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bjp_ig3402_scaffold_1963

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
bjp_ig3402_scaffold_1963_1
R_RIF_OD1_08_38_39, RIF-OD1-8, Parcubacteria, Bacteria

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98..1216
DNA (1119bp) protein (373aa)
membrane-associated zinc metalloprotease; K11749 regulator of sigma E protease [EC:3.4.24.-] Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_08_38_39_curated
Membrane-associated zinc metalloprotease id=1947693 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
membrane-associated zinc metalloprotease
bjp_ig3402_scaffold_1963_2

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1672..2724
DNA (1053bp) protein (351aa)
Rod shape-determining protein mreB {ECO:0000313|EMBL:KKW22435.1}; TaxID=1618856 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_51_12.;"
rca:Rcas_1670 rod shape-determining protein MreB; K03569 rod shape-determining protein MreB and related proteins id=136750 bin=ACD8 species=ACD8 genus=ACD8 taxon_order=ACD8 taxon_class=ACD8 phylum=OD1-i tax=ACD8 organism_group=OD1-i organism_desc=OD1-i rbh
MreB/Mrl family cell shape determining protein
bjp_ig3402_scaffold_1963_3
GWC2_OD1_42_6_partial, Parcubacteria, Bacteria

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2757..3551
DNA (795bp) protein (265aa)
Cell shape-determining protein MreC n=1 Tax=uncultured bacterium RepID=K2F740_9BACT
Cell shape-determining protein MreC Tax=GWC2_OD1_42_6_partial
mreC; cell shape-determining protein MreC
bjp_ig3402_scaffold_1963_4
unknown

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3558..4085
DNA (528bp) protein (176aa)

This feature has no annotations

bjp_ig3402_scaffold_1963_5
BJP_IG2158_OD1_28_51, Parcubacteria, Bacteria

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4051..5970
DNA (1920bp) protein (640aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2G5I6_9BACT
mrdA; peptidoglycan transpeptidase
Tax=BJP_IG2158_OD1_28_51
bjp_ig3402_scaffold_1963_6
R_OD1_Azambacteria_44_14, Azambacteria, Parcubacteria, Bacteria

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6113..6571
DNA (459bp) protein (153aa)
greA; transcription elongation factor GreA; K03624 transcription elongation factor GreA Tax=RIFCSPLOWO2_02_FULL_OD1_Azambacteria_44_14_curated
Transcription elongation factor GreA id=3012689 bin=GWC1_OD1_38_17 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
greA; transcription elongation factor GreA
bjp_ig3402_scaffold_1963_7
R_RIF_OD1_08_38_39, RIF-OD1-8, Parcubacteria, Bacteria

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6577..8076
DNA (1500bp) protein (500aa)
lysyl-tRNA synthetase; K04567 lysyl-tRNA synthetase, class II [EC:6.1.1.6] Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_08_38_39_curated
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA010-E09 RepID=UPI00037C5D03
lysyl-tRNA synthetase
bjp_ig3402_scaffold_1963_8
unknown

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comp(8167..8298)
DNA (132bp) protein (44aa)

This feature has no annotations

bjp_ig3402_scaffold_1963_9

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8346..9260
DNA (915bp) protein (305aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR03641.1}; TaxID=1618962 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWF2_39_13b.;"
MhpC4; alpha/beta hydrolase id=5090522 bin=GWC2_PER_33_13 species=PER_GWC2_33_13 genus=PER_GWC2_33_13 taxon_order=PER_GWC2_33_13 taxon_class=PER_GWC2_33_13 phylum=PER tax=GWC2_PER_33_13 organism_group=PER (Peregrinibacteria) organism_desc=No RuBisCO in this genome
alpha/beta hydrolase fold protein
bjp_ig3402_scaffold_1963_10
R_RIF_OD1_05_43_15b, RIF-OD1-5, Parcubacteria, Bacteria

