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07M_4_2014_scaffold_168

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Displaying items 1-30 of 43 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
07M_4_2014_scaffold_168_1
R_OD1_56_20, Parcubacteria, Bacteria

Not on your lists

2..973
DNA (972bp) protein (324aa)
O-antigen polymerase family protein id=4901182 bin=GWC2_OD1_43_27 species=ACD81 genus=ACD81 taxon_order=ACD81 taxon_class=ACD81 phylum=OD1 tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
Tax=RIFCSPLOWO2_01_FULL_OD1_56_20_curated
07M_4_2014_scaffold_168_2
GWB1_OD1_41_12, Wolfebacteria, Parcubacteria, Bacteria

Not on your lists

984..2294
DNA (1311bp) protein (437aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR89166.1}; TaxID=1619006 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Wolfebacteria) bacterium GW2011_GWB1_41_12.;"
TPR domain-containing protein id=5803035 bin=OD1_GWC2_34_28 species=Clostridiales bacterium 1_7_47FAA genus=unknown taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
O-antigen polymerase
07M_4_2014_scaffold_168_3
GWC1_OD1_48_8_partial, Jorgensenbacteria, Parcubacteria, Bacteria

Not on your lists

2278..2859
DNA (582bp) protein (194aa)
Uncharacterized protein {ECO:0000313|EMBL:KKU98747.1}; TaxID=1618666 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Jorgensenbacteria) bacterium GW2011_GWC1_48_8.;"
07M_4_2014_scaffold_168_4
RLO_Melainabacteria_35_11, Melainabacteria, Bacteria

Not on your lists

2863..4815
DNA (1953bp) protein (651aa)
asparagine synthase id=2171152 bin=GWB2_Nitrospirae_rel_47_37 species=Pedobacter agri genus=Pedobacter taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
asparagine synthase
Tax=RIFCSPLOWO2_12_FULL_Melainabacteria_35_11_curated
07M_4_2014_scaffold_168_5
R_OD1_Jorgensenbacteria_45_25b, Jorgensenbacteria, Parcubacteria, Bacteria

Not on your lists

4812..5615
DNA (804bp) protein (268aa)
UDP-glucose/GDP-mannose dehydrogenase dimerization id=4077955 bin=GWB1_KAZAN_52_7 species=GWC1_KAZAN_52_13 genus=GWC1_KAZAN_52_13 taxon_order=GWC1_KAZAN_52_13 taxon_class=GWC1_KAZAN_52_13 phylum=KAZAN tax=GWB1_KAZAN_52_7 organism_group=Kazan
ugd; UDP-glucose 6-dehydrogenase
Tax=RIFCSPLOWO2_01_FULL_OD1_Jorgensenbacteria_45_25b_curated
07M_4_2014_scaffold_168_6
R_OD1_Jorgensenbacteria_45_25b, Jorgensenbacteria, Parcubacteria, Bacteria

Not on your lists

5620..6807
DNA (1188bp) protein (396aa)
Glycosyl transferase family 9 n=1 Tax=Desulfobacca acetoxidans (strain ATCC 700848 / DSM 11109 / ASRB2) RepID=F2NJJ8_DESAR
glycosyl transferase
Tax=RIFCSPLOWO2_01_FULL_OD1_Jorgensenbacteria_45_25b_curated
07M_4_2014_scaffold_168_7
RLO_OD1_Jorgensenbacteria_42_11, Jorgensenbacteria, Parcubacteria, Bacteria

Not on your lists

6800..7984
DNA (1185bp) protein (395aa)
Glycosyl transferase group 1 id=2171156 bin=GWB2_Nitrospirae_rel_47_37 species=Fischerella sp. JSC-11 genus=Fischerella taxon_order=Stigonematales taxon_class=unknown phylum=Cyanobacteria tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
glycosyl transferase group 1
Tax=RIFCSPLOWO2_12_FULL_OD1_Jorgensenbacteria_42_11_curated
07M_4_2014_scaffold_168_8
GWB1_OD1_49_9, Jorgensenbacteria, Parcubacteria, Bacteria

Not on your lists

7981..8721
DNA (741bp) protein (247aa)
Methyltransferase, FkbM family n=1 Tax=Moorea producens 3L RepID=F4XYR4_9CYAN
Methyltransferase, FkbM family {ECO:0000313|EMBL:KKW11981.1}; TaxID=1618664 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Jorgensenbacteria) bacterium GW2011_GWB1_49_9.;"
FkbM family methyltransferase
07M_4_2014_scaffold_168_9
R_OD1_Yanofskybacteria_43_32, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

8790..10247
DNA (1458bp) protein (486aa)
hypothetical protein n=1 Tax=Omnitrophica bacterium SCGC AAA257-O07 RepID=UPI0003B4D3FF rbh
radical SAM protein
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_43_32_curated
07M_4_2014_scaffold_168_10
GWA2_OD1_49_9, Parcubacteria, Bacteria

