ggKbase home page

07M_4_2014_scaffold_3042_6

Organism: 07m_4_2014_OD1-related_38_178

near complete RP 37 / 55 BSCG 43 / 51 ASCG 10 / 38
Location: 2998..3573

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor {ECO:0000313|EMBL:KKS48437.1}; TaxID=1618659 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWF2_42_19.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 70.9
  • Coverage: 182.0
  • Bit_score: 266
  • Evalue 3.30e-68
RNA polymerase, sigma-24 subunit, ECF subfamily id=4731799 bin=GWC2_OD1_43_27 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete) similarity UNIREF
DB: UNIREF100
  • Identity: 59.3
  • Coverage: 194.0
  • Bit_score: 235
  • Evalue 5.80e-59
RNA polymerase subunit sigma-24 similarity KEGG
DB: KEGG
  • Identity: 35.1
  • Coverage: 188.0
  • Bit_score: 120
  • Evalue 4.50e-25

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

GWF2_OD1_42_19 → Giovannonibacteria → Parcubacteria → Bacteria

Sequences

DNA sequence
Length: 576
GTGGAAACCCGTACCGATGAACAACTAGTCGCCGATTATCTGAAAGGTGACGAAGAATCATTGGAGATTTTAATTGGGCGCTACATTAGGTCGATTTTTAGTTTTACCTATCGATATGTCGGAAATCCTCAAGAAGCCGAAGATATTACGCAGGAAATTTTTGTAAAAATTTGGCGGAATCTTAAGAAATTCGACCCGAACAGAAGTTTCAAAACTTGGATTTTCAGCATTGCTAAAAATGCCTGCATCGATATTTTAAAAAAGAAAAAAGCCATACCATTTTCTGGGTTTGGGGATGGGGAAGGAAAAAATGCGTTTTTGGAGAGGCTTGCTGATACGGCTCCATTGCCAAATGAGCTTTTCGCAAGAGCCGATATGGCCCGGATATTGAATTCAGCGATGGAAAAATTATTGCCCAAATATCGCATGGTTTTATTTCTCCGCTATAATGATCACTTTAATTTCCGCGAGATCGCCGAATCTCTTGGAGAGCCGTTTGACACCATAAAATCAGGGCACAGACGGGCGCTTATTATGTTAAAAAAGTTGCTGCAAAGCAAAATAATAAAAATATGA
PROTEIN sequence
Length: 192
VETRTDEQLVADYLKGDEESLEILIGRYIRSIFSFTYRYVGNPQEAEDITQEIFVKIWRNLKKFDPNRSFKTWIFSIAKNACIDILKKKKAIPFSGFGDGEGKNAFLERLADTAPLPNELFARADMARILNSAMEKLLPKYRMVLFLRYNDHFNFREIAESLGEPFDTIKSGHRRALIMLKKLLQSKIIKI*