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9497..11056
DNA (1560bp) protein (520aa)
MurF; UDP-N-acetylmuramyl pentapeptide synthase; K01929 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_05_43_15b_curated
MurF; UDP-N-acetylmuramyl pentapeptide synthase; K01929 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] id=5090521 bin=GWC2_PER_33_13 species=PER_GWC2_33_13 genus=PER_GWC2_33_13 taxon_order=PER_GWC2_33_13 taxon_class=PER_GWC2_33_13 phylum=PER tax=GWC2_PER_33_13 organism_group=PER (Peregrinibacteria) organism_desc=No RuBisCO in this genome
UDP-N-acetylmuramyl pentapeptide synthase (EC:6.3.2.10)
bjp_ig3402_scaffold_1963_11
unknown

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comp(11065..11304)
DNA (240bp) protein (80aa)

This feature has no annotations

bjp_ig3402_scaffold_1963_12

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11350..12738
DNA (1389bp) protein (463aa)
Uncharacterized protein {ECO:0000313|EMBL:KKO02799.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
degt/dnrj/eryc1/strs aminotransferase id=5090520 bin=GWC2_PER_33_13 species=PER_GWC2_33_13 genus=PER_GWC2_33_13 taxon_order=PER_GWC2_33_13 taxon_class=PER_GWC2_33_13 phylum=PER tax=GWC2_PER_33_13 organism_group=PER (Peregrinibacteria) organism_desc=No RuBisCO in this genome
putative PLP-dependent enzyme possibly involved in cell wall biogenesis
bjp_ig3402_scaffold_1963_13
RBG_13_RIF_OD1_07_36_15_curated, RIF-OD1-7, Parcubacteria, Bacteria

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12965..14020
DNA (1056bp) protein (352aa)
hypothetical protein Tax=RBG_13_RIF_OD1_07_36_15_curated
methicillin resistance protein id=136897 bin=ACD8 species=ACD8 genus=ACD8 taxon_order=ACD8 taxon_class=ACD8 phylum=OD1-i tax=ACD8 organism_group=OD1-i organism_desc=OD1-i rbh
hypothetical protein
bjp_ig3402_scaffold_1963_14

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14193..14987
DNA (795bp) protein (265aa)
id=3544010 bin=GWA1_ZB2_49_26 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
Uncharacterized protein {ECO:0000313|EMBL:KKW14265.1}; TaxID=1618853 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_50_10.;"
bjp_ig3402_scaffold_1963_15
unknown

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15153..15461
DNA (309bp) protein (103aa)

This feature has no annotations

bjp_ig3402_scaffold_1963_16
unknown

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15409..15675
DNA (267bp) protein (89aa)

This feature has no annotations

bjp_ig3402_scaffold_1963_17
CG_CPR01_01, CG_CPR01, Bacteria

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15685..16509
DNA (825bp) protein (275aa)
orotate phosphoribosyltransferase (EC:2.4.2.10); K00762 orotate phosphoribosyltransferase [EC:2.4.2.10] Tax=CG_CPR01_01
hypothetical protein n=1 Tax=candidate division OD1 bacterium SCGC AAA011-J16 RepID=UPI0003792159
pyrE; orotate phosphoribosyltransferase
bjp_ig3402_scaffold_1963_18
R_SM2F11_46_11, SM2F11, Bacteria

Not on your lists

comp(16924..18555)
DNA (1632bp) protein (544aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DH73_SINAD
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_SM2F11_46_11_curated
hypothetical protein
bjp_ig3402_scaffold_1963_19
R_RIF_OD1_12_48_26, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(18694..20310)
DNA (1617bp) protein (539aa)
Glycosyl transferase family 39 n=1 Tax=uncultured bacterium RepID=K2EBP0_9BACT
hypothetical protein Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_48_26_curated
hypothetical protein
bjp_ig3402_scaffold_1963_20
unknown

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20420..21253
DNA (834bp) protein (278aa)

This feature has no annotations

bjp_ig3402_scaffold_1963_21
CG_CPR05_02, CG_CPR05, Bacteria

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21366..21896
DNA (531bp) protein (177aa)
Uncharacterized protein Tax=CG_CPR05_02
bjp_ig3402_scaffold_1963_22
GWC1_OD1-like_46_13, Azambacteria, Parcubacteria, Bacteria