Not on your lists

10331..11359
DNA (1029bp) protein (343aa)
hypothetical protein n=1 Tax=candidate division OD1 bacterium SCGC AAA011-J16 RepID=UPI000373A54D
dTDP-glucose 4,6-dehydratase {ECO:0000313|EMBL:KKW12607.1}; TaxID=1618852 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_49_9.;"
dTDP-glucose 4,6-dehydratase
07M_4_2014_scaffold_168_11
unknown

Not on your lists

11298..11867
DNA (570bp) protein (190aa)

This feature has no annotations

07M_4_2014_scaffold_168_12
R_OD1_Kaiserbacteria_55_25, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

11874..12587
DNA (714bp) protein (238aa)
Glucose-1-phosphate thymidylyltransferase (EC:2.7.7.24)
Glucose-1-phosphate thymidylyltransferase id=4501541 bin=GWA2_OP3_52_12 species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_55_25_curated
07M_4_2014_scaffold_168_13

Not on your lists

12592..13440
DNA (849bp) protein (283aa)
dTDP-4-dehydrorhamnose reductase {ECO:0000313|EMBL:KKU68865.1}; TaxID=1618842 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_47_16.;"
dTDP-4-dehydrorhamnose reductase id=1956105 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria) rbh
Dtdp-4-dehydrorhamnose reductase
07M_4_2014_scaffold_168_14
R_OD1_45_48, Parcubacteria, Bacteria

Not on your lists

13416..14669
DNA (1254bp) protein (418aa)
SAM-dependent methyltransferase id=1956104 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria) rbh
C-methyltransferase
Tax=RIFCSPLOWO2_01_FULL_OD1_45_48_curated
07M_4_2014_scaffold_168_15
RBG_16_Pacearchaeota_35_8_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

14750..15598
DNA (849bp) protein (283aa)
type 11 methyltransferase id=7202377 bin=TA06_GWE2_final species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=TA06_GWE2_final organism_group=TA06
SAM-dependent methyltransferase
Tax=RBG_16_Pacearchaeota_35_8_curated
07M_4_2014_scaffold_168_16
R_RIF_OD1_12_48_26, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

15603..16652
DNA (1050bp) protein (350aa)
CgeB family protein n=1 Tax=Desulfomicrobium baculatum (strain DSM 4028 / VKM B-1378) RepID=C7LW19_DESBD
CgeB family protein
Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_48_26_curated
07M_4_2014_scaffold_168_17
R_OD1_Jorgensenbacteria_45_25b, Jorgensenbacteria, Parcubacteria, Bacteria

Not on your lists

16649..17536
DNA (888bp) protein (296aa)
Glycosyl transferase, family 2 n=1 Tax=uncultured bacterium RepID=K2BWW1_9BACT
glycosyl transferase
Tax=RIFCSPLOWO2_01_FULL_OD1_Jorgensenbacteria_45_25b_curated
07M_4_2014_scaffold_168_18
GWA2_WOR_2_47_8_curated, WOR-2, Bacteria

Not on your lists

17545..18696
DNA (1152bp) protein (384aa)
Glycosyl transferase group 1 id=2171159 bin=GWB2_Nitrospirae_rel_47_37 species=Desulfohalobium retbaense genus=Desulfohalobium taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum) rbh
group 1 glycosyl transferase rbh
Tax=GWA2_WOR_2_47_8_curated
07M_4_2014_scaffold_168_19
GWB1_OD1_49_9, Jorgensenbacteria, Parcubacteria, Bacteria

Not on your lists

18674..19966
DNA (1293bp) protein (431aa)
Uncharacterized protein n=1 Tax=Vibrio coralliilyticus OCN008 RepID=U0ET80_9VIBR
Uncharacterized protein {ECO:0000313|EMBL:KKW11965.1}; TaxID=1618664 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Jorgensenbacteria) bacterium GW2011_GWB1_49_9.;"
hypothetical protein
07M_4_2014_scaffold_168_20
R_OD1_Wolfebacteria_38_11, Wolfebacteria, Parcubacteria, Bacteria

Not on your lists

19963..21291
DNA (1329bp) protein (443aa)
group 1 glycosyl transferase id=718748 bin=RAAC39 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=RAAC39 organism_group=Ignavibacteria
group 1 glycosyl transferase
Tax=RIFCSPLOWO2_01_FULL_OD1_Wolfebacteria_38_11_curated
07M_4_2014_scaffold_168_21
R_OD1_Wolfebacteria_38_11, Wolfebacteria, Parcubacteria, Bacteria

Not on your lists

21299..23068
DNA (1770bp) protein (590aa)
glycosyl transferase family protein id=15190636 bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete
hypothetical protein
Tax=RIFCSPLOWO2_01_FULL_OD1_Wolfebacteria_38_11_curated
07M_4_2014_scaffold_168_22
GWE2_OD1_39_37, Parcubacteria, Bacteria

