP11-3, Microgenomates, Bacteria

Not on your lists

6442..7704
DNA (1263bp) protein (421aa)
polysaccharide biosynthesis protein id=88888 bin=ACD5 species=ACD5 genus=ACD5 taxon_order=ACD5 taxon_class=ACD5 phylum=OD1 tax=ACD5 organism_group=OD1-i organism_desc=OD1-i rbh
Membrane protein involved in the export of O-antigen and teichoic acid
Tax=RIFCSPLOWO2_01_FULL_RIF_OP11_03_49_14_curated
RifSed_csp2_16ft_2_scaffold_14419_9

Not on your lists

7679..8191
DNA (513bp) protein (171aa)
ribonuclease H id=88887 bin=ACD5 species=ACD5 genus=ACD5 taxon_order=ACD5 taxon_class=ACD5 phylum=OD1 tax=ACD5 organism_group=OD1-i organism_desc=OD1-i rbh
Ribonuclease H {ECO:0000313|EMBL:EKE25320.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ribonuclease H
RifSed_csp2_16ft_2_scaffold_14419_10
R_RIF_OP11_03_49_14, RIF-OP11-3, Microgenomates, Bacteria

Not on your lists

8590..11571
DNA (2982bp) protein (994aa)
nucleoside-diphosphate-sugar epimerase id=15190840 bin=GWC1_OP11_49_16_COMPLETE species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC1_OP11_49_16_COMPLETE organism_group=OP11 (Microgenomates)
GDP-mannose 4,6 dehydratase ISS
Tax=RIFCSPLOWO2_01_FULL_RIF_OP11_03_49_14_curated
RifSed_csp2_16ft_2_scaffold_14419_11
R_RIF_OP11_03_49_14, RIF-OP11-3, Microgenomates, Bacteria

Not on your lists


11648..12343
DNA (696bp) protein (232aa)
ctc; 50S ribosomal protein L25; K02897 large subunit ribosomal protein L25 id=15190839 bin=GWC1_OP11_49_16_COMPLETE species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC1_OP11_49_16_COMPLETE organism_group=OP11 (Microgenomates)
50S ribosomal protein L25
Tax=RIFCSPLOWO2_01_FULL_RIF_OP11_03_49_14_curated
RifSed_csp2_16ft_2_scaffold_14419_12
R_RIF_OP11_03_49_14, RIF-OP11-3, Microgenomates, Bacteria

Not on your lists

comp(12357..12899)
DNA (543bp) protein (181aa)
Tax=RIFCSPLOWO2_01_FULL_RIF_OP11_03_49_14_curated
RifSed_csp2_16ft_2_scaffold_14419_13
R_RIF_OP11_03_49_14, RIF-OP11-3, Microgenomates, Bacteria

Not on your lists

13086..13589
DNA (504bp) protein (168aa)
Tax=RIFCSPLOWO2_01_FULL_RIF_OP11_03_49_14_curated
RifSed_csp2_16ft_2_scaffold_14419_14
R_RIF_OP11_03_49_14, RIF-OP11-3, Microgenomates, Bacteria

Not on your lists


comp(13649..14926)
DNA (1278bp) protein (426aa)
valS; valyl-tRNA synthetase (EC:6.1.1.9); K01873 valyl-tRNA synthetase [EC:6.1.1.9] id=15190837 bin=GWC1_OP11_49_16_COMPLETE species=OP11_3 genus=OP11_3 taxon_order=OP11_3 taxon_class=OP11_3 phylum=OP11 tax=GWC1_OP11_49_16_COMPLETE organism_group=OP11 (Microgenomates)
hypothetical protein
Tax=RIFCSPLOWO2_01_FULL_RIF_OP11_03_49_14_curated
RifSed_csp2_16ft_2_scaffold_14419_15
R_RIF_OP11_03_49_14, RIF-OP11-3, Microgenomates, Bacteria