Not on your lists

21961..24459
DNA (2499bp) protein (833aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI00037C4201 rbh
Uncharacterized protein {ECO:0000313|EMBL:KKU20768.1}; TaxID=1618619 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Azambacteria) bacterium GW2011_GWC1_46_13.;"
hypothetical protein
bjp_ig3402_scaffold_1963_23
Candidatus Magnetoovum chiemensis, Candidatus Magnetoovum, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

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24643..25425
DNA (783bp) protein (261aa)
Methyltransferase {ECO:0000256|RuleBase:RU362026}; EC=2.1.1.- {ECO:0000256|RuleBase:RU362026};; TaxID=1609970 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Candidatus Magnetoovum.;" s
DNA methylase N-4/N-6 domain protein id=4213599 bin=GWC2_Planctomycetes_45_44 species=Hippea maritima genus=Hippea taxon_order=Desulfurellales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Planctomycetes_45_44 organism_group=Planctomycetes organism_desc=Novel; good rbh
DNA methylase N-4/N-6 domain-containing protein
bjp_ig3402_scaffold_1963_24
Candidatus Magnetoovum chiemensis, Candidatus Magnetoovum, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

25428..26327
DNA (900bp) protein (300aa)
hypothetical protein n=1 Tax=Capnocytophaga cynodegmi RepID=UPI00036624AE rbh
Uncharacterized protein {ECO:0000313|EMBL:KJR41044.1}; TaxID=1609970 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Candidatus Magnetoovum.;" source="Candidatus Magnetoovum chiemensis.
bjp_ig3402_scaffold_1963_25
R_OD1_Magasanikbacteria_44_11, Magasanikbacteria, Parcubacteria, Bacteria

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26345..27265
DNA (921bp) protein (307aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_OD1_Magasanikbacteria_44_11_curated
ter:Tery_3514 hypothetical protein id=133188 bin=ACD81 species=ACD81 genus=ACD81 taxon_order=ACD81 taxon_class=ACD81 phylum=OD1 tax=ACD81 organism_group=OD1 (Parcubacteria) organism_desc=OD1
hypothetical protein
bjp_ig3402_scaffold_1963_26
Candidatus Magnetoovum chiemensis, Candidatus Magnetoovum, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

27268..28335
DNA (1068bp) protein (356aa)
Site-specific DNA-methyltransferase (Adenine-specific) {ECO:0000313|EMBL:KJR41045.1}; TaxID=1609970 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Candidatus Magnetoovum.;" source="Can
Adenine-specific methyltransferase id=4213603 bin=GWC2_Planctomycetes_45_44 species=Brachyspira hampsonii genus=Brachyspira taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWC2_Planctomycetes_45_44 organism_group=Planctomycetes organism_desc=Novel; good rbh
adenine-specific methyltransferase
bjp_ig3402_scaffold_1963_27
RIFOXYB1_FULL_RIF_OD1_06_38_37_curated, RIF-OD1-6, Parcubacteria, Bacteria

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28319..29041
DNA (723bp) protein (241aa)
Ribonuclease H (EC:3.1.26.4); K03470 ribonuclease HII [EC:3.1.26.4] Tax=RIFOXYB1_FULL_RIF_OD1_06_38_37_curated
rnhB; ribonuclease HII (EC:3.1.26.4)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI000378DBB9
bjp_ig3402_scaffold_1963_28

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29272..29808
DNA (537bp) protein (179aa)
DDE family endonuclease n=1 Tax=Propionibacterium acidifaciens F0233 RepID=U2Q7R0_9ACTO
Marine sediment metagenome DNA, contig: S12H4_L01600 {ECO:0000313|EMBL:GAI87974.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
bjp_ig3402_scaffold_1963_29
GWC2_OP11_39_8_plus, Gottesmanbacteria, Microgenomates, Bacteria

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29799..30308
DNA (510bp) protein (170aa)
Transposase n=1 Tax=Ralstonia pickettii DTP0602 RepID=U3QJG2_RALPI
Transposase of ISAar31, IS630 family {ECO:0000313|EMBL:KKR33035.1}; TaxID=1618450 species="Bacteria; Microgenomates.;" source="Microgenomates (Gottesmanbacteria) bacterium GW2011_GWC2_39_8.;"
transposase
Displaying 29 items

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