ggKbase home page

ar4r2_scaffold_1320

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ar4r2_scaffold_1320_1

Not on your lists

comp(348..725)
DNA (378bp) protein (126aa)
transmembrane_regions 5..27 id=132366 bin=ACD80 species=ACD80 genus=ACD80 taxon_order=ACD80 taxon_class=ACD80 phylum=SR1 tax=ACD80 organism_group=SR1
Uncharacterized protein {ECO:0000313|EMBL:EKD25400.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
hypothetical protein
ar4r2_scaffold_1320_2

Not on your lists

comp(747..1388)
DNA (642bp) protein (214aa)
transmembrane_regions 15..37 id=132362 bin=ACD80 species=ACD80 genus=ACD80 taxon_order=ACD80 taxon_class=ACD80 phylum=SR1 tax=ACD80 organism_group=SR1
Uncharacterized protein {ECO:0000313|EMBL:EKD25399.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
hypothetical protein
ar4r2_scaffold_1320_3
ACD80, SR1, Bacteria

Not on your lists

comp(1469..1879)
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=uncultured bacterium (gcode 4) RepID=K1XYF0_9BACT
hypothetical protein
Tax=ACD80
ar4r2_scaffold_1320_4

Not on your lists

comp(1907..2095)
DNA (189bp) protein (63aa)
hypothetical protein n=1 Tax=candidate division OP11 bacterium UW 659-4-B07 RepID=UPI00035F2380
Uncharacterized protein {ECO:0000313|EMBL:EKD25397.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
ar4r2_scaffold_1320_5

Not on your lists

comp(2183..3253)
DNA (1071bp) protein (357aa)
pilus retraction protein PilT; K02669 twitching motility protein PilT id=132369 bin=ACD80 species=ACD80 genus=ACD80 taxon_order=ACD80 taxon_class=ACD80 phylum=SR1 tax=ACD80 organism_group=SR1 rbh
Uncharacterized protein {ECO:0000313|EMBL:EKD25403.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
Twitching motility protein
ar4r2_scaffold_1320_6
R_Peregrinibacteria_39_12, Peregrinibacteria, Bacteria

Not on your lists

3569..5047
DNA (1479bp) protein (493aa)
UPI0003D01FFB related cluster n=1 Tax=unknown RepID=UPI0003D01FFB rbh
cell envelope-related transcriptional attenuator
Tax=RIFCSPLOWO2_01_FULL_Peregrinibacteria_39_12_curated
ar4r2_scaffold_1320_7

Not on your lists

5138..5869
DNA (732bp) protein (244aa)
rnc; ribonuclease III; K03685 ribonuclease III [EC:3.1.26.3] id=132368 bin=ACD80 species=ACD80 genus=ACD80 taxon_order=ACD80 taxon_class=ACD80 phylum=SR1 tax=ACD80 organism_group=SR1 rbh
Ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231299}; EC=3.1.26.3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231445};; Ribonuclease III {ECO:0000256|HAMAP-Rule:MF_00104}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
hypothetical protein
ar4r2_scaffold_1320_8

Not on your lists

5937..6905
DNA (969bp) protein (323aa)
Protein translocase subunit secF n=1 Tax=candidate division TM7 single-cell isolate TM7a RepID=UPI0001743759 id=983486 bin=RAAC1_SR1 species=candidate division TM7 single-cell isolate TM7a genus=unknown taxon_order=unknown taxon_class=unknown phylum=Candidatus Saccharibacteria tax=RAAC1_SR1 organism_group=SR1 rbh
Protein translocase subunit secF
Uncharacterized protein {ECO:0000313|EMBL:EKD25404.1}; Flags: Fragment;; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
ar4r2_scaffold_1320_9
GWD1_Spirochaetes_27_9_curated, Spirochaetes, Bacteria

