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07M_4_2014_scaffold_2369

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
07M_4_2014_scaffold_2369_1
CG_CPR10_02, CG_CPR10, Bacteria

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71..1216
DNA (1146bp) protein (382aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI0003760ED3
PHP domain-containing protein
Tax=CG_CPR10_02
07M_4_2014_scaffold_2369_2
CG_CPR10_02, CG_CPR10, Bacteria

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1233..1589
DNA (357bp) protein (119aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI0003760ED3
PHP domain-containing protein
Tax=CG_CPR10_02
07M_4_2014_scaffold_2369_3
RHI_RIF_OD1_07_40_12, RIF-OD1-7, Parcubacteria, Bacteria

Not on your lists

2342..2812
DNA (471bp) protein (157aa)
id=4400129 bin=GWC2_Syntrophobacterales_56_13 species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
Tax=RIFCSPHIGHO2_12_FULL_RIF_OD1_07_40_12_curated
07M_4_2014_scaffold_2369_4

Not on your lists

3455..4504
DNA (1050bp) protein (350aa)
Retron-type reverse transcriptase {ECO:0000313|EMBL:KKS34678.1}; TaxID=1618927 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC2_42_13.;"
Retron-type reverse transcriptase id=3736736 bin=GWC2_OD1_43_27 species=ACD11 genus=ACD11 taxon_order=ACD11 taxon_class=ACD11 phylum=OD1-i tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
RNA-directed DNA polymerase
07M_4_2014_scaffold_2369_5

Not on your lists

4494..4766
DNA (273bp) protein (91aa)
ada; ADA regulatory protein (EC:2.1.1.63); K10778 AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] id=3203 bin=ACD11 species=ACD11 genus=ACD11 taxon_order=ACD11 taxon_class=ACD11 phylum=OD1-i tax=ACD11 organism_group=OD1-i organism_desc=OD1-i
Marine sediment metagenome DNA, contig: S06H3_S11432 {ECO:0000313|EMBL:GAI35431.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
methylated-DNA/protein-cysteine methyltransferase
07M_4_2014_scaffold_2369_6
RLO_RIF_OD1_13_41_11, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

4805..6217
DNA (1413bp) protein (471aa)
hypothetical protein n=1 Tax=Fervidibacteria bacterium SCGC AAA471-D06 RepID=UPI000368CE6C
amidophosphoribosyltransferase
Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_13_41_11_curated
07M_4_2014_scaffold_2369_7
CG_CPR10_01, CG_CPR10, Bacteria

Not on your lists


comp(6249..6596)
DNA (348bp) protein (116aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI0003703DCA
rplT; 50S ribosomal protein L20
Tax=CG_CPR10_01
07M_4_2014_scaffold_2369_8

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comp(6800..7378)
DNA (579bp) protein (193aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI0003668D23
Marine sediment metagenome DNA, contig: S01H4_C04561 {ECO:0000313|EMBL:GAG54625.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
infC; Translation initiation factor IF-3
07M_4_2014_scaffold_2369_9
CG_CPR10_01, CG_CPR10, Bacteria

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comp(7827..8279)
DNA (453bp) protein (151aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI0003733891
SsrA-binding protein
Tax=CG_CPR10_01
07M_4_2014_scaffold_2369_10
RHI_RIF_OD1_06_38_11, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

8319..8996
DNA (678bp) protein (226aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2FEM9_9BACT
uridylate kinase
Tax=RIFCSPHIGHO2_12_FULL_RIF_OD1_06_38_11_curated
07M_4_2014_scaffold_2369_11
unknown

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9001..9426
DNA (426bp) protein (142aa)

This feature has no annotations

07M_4_2014_scaffold_2369_12
Parcubacteria bacterium GW2011_GWB1_43_6, Parcubacteria, Bacteria

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9423..11024
DNA (1602bp) protein (534aa)
arginyl-tRNA synthetase (EC:6.1.1.19)
Arginine-tRNA ligase {ECO:0000313|EMBL:KKT17178.1}; TaxID=1618872 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWB1_43_6.;"
Arginine--tRNA ligase id=3091857 bin=GWB1_Berkelbacteria_38_5 species=ACD58_39_12 genus=ACD58_39_12 taxon_order=ACD58_39_12 taxon_class=ACD58_39_12 phylum=ACD58 tax=GWB1_Berkelbacteria_38_5 organism_group=ACD58 (Berkelbacteria) rbh
07M_4_2014_scaffold_2369_13
CG_CPR10_01, CG_CPR10, Bacteria

Not on your lists

11126..12481
DNA (1356bp) protein (452aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI0003827A64
isoleucyl-tRNA synthetase
Tax=CG_CPR10_01
07M_4_2014_scaffold_2369_14
CG_CPR10_01, CG_CPR10, Bacteria

Not on your lists

12460..14532
DNA (2073bp) protein (691aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI0003827A64
isoleucyl-tRNA synthetase
Tax=CG_CPR10_01
07M_4_2014_scaffold_2369_15
unknown

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14536..14871
DNA (336bp) protein (112aa)

This feature has no annotations

07M_4_2014_scaffold_2369_16
CG_CPR10_01, CG_CPR10, Bacteria

Not on your lists

14872..15591
DNA (720bp) protein (240aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI000364213F
DNA repair protein RecO
Tax=CG_CPR10_01
07M_4_2014_scaffold_2369_17