Not on your lists


comp(14931..15935)
DNA (1005bp) protein (335aa)
valS; valyl-tRNA synthetase (EC:6.1.1.9); K01873 valyl-tRNA synthetase [EC:6.1.1.9] id=15190837 bin=GWC1_OP11_49_16_COMPLETE species=OP11_3 genus=OP11_3 taxon_order=OP11_3 taxon_class=OP11_3 phylum=OP11 tax=GWC1_OP11_49_16_COMPLETE organism_group=OP11 (Microgenomates)
Suspect SCG annotation. See neighboring gene [RifSed_csp2_16ft_2_scaffold_14419_14].
hypothetical protein
Tax=RIFCSPLOWO2_01_FULL_RIF_OP11_03_49_14_curated
RifSed_csp2_16ft_2_scaffold_14419_16
R_RIF_OP11_03_49_14, RIF-OP11-3, Microgenomates, Bacteria

Not on your lists


comp(15997..18927)
DNA (2931bp) protein (977aa)
hypothetical protein id=15190828 bin=GWC1_OP11_49_16_COMPLETE species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC1_OP11_49_16_COMPLETE organism_group=OP11 (Microgenomates) rbh
VanW family protein
Tax=RIFCSPLOWO2_01_FULL_RIF_OP11_03_49_14_curated
RifSed_csp2_16ft_2_scaffold_14419_17
R_RIF_OP11_03_49_14, RIF-OP11-3, Microgenomates, Bacteria

Not on your lists

18987..20633
DNA (1647bp) protein (549aa)
ABC-type sugar transport system, periplasmic component id=15190827 bin=GWC1_OP11_49_16_COMPLETE species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC1_OP11_49_16_COMPLETE organism_group=OP11 (Microgenomates)
family 1 extracellular solute-binding protein
Tax=RIFCSPLOWO2_01_FULL_RIF_OP11_03_49_14_curated
RifSed_csp2_16ft_2_scaffold_14419_18
R_RIF_OP11_03_49_14, RIF-OP11-3, Microgenomates, Bacteria

Not on your lists

20713..21267
DNA (555bp) protein (185aa)
hypothetical protein id=15190826 bin=GWC1_OP11_49_16_COMPLETE species=OP11_1 genus=OP11_1 taxon_order=OP11_1 taxon_class=OP11_1 phylum=OP11 tax=GWC1_OP11_49_16_COMPLETE organism_group=OP11 (Microgenomates)
hypothetical protein
Tax=RIFCSPLOWO2_01_FULL_RIF_OP11_03_49_14_curated
RifSed_csp2_16ft_2_scaffold_14419_19
R_RIF_OP11_03_49_14, RIF-OP11-3, Microgenomates, Bacteria

Not on your lists

21633..22154
DNA (522bp) protein (174aa)
hypothetical protein id=15190826 bin=GWC1_OP11_49_16_COMPLETE species=OP11_1 genus=OP11_1 taxon_order=OP11_1 taxon_class=OP11_1 phylum=OP11 tax=GWC1_OP11_49_16_COMPLETE organism_group=OP11 (Microgenomates)
rfaE bifunctional protein
Tax=RIFCSPLOWO2_01_FULL_RIF_OP11_03_49_14_curated
RifSed_csp2_16ft_2_scaffold_14419_20
R_RIF_OP11_03_49_14, RIF-OP11-3, Microgenomates, Bacteria

Not on your lists

22186..22971
DNA (786bp) protein (262aa)
hypothetical protein n=1 Tax=Microgenomates bacterium SCGC AAA040-P11 RepID=UPI00036A78D5
60 KD inner-membrane protein
Tax=RIFCSPLOWO2_01_FULL_RIF_OP11_03_49_14_curated
RifSed_csp2_16ft_2_scaffold_14419_21
R_RIF_OP11_03_49_14, RIF-OP11-3, Microgenomates, Bacteria

Not on your lists

23141..23749
DNA (609bp) protein (203aa)
band 7 protein id=15191711 bin=GWC1_OP11_49_16_COMPLETE species=RAAC19 genus=RAAC19 taxon_order=RAAC19 taxon_class=RAAC19 phylum=OP11 tax=GWC1_OP11_49_16_COMPLETE organism_group=OP11 (Microgenomates)
band 7 protein
Tax=RIFCSPLOWO2_01_FULL_RIF_OP11_03_49_14_curated
RifSed_csp2_16ft_2_scaffold_14419_22
R_RIF_OP11_03_49_14, RIF-OP11-3, Microgenomates, Bacteria

