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gwf2_scaffold_1143

Alias: PER_GWF2_39_17_12

Search features with annotation key words

Displaying items 1-30 of 50 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
gwf2_scaffold_1143_1
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

comp(160..531)
DNA (372bp) protein (124aa)
seg Tax=PER_GWF2_39_17
seg (db=Seg db_id=seg from=2 to=17)
transmembrane_regions (db=TMHMM db_id=tmhmm from=29 to=51)
gwf2_scaffold_1143_2
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

comp(543..1439)
DNA (897bp) protein (299aa)
mraW; S-adenosyl-methyltransferase MraW (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase H n=1 Tax=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) RepID=RSMH_DICT6
16S rRNA methyltransferase Tax=PER_GWF2_39_17
TIGR00006: S-adenosyl-methyltransferase Mra (db=HMMTigr db_id=TIGR00006 from=2 to=298 evalue=1.4e-104 interpro_id=IPR002903 interpro_description=S-adenosyl-L-methionine-dependent methyltransferase, MraW GO=Molecular Function: methyltransferase activity (GO:0008168))
gwf2_scaffold_1143_3
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

1775..2257
DNA (483bp) protein (161aa)
Small multidrug export protein n=2 Tax=Methanosarcina mazei RepID=M1QAH8_METMZ
small multi-drug export protein Tax=PER_GWF2_39_17
small multi-drug export protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
gwf2_scaffold_1143_4
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

comp(2314..2865)
DNA (552bp) protein (184aa)
Sua5/YciO/YrdC/YwlC family protein n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IF80_BEII9
Sua5/YciO/YrdC/YwlC family protein; K07566 tRNA threonylcarbamoyladenosine biosynthesis protein Tax=PER_GWF2_39_17
translation factor Sua5
TIGR00057: Sua5/YciO/YrdC/YwlC family prote (db=HMMTigr db_id=TIGR00057 from=1 to=183 evalue=1.2e-36 interpro_id=IPR004388 interpro_description=Sua5/YciO/YrdC/YwlC)
gwf2_scaffold_1143_5
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

comp(2923..3144)
DNA (222bp) protein (74aa)
seg Tax=PER_GWF2_39_17
seg (db=Seg db_id=seg from=9 to=24)
gwf2_scaffold_1143_6
Peregrinibacteria bacterium GW2011_GWE2_39_6, Peregrinibacteria, Bacteria

Not on your lists

3290..4294
DNA (1005bp) protein (335aa)
Glyceraldehyde-3-phosphate dehydrogenase, glyceraldehyde 3-phosphate dehydrogenase {ECO:0000313|EMBL:KKR24953.1}; EC=1.2.1.12 {ECO:0000313|EMBL:KKR24953.1};; TaxID=1619064 species="Bacteria; Peregrini
glyceraldehyde-3-phosphate dehydrogenase (EC:1.2.1.12)
Glyceraldehyde-3-phosphate dehydrogenase, type I n=4 Tax=Thermoanaerobacterium RepID=D9TNA3_THETC rbh
seg (db=Seg db_id=seg from=196 to=202)
gwf2_scaffold_1143_7
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

comp(4305..4646)
DNA (342bp) protein (114aa)
Tax=PER_GWF2_39_17
gwf2_scaffold_1143_8
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

4778..5506
DNA (729bp) protein (243aa)
Transcriptional regulator of heat shock gene n=2 Tax=Saccharobacteria RepID=UPI00016B2634
heat-inducible transcription repressor HrcA; K03705 heat-inducible transcriptional repressor Tax=PER_GWF2_39_17
hypothetical protein
seg (db=Seg db_id=seg from=85 to=99)
gwf2_scaffold_1143_9
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