Not on your lists

7050..7772
DNA (723bp) protein (241aa)
pseudouridine synthase; K06180 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] id=983489 bin=RAAC1_SR1 species=RAAC1_SR1 genus=RAAC1_SR1 taxon_order=RAAC1_SR1 taxon_class=RAAC1_SR1 phylum=SR1 tax=RAAC1_SR1 organism_group=SR1
hypothetical protein
Tax=GWD1_Spirochaetes_27_9_curated
ar4r2_scaffold_1320_10

Not on your lists

7852..9507
DNA (1656bp) protein (552aa)
Uncharacterized protein (Fragment) n=1 Tax=uncultured bacterium (gcode 4) RepID=K1ZJ73_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD44473.1}; Flags: Fragment;; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
ar4r2_scaffold_1320_11

Not on your lists

9639..10340
DNA (702bp) protein (234aa)
Uncharacterized protein n=1 Tax=uncultured bacterium (gcode 4) RepID=K1Z4J2_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD44472.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
ar4r2_scaffold_1320_12

Not on your lists

10851..11162
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=uncultured bacterium (gcode 4) RepID=K1Z5B3_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD44471.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
hypothetical protein
ar4r2_scaffold_1320_13

Not on your lists

11180..12280
DNA (1101bp) protein (367aa)
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase n=1 Tax=Bacillus alcalophilus ATCC 27647 RepID=J8Q5V5_BACAO id=983493 bin=RAAC1_SR1 species=Bacillus alcalophilus genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=RAAC1_SR1 organism_group=SR1 rbh
UDP-N-acetylglucosamine-N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
Undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase {ECO:0000313|EMBL:EKD66178.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
ar4r2_scaffold_1320_14
unknown

Not on your lists

12803..15355
DNA (2553bp) protein (851aa)
hypothetical protein n=1 Tax=candidate division OP11 bacterium UW 659-4-B07 RepID=UPI0003648771
hypothetical protein
ar4r2_scaffold_1320_15
GWC1_OD1_38_17, Parcubacteria, Bacteria

Not on your lists

15592..15978
DNA (387bp) protein (129aa)
hypothetical protein n=1 Tax=candidate division OP11 bacterium UW 659-4-B07 RepID=UPI00035D80BF
S23 ribosomal protein {ECO:0000313|EMBL:KKQ58609.1}; TaxID=1618896 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC1_38_17.;"
hypothetical protein
ar4r2_scaffold_1320_16
unknown

Not on your lists

16126..17088
DNA (963bp) protein (321aa)
hypothetical protein
source missing description 14..286 id=983501 bin=RAAC1_SR1 species=RAAC1_SR1 genus=RAAC1_SR1 taxon_order=RAAC1_SR1 taxon_class=RAAC1_SR1 phylum=SR1 tax=RAAC1_SR1 organism_group=SR1 rbh
ar4r2_scaffold_1320_17
RBG_13_OD1_Falkowbacteria_39_9_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

17254..18993
DNA (1740bp) protein (580aa)
hypothetical protein
comEC; Competence protein ComEC; K02238 competence protein ComEC id=983507 bin=RAAC1_SR1 species=RAAC1_SR1 genus=RAAC1_SR1 taxon_order=RAAC1_SR1 taxon_class=RAAC1_SR1 phylum=SR1 tax=RAAC1_SR1 organism_group=SR1
Tax=RBG_13_OD1_Falkowbacteria_39_9_curated
ar4r2_scaffold_1320_18

Not on your lists

20015..23425
DNA (3411bp) protein (1137aa)
hypothetical protein
seg 342..355 id=983509 bin=RAAC1_SR1 species=RAAC1_SR1 genus=RAAC1_SR1 taxon_order=RAAC1_SR1 taxon_class=RAAC1_SR1 phylum=SR1 tax=RAAC1_SR1 organism_group=SR1 rbh
Uncharacterized protein {ECO:0000313|EMBL:EKD25240.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
ar4r2_scaffold_1320_19
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(23629..24015)
DNA (387bp) protein (129aa)
3-phosphoshikimate 1-carboxyvinyltransferase; K00800 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] id=5094054 bin=PER_GWF2_33_10 species=PER_GWF2_33_10 genus=PER_GWF2_33_10 taxon_order=PER_GWF2_33_10 taxon_class=PER_GWF2_33_10 phylum=PER tax=PER_GWF2_33_10 organism_group=PER (Peregrinibacteria) organism_desc=No RuBisCO in this genome
3-phosphoshikimate 1-carboxyvinyltransferase, 3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000313|EMBL:KKP40168.1}; EC=2.5.1.19 {ECO:0000313|EMBL:KKP40168.1};; TaxID=1619065 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_33_10.;"
hypothetical protein
ar4r2_scaffold_1320_20