Not on your lists

24602..26224
DNA (1623bp) protein (541aa)
groL; chaperonin GroEL; K04077 chaperonin GroEL id=15190820 bin=GWC1_OP11_49_16_COMPLETE species=GWA2_OP11 genus=GWA2_OP11 taxon_order=GWA2_OP11 taxon_class=GWA2_OP11 phylum=OP11 tax=GWC1_OP11_49_16_COMPLETE organism_group=OP11 (Microgenomates) rbh
hypothetical protein
Tax=RIFCSPLOWO2_01_FULL_RIF_OP11_03_49_14_curated
RifSed_csp2_16ft_2_scaffold_14419_23
R_RIF_OP11_03_49_14, RIF-OP11-3, Microgenomates, Bacteria

Not on your lists

26358..26654
DNA (297bp) protein (99aa)
AIG2 family protein n=1 Tax=Flavobacteriaceae bacterium S85 RepID=UPI000255872D
hypothetical protein
Tax=RIFCSPLOWO2_01_FULL_RIF_OP11_03_49_14_curated
RifSed_csp2_16ft_2_scaffold_14419_24
R_RIF_OP11_03_49_14, RIF-OP11-3, Microgenomates, Bacteria

Not on your lists

26769..27548
DNA (780bp) protein (260aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2FBB0_9BACT
Tax=RIFCSPLOWO2_01_FULL_RIF_OP11_03_49_14_curated
RifSed_csp2_16ft_2_scaffold_14419_25
R_RIF_OP11_03_49_14, RIF-OP11-3, Microgenomates, Bacteria

Not on your lists

27545..27652
DNA (108bp) protein (36aa)
Tax=RIFCSPLOWO2_01_FULL_RIF_OP11_03_49_14_curated
RifSed_csp2_16ft_2_scaffold_14419_26
R_RIF_OP11_03_49_14, RIF-OP11-3, Microgenomates, Bacteria

Not on your lists

27664..28110
DNA (447bp) protein (149aa)
dCMP deaminase n=1 Tax=uncultured bacterium RepID=K2D4U6_9BACT
guanine deaminase
Tax=RIFCSPLOWO2_01_FULL_RIF_OP11_03_49_14_curated
RifSed_csp2_16ft_2_scaffold_14419_27
unknown

Not on your lists

28167..28259
DNA (93bp) protein (31aa)

This feature has no annotations

RifSed_csp2_16ft_2_scaffold_14419_28
R_RIF_OP11_03_49_14, RIF-OP11-3, Microgenomates, Bacteria

Not on your lists

28277..28387
DNA (111bp) protein (37aa)
Tax=RIFCSPLOWO2_01_FULL_RIF_OP11_03_49_14_curated
RifSed_csp2_16ft_2_scaffold_14419_29
R_RIF_OP11_03_49_14, RIF-OP11-3, Microgenomates, Bacteria

Not on your lists

28362..28814
DNA (453bp) protein (151aa)
Putative nucleic acid-binding protein n=1 Tax=Thiorhodovibrio sp. 970 RepID=H8Z758_9GAMM
PilT protein domain-containing protein
Tax=RIFCSPLOWO2_01_FULL_RIF_OP11_03_49_14_curated
RifSed_csp2_16ft_2_scaffold_14419_30
R_RIF_OP11_03_49_14, RIF-OP11-3, Microgenomates, Bacteria

Not on your lists

28811..29398
DNA (588bp) protein (196aa)
YdeN-like n=6 Tax=Legionella pneumophila RepID=Q5ZZE3_LEGPH id=5088025 bin=OP11_3 species=Legionella pneumophila genus=Legionella taxon_order=Legionellales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=OP11_3 organism_group=OP11 (Microgenomates) organism_desc=Complete genome
hypothetical protein
Tax=RIFCSPLOWO2_01_FULL_RIF_OP11_03_49_14_curated
Displaying items 1-30 of 35 in total

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