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15588..17255
DNA (1668bp) protein (556aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI000380028E rbh
Uncharacterized protein {ECO:0000313|EMBL:KKL79540.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
07M_4_2014_scaffold_2369_18

Not on your lists


17272..18672
DNA (1401bp) protein (467aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI0003693DFD
Uncharacterized protein {ECO:0000313|EMBL:KKN97057.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
glycyl-tRNA synthetase
07M_4_2014_scaffold_2369_19
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

18674..19378
DNA (705bp) protein (235aa)
hypothetical protein n=1 Tax=Paenibacillus sp. PAMC 26794 RepID=UPI0002E48010
HAD superfamily hydrolase
Tax=RBG_16_Euryarchaeota_68_12_curated
07M_4_2014_scaffold_2369_20
CG_CPR10_03, CG_CPR10, Bacteria

Not on your lists

19483..20748
DNA (1266bp) protein (422aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI000369C730
peptidase M16 domain-containing protein
Tax=CG_CPR10_03
07M_4_2014_scaffold_2369_21
RBG_13_RIF_OD1_07_36_15_curated, RIF-OD1-7, Parcubacteria, Bacteria

Not on your lists

20745..21773
DNA (1029bp) protein (343aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00037F9E5D rbh
hypothetical protein
Tax=RBG_13_RIF_OD1_07_36_15_curated
07M_4_2014_scaffold_2369_22
CG_CPR03_03, CG_CPR03, Bacteria

Not on your lists

21775..22143
DNA (369bp) protein (123aa)
Ribosomal RNA small subunit methyltransferase I id=2824080 bin=GWC1_OD1_38_17 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
tetrapyrrole (corrin/porphyrin) methylase
Tax=CG_CPR03_03
07M_4_2014_scaffold_2369_23
RBG_13_RIF_OD1_07_37_56_curated, RIF-OD1-7, Parcubacteria, Bacteria

Not on your lists


22161..23540
DNA (1380bp) protein (460aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI000364E1ED
methionyl-tRNA synthetase
Tax=RBG_13_RIF_OD1_07_37_56_curated
07M_4_2014_scaffold_2369_24
unknown

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23663..24319
DNA (657bp) protein (219aa)

This feature has no annotations

07M_4_2014_scaffold_2369_25
R_RIF_OD107_43_32, RIF-OD1-7, Parcubacteria, Bacteria

Not on your lists

24463..25149
DNA (687bp) protein (229aa)
Putative uncharacterized protein id=3543934 bin=GWA1_ZB2_49_26 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
hypothetical protein
Tax=RIFCSPLOWO2_01_FULL_RIF_OD107_43_32_curated
07M_4_2014_scaffold_2369_26
R_RIF_OD1_13_47_11, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

25420..26367
DNA (948bp) protein (316aa)
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_13_47_11_curated
07M_4_2014_scaffold_2369_27

Not on your lists

26610..27890
DNA (1281bp) protein (427aa)
NAD+ synthetase (EC:6.3.1.5)
NH(3)-dependent NAD(+) synthetase n=1 Tax=Methanotorris formicicus Mc-S-70 RepID=H1L0H3_9EURY
Uncharacterized protein {ECO:0000313|EMBL:KKL56544.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
07M_4_2014_scaffold_2369_28
CG_CPR05_02, CG_CPR05, Bacteria

Not on your lists

27900..28613
DNA (714bp) protein (238aa)
ATP synthase F0, A subunit; K02108 F-type H+-transporting ATPase subunit a [EC:3.6.3.14] alias= id=3286137 bin=GWC1_CPR2_39_9 species=ACD58 genus=ACD58 taxon_order=ACD58 taxon_class=ACD58 phylum=ACD58 tax=GWC1_CPR2_39_9 organism_group=CPR2 organism_desc=Good
F0F1-type ATPase subunit A
Tax=CG_CPR05_02
07M_4_2014_scaffold_2369_29

Not on your lists

28657..28887
DNA (231bp) protein (77aa)
transmembrane_regions 10..29 id=9217 bin=ACD15 species=ACD15 genus=ACD15 taxon_order=ACD15 taxon_class=ACD15 phylum=OD1-i tax=ACD15 organism_group=OD1-i organism_desc=OD1-i
ATP synthase subunit c {ECO:0000256|SAAS:SAAS00242779}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
atpE; ATP synthase subunit c
07M_4_2014_scaffold_2369_30
GWA2_OP11_var_36_13, Levybacteria, Microgenomates, Bacteria

Not on your lists

28893..29396
DNA (504bp) protein (168aa)
coiled-coil 76..123 id=92607 bin=ACD61 species=ACD61 genus=ACD61 taxon_order=ACD61 taxon_class=ACD61 phylum=OP11 tax=ACD61 organism_group=OP11 (Microgenomates) organism_desc=OP11
ATP synthase subunit b {ECO:0000313|EMBL:KKP96299.1}; TaxID=1618456 species="Bacteria; Microgenomates.;" source="Microgenomates (Levybacteria) bacterium GW2011_GWA2_36_13.;"
atpF; F0F1-type ATP synthase subunit b
Displaying items 1-30 of 41 in total

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