ggKbase home page

07M_4_2014_scaffold_3042

Search features with annotation key words

Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
07M_4_2014_scaffold_3042_1
unknown

Not on your lists

117..326
DNA (210bp) protein (70aa)

This feature has no annotations

07M_4_2014_scaffold_3042_trna_1
unknown

Not on your lists

119..203
DNA (85bp)
transferRNA Ser
07M_4_2014_scaffold_3042_2
R_OD1_Yanofskybacteria_49_17, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

405..608
DNA (204bp) protein (68aa)
Helix-turn-helix domain protein n=1 Tax=Hippea maritima (strain ATCC 700847 / DSM 10411 / MH2) RepID=F2LVL4_HIPMA
helix-turn-helix domain-containing protein
Tax=RIFCSPLOWO2_01_FULL_OD1_Yanofskybacteria_49_17_curated
07M_4_2014_scaffold_3042_3
R_OD1_Magasanikbacteria_51_14, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

613..1440
DNA (828bp) protein (276aa)
pepE; peptidase E; K05995 dipeptidase E [EC:3.4.13.21] id=5093978 bin=PER_GWF2_33_10 species=PER_GWF2_33_10 genus=PER_GWF2_33_10 taxon_order=PER_GWF2_33_10 taxon_class=PER_GWF2_33_10 phylum=PER tax=PER_GWF2_33_10 organism_group=PER (Peregrinibacteria) organism_desc=No RuBisCO in this genome
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_OD1_Magasanikbacteria_51_14_curated
07M_4_2014_scaffold_3042_4
R_OD1_52_25, Parcubacteria, Bacteria

Not on your lists

comp(1657..1914)
DNA (258bp) protein (86aa)
Recombinase n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PWR3_9BACT
Tax=RIFCSPLOWO2_01_FULL_OD1_52_25_curated
07M_4_2014_scaffold_3042_5
GWA2_OD1_39_24, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(2489..2815)
DNA (327bp) protein (109aa)
Recombinase {ECO:0000313|EMBL:KKR15467.1}; TaxID=1618634 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Falkowbacteria) bacterium GW2011_GWA2_39_24.;"
Recombinase id=2016164 bin=GWE2_Bacteroidetes_40_15 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=GWE2_Bacteroidetes_40_15 organism_group=Bacteroidetes organism_desc=Good +
recombinase
07M_4_2014_scaffold_3042_6
GWF2_OD1_42_19, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

2998..3573
DNA (576bp) protein (192aa)
RNA polymerase sigma factor {ECO:0000313|EMBL:KKS48437.1}; TaxID=1618659 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWF2_42_19.;"
RNA polymerase, sigma-24 subunit, ECF subfamily id=4731799 bin=GWC2_OD1_43_27 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
RNA polymerase subunit sigma-24
07M_4_2014_scaffold_3042_7
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists

3570..5198
DNA (1629bp) protein (543aa)
transmembrane_regions 7..29 id=120527 bin=ACD76 species=ACD76 genus=ACD76 taxon_order=ACD76 taxon_class=ACD76 phylum=OD1 tax=ACD76 organism_group=OD1 (Parcubacteria) organism_desc=OD1
Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
07M_4_2014_scaffold_3042_8
R_OD1_Kaiserbacteria_49_34, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

5200..5577
DNA (378bp) protein (126aa)
membrane protein n=1 Tax=Bacillus thuringiensis RepID=UPI000349DC7F
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_OD1_Kaiserbacteria_49_34_curated
07M_4_2014_scaffold_3042_9

Not on your lists

5975..6391
DNA (417bp) protein (139aa)
Uncharacterized protein {ECO:0000313|EMBL:KKS36857.1}; TaxID=1618820 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_42_14.;"
id=4731800 bin=GWC2_OD1_43_27 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
07M_4_2014_scaffold_3042_10
R_RIF_OD1_07_41_9, RIF-OD1-7, Parcubacteria, Bacteria

Not on your lists

6402..7427
DNA (1026bp) protein (342aa)
Spore coat assembly protein SafA n=1 Tax=uncultured bacterium RepID=K2AUF4_9BACT
Allergen V5/Tpx-1 family protein
Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_07_41_9_curated
07M_4_2014_scaffold_3042_11

Not on your lists

7415..7879
DNA (465bp) protein (155aa)
Uncharacterized protein {ECO:0000313|EMBL:KKS36858.1}; TaxID=1618820 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_42_14.;"
id=4731801 bin=GWC2_OD1_43_27 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
07M_4_2014_scaffold_3042_12
R_RIF_OD1_13_59_16, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

7883..8149
DNA (267bp) protein (89aa)
Efflux transporter, RND family, MFP subunit (Fragment) id=4731802 bin=GWC2_OD1_43_27 species=ACD81 genus=ACD81 taxon_order=ACD81 taxon_class=ACD81 phylum=OD1 tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_13_59_16_curated
07M_4_2014_scaffold_3042_13
R_OD1_39_11, Parcubacteria, Bacteria

Not on your lists

8300..8521
DNA (222bp) protein (74aa)
Tax=RIFCSPLOWO2_01_FULL_OD1_39_11_curated
Displaying 14 items

View Taxonomy