5534..6166
DNA (633bp) protein (211aa)
Protein GrpE n=2 Tax=Thermoanaerobacterium thermosaccharolyticum RepID=D9TP84_THETC
GrpE protein; K03687 molecular chaperone GrpE Tax=PER_GWF2_39_17
molecular chaperone GrpE (heat shock protein)
seg (db=Seg db_id=seg from=5 to=22)
gwf2_scaffold_1143_10
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

comp(6504..7499)
DNA (996bp) protein (332aa)
S-CspCI protein n=1 Tax=Oxalobacter formigenes OXCC13 RepID=C3XCX0_OXAFO
hypothetical protein Tax=PER_GWF2_39_17
hypothetical protein
(db=HMMPfam db_id=PF01420 from=5 to=136 evalue=2.9e-11 interpro_id=IPR000055 interpro_description=Restriction endonuclease, type I, HsdS GO=Molecular Function: DNA binding (GO:0003677), Biological Process: DNA modification (GO:0006304))
gwf2_scaffold_1143_11
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

comp(7492..7713)
DNA (222bp) protein (74aa)
Tax=PER_GWF2_39_17
gwf2_scaffold_1143_12
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

comp(7703..9562)
DNA (1860bp) protein (620aa)
N-6 DNA Methylase family n=1 Tax=Aciduliprofundum boonei (strain DSM 19572 / T469) RepID=B5IG66_ACIB4 rbh
N-6 DNA methylase Tax=PER_GWF2_39_17
N-6 DNA methylase
seg (db=Seg db_id=seg from=36 to=49)
gwf2_scaffold_1143_13
Peregrinibacteria bacterium GW2011_GWE2_39_6, Peregrinibacteria, Bacteria

Not on your lists

comp(9569..10201)
DNA (633bp) protein (211aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR24946.1}; TaxID=1619064 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWE2_39_6.;"
hypothetical protein
no description (db=Gene3D db_id=G3DSA:2.10.109.10 from=76 to=207 evalue=3.4e-10 interpro_id=IPR011056 interpro_description=Peptidase S24/S26A/S26B/S26C, beta-ribbon domain)
LexA/Signal peptidase (db=superfamily db_id=SSF51306 from=69 to=207 evalue=8.8e-14 interpro_id=IPR015927 interpro_description=Peptidase S24/S26A/S26B/S26C)
gwf2_scaffold_1143_14
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

10334..10624
DNA (291bp) protein (97aa)
Excinuclease ABC, C subunit, N-terminal Tax=PER_GWF2_39_17
(db=HMMPfam db_id=PF01541 from=23 to=91 evalue=3.8e-05 interpro_id=IPR000305 interpro_description=Excinuclease ABC, C subunit, N-terminal GO=Molecular Function: nuclease activity (GO:0004518), Cellular Component: intracellular (GO:0005622), Biological Process: DNA repair (GO:0006281))
COX2_CUA (db=ProfileScan db_id=PS50857 from=1 to=96 evalue=8.581 interpro_id=IPR002429 interpro_description=Cytochrome c oxidase subunit II C-terminal GO=Molecular Function: cytochrome-c oxidase activity (GO:0004129), Molecular Function: copper ion binding (GO:0005507), Cellular Component: membrane (GO:0016020))
gwf2_scaffold_1143_15
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

10886..12808
DNA (1923bp) protein (641aa)
Chaperone protein DnaK n=1 Tax=Desulfurispirillum indicum (strain ATCC BAA-1389 / S5) RepID=E6W4N3_DESIS rbh
chaperone protein DnaK; K04043 molecular chaperone DnaK Tax=PER_GWF2_39_17
chaperone protein DnaK
seg (db=Seg db_id=seg from=177 to=187)
gwf2_scaffold_1143_16
Peregrinibacteria bacterium GW2011_GWE2_39_6, Peregrinibacteria, Bacteria

Not on your lists

12889..14193
DNA (1305bp) protein (435aa)
Seryl-tRNA synthetase, seryl-tRNA synthetase {ECO:0000313|EMBL:KKR24942.1}; EC=6.1.1.11 {ECO:0000313|EMBL:KKR24942.1};; TaxID=1619064 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria
seryl-tRNA synthetase (EC:6.1.1.11)
Serine--tRNA ligase n=1 Tax=Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 / JCM 10125 / NBRC 14880 / R51) RepID=D6Y273_THEBD rbh
coiled-coil (db=Coil db_id=coil from=31 to=52 evalue=NA)
gwf2_scaffold_1143_17
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

comp(14177..14827)
DNA (651bp) protein (217aa)
seg Tax=PER_GWF2_39_17
seg (db=Seg db_id=seg from=102 to=114)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=20 evalue=5.0)
gwf2_scaffold_1143_18
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