Not on your lists

comp(24024..24743)
DNA (720bp) protein (240aa)
PROKAR_LIPOPROTEIN id=132056 bin=ACD80 species=ACD80 genus=ACD80 taxon_order=ACD80 taxon_class=ACD80 phylum=SR1 tax=ACD80 organism_group=SR1
Uncharacterized protein {ECO:0000313|EMBL:EKD24740.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
ar4r2_scaffold_1320_21
ACD80, SR1, Bacteria

Not on your lists

comp(24743..25843)
DNA (1101bp) protein (367aa)
seg 30..44 id=132059 bin=ACD80 species=ACD80 genus=ACD80 taxon_order=ACD80 taxon_class=ACD80 phylum=SR1 tax=ACD80 organism_group=SR1 rbh
Tax=ACD80
ar4r2_scaffold_1320_22

Not on your lists

comp(26396..27457)
DNA (1062bp) protein (354aa)
Chaperone protein DnaJ n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DHA9_9EURY id=132079 bin=ACD80 species=Candidatus Micrarchaeum acidiphilum genus=Candidatus Micrarchaeum taxon_order=unknown taxon_class=unknown phylum=Euryarchaeota tax=ACD80 organism_group=SR1 rbh
Chaperone protein DnaJ {ECO:0000256|HAMAP-Rule:MF_01152}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
Chaperone protein DnaJ
ar4r2_scaffold_1320_23
unknown

Not on your lists

comp(27499..27651)
DNA (153bp) protein (51aa)

This feature has no annotations

ar4r2_scaffold_1320_24
unknown

Not on your lists

28049..28393
DNA (345bp) protein (115aa)

This feature has no annotations

ar4r2_scaffold_1320_25
unknown

Not on your lists

28417..28557
DNA (141bp) protein (47aa)

This feature has no annotations

ar4r2_scaffold_1320_26
unknown

Not on your lists

28545..30119
DNA (1575bp) protein (525aa)

This feature has no annotations

ar4r2_scaffold_1320_27
GWC2_CPR2_39_35, CPR2, Bacteria

Not on your lists

comp(30188..30862)
DNA (675bp) protein (225aa)
hypothetical protein n=1 Tax=Leptolyngbya boryana RepID=UPI000360E498
hypothetical protein
Tax=GWC2_CPR2_39_35
ar4r2_scaffold_1320_28

Not on your lists

31122..31457
DNA (336bp) protein (112aa)
coiled-coil 73..94 id=132066 bin=ACD80 species=ACD80 genus=ACD80 taxon_order=ACD80 taxon_class=ACD80 phylum=SR1 tax=ACD80 organism_group=SR1
Uncharacterized protein {ECO:0000313|EMBL:EKD24743.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
ar4r2_scaffold_1320_29
unknown

Not on your lists

31486..33663
DNA (2178bp) protein (726aa)

This feature has no annotations

ar4r2_scaffold_1320_30
Hippea maritima, Hippea, Desulfurellales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33941..34150
DNA (210bp) protein (70aa)
Transposase IS200-family protein n=1 Tax=Hippea maritima (strain ATCC 700847 / DSM 10411 / MH2) RepID=F2LV57_HIPMA
transposase IS200-family protein
Transposase IS200-family protein {ECO:0000313|EMBL:AEA33641.1}; TaxID=760142 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfurellales; Desulfurellaceae; Hippea.;" source="Hippea maritima (strain ATCC 700847 / DSM 10411 / MH2).;"
Displaying 30 items

View Taxonomy