Not on your lists

23077..24078
DNA (1002bp) protein (334aa)
GDP-L-fucose synthetase (EC:1.1.1.271)
GDP-L-fucose synthase n=1 Tax=uncultured bacterium RepID=K1Z9V5_9BACT
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:KKR21162.1}; TaxID=1618950 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWE2_39_37.;"
07M_4_2014_scaffold_168_23
GWB2_Geobacteraceae_52_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24047..25108
DNA (1062bp) protein (354aa)
Uncharacterized protein id=2211343 bin=GWB2_Geobacter-like_52_12 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Geobacter-like_52_12 organism_group=Deltaproteobacteria organism_desc=Good
hypothetical protein
Tax=GWB2_Geobacteraceae_52_12_curated
07M_4_2014_scaffold_168_24
R_OP3X_45_10, OP3X, Bacteria

Not on your lists

25127..26296
DNA (1170bp) protein (390aa)
class I/II aminotransferase (EC:2.6.1.1)
Aminotransferase, class I and II id=4680833 bin=GWC2_Planctomycetes_45_44 species=Candidatus Puniceispirillum marinum genus=Candidatus Puniceispirillum taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Planctomycetes_45_44 organism_group=Planctomycetes organism_desc=Novel; good
Tax=RIFCSPLOWO2_01_FULL_OP3X_45_10_curated
07M_4_2014_scaffold_168_25
Pyrococcus sp. ST04, Pyrococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

Not on your lists

26318..27472
DNA (1155bp) protein (385aa)
2-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_01025}; EC=2.3.3.13 {ECO:0000256|HAMAP-Rule:MF_01025};; Alpha-IPM synthase {ECO:0000256|HAMAP-Rule:MF_01025}; Alpha-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_01025}; TaxID=1183377 species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Pyrococcus.;" source="Pyrococcus sp. ST04.;"
2-isopropylmalate synthase n=1 Tax=Pyrococcus sp. ST04 RepID=I3RDY1_9EURY
2-isopropylmalate synthase
07M_4_2014_scaffold_168_26
GWB2_Deltaproteobacteria_55_19_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27469..28284
DNA (816bp) protein (272aa)
acoA; acetoin dehydrogenase E1 component (TPP-dependent alpha subunit) (EC:1.1.1.303 2.3.1.190)
Putative dehydrogenase E1 component id=2008815 bin=GWB2_Proteobacteria_55_19 species=uncultured marine microorganism HF4000_007I05 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB2_Proteobacteria_55_19 organism_group=Proteobacteria organism_desc=Good
Tax=GWB2_Deltaproteobacteria_55_19_curated
07M_4_2014_scaffold_168_27
RIFOXYD2_FULL_Elusimicrobia_34_15_curated, Elusimicrobia, Bacteria

Not on your lists

28257..29159
DNA (903bp) protein (301aa)
acoB; TPP-dependent acetoin dehydrogenase beta-subunit (EC:1.1.1.-)
Putative transketolase, pyridine binding domain protein id=3930263 bin=GWF2_Nitrospirae_44_13 species=uncultured marine microorganism HF4000_007I05 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
Tax=RIFOXYD2_FULL_Elusimicrobia_34_15_curated
07M_4_2014_scaffold_168_28
RIFOXYD2_FULL_Elusimicrobia_34_30_curated, Elusimicrobia, Bacteria

Not on your lists

29146..29682
DNA (537bp) protein (179aa)
hypothetical protein n=1 Tax=SAR324 cluster bacterium SCGC AB-629-J17 RepID=UPI00035C53D7
NUDIX hydrolase
Tax=RIFOXYD2_FULL_Elusimicrobia_34_30_curated
07M_4_2014_scaffold_168_29
GWF2_OP11_38_6, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

29795..31249
DNA (1455bp) protein (485aa)
Radical SAM domain protein {ECO:0000313|EMBL:KKQ78251.1}; TaxID=1618432 species="Bacteria; Microgenomates.;" source="Microgenomates (Daviesbacteria) bacterium GW2011_GWF2_38_6.;"
Radical SAM domain protein id=2211128 bin=GWA2_Elusimicrobia_56_46 species=Methanoplanus petrolearius genus=Methanoplanus taxon_order=Methanomicrobiales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWA2_Elusimicrobia_56_46 organism_group=Elusimicrobia organism_desc=Good
Radical SAM domain-containing protein
07M_4_2014_scaffold_168_30
GWA2_WOR_2_45_18_curated, WOR-2, Bacteria

Not on your lists

31324..32016
DNA (693bp) protein (231aa)
Histidinol-phosphate phosphatase family protein id=3217076 bin=GWA2_OP3_53_43 species=Leptospirillum ferriphilum genus=Leptospirillum taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_OP3_53_43 organism_group=OP3 (Omnitrophica) organism_desc=Was designated as curated version. Not curated. rp block places as OP3
histidinol-phosphate phosphatase family protein
Tax=GWA2_WOR_2_45_18_curated
Displaying items 1-30 of 43 in total

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