14987..15730
DNA (744bp) protein (248aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR07775.1}; TaxID=1619067 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_39_17.;"
Xylose isomerase-like (db=superfamily db_id=SSF51658 from=5 to=246 evalue=1.5e-21 interpro_id=IPR013022 interpro_description=Xylose isomerase-like, TIM barrel domain)
no description (db=Gene3D db_id=G3DSA:3.20.20.150 from=11 to=218 evalue=2.5e-10 interpro_id=IPR013022 interpro_description=Xylose isomerase-like, TIM barrel domain)
(db=HMMPfam db_id=PF01261 from=21 to=183 evalue=4.1e-10 interpro_id=IPR012307 interpro_description=Xylose isomerase, TIM barrel domain)
gwf2_scaffold_1143_19
Peregrinibacteria bacterium GW2011_GWE2_39_6, Peregrinibacteria, Bacteria

Not on your lists

16136..19699
DNA (3564bp) protein (1188aa)
DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta {ECO:0000313|EMBL:KKR25910.1}; EC=2.7.7.6 {ECO:0000313|EMBL:KKR25910.1};; TaxID=1619064 species="Bacteria; Peregrinib
DNA-directed RNA polymerase subunit beta n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C2J8_SPHTD rbh
DNA-directed RNA polymerase subunit beta
seg (db=Seg db_id=seg from=4 to=29)
gwf2_scaffold_1143_20
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

19769..20284
DNA (516bp) protein (172aa)
Single-stranded DNA-binding protein n=2 Tax=Methylotenera RepID=D7DNA2_METS0
single-strand-binding protein; K03111 single-strand DNA-binding protein Tax=PER_GWF2_39_17
hypothetical protein
Nucleic acid-binding proteins (db=superfamily db_id=SSF50249 from=2 to=147 evalue=1.7e-41 interpro_id=IPR016027 interpro_description=Nucleic acid-binding, OB-fold-like)
gwf2_scaffold_1143_21
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

20330..24154
DNA (3825bp) protein (1275aa)
DNA-directed RNA polymerase subunit beta', DNA-directed RNA polymerase subunit beta {ECO:0000313|EMBL:KKR07778.1}; EC=2.7.7.6 {ECO:0000313|EMBL:KKR07778.1};; TaxID=1619067 species="Bacteria; Peregrini
rpoC; DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' n=8 Tax=Dehalococcoides mccartyi RepID=RPOC_DEHSC rbh
rpoC_TIGR: DNA-directed RNA polymerase, bet (db=HMMTigr db_id=TIGR02386 from=13 to=1261 evalue=0.0 interpro_id=IPR012754 interpro_description=DNA-directed RNA polymerase, subunit beta-prime GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA-directed RNA polymerase activity (GO:0003899), Biological Process: transcription, DNA-dependent (GO:0006351))
gwf2_scaffold_1143_22
Peregrinibacteria bacterium GW2011_GWE2_39_6, Peregrinibacteria, Bacteria

Not on your lists


24242..24658
DNA (417bp) protein (139aa)
30S ribosomal protein S12 n=1 Tax=Mesoplasma florum (strain ATCC 33453 / NBRC 100688 / NCTC 11704 / L1) RepID=RS12_MESFL
30S ribosomal protein S12, small subunit ribosomal protein S12 {ECO:0000313|EMBL:KKR25907.1}; TaxID=1619064 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWE2_39_6
rpsL; 30S ribosomal protein S12
RIBOSOMAL_S12 (db=PatternScan db_id=PS00055 from=56 to=63 evalue=0.0 interpro_id=IPR006032 interpro_description=Ribosomal protein S12/S23 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
gwf2_scaffold_1143_23
Peregrinibacteria bacterium GW2011_GWE2_39_6, Peregrinibacteria, Bacteria

Not on your lists


24702..25160
DNA (459bp) protein (153aa)
30S ribosomal protein S7 n=1 Tax=Alkalilimnicola ehrlichei (strain MLHE-1) RepID=RS7_ALHEH
30S ribosomal protein S7, small subunit ribosomal protein S7 {ECO:0000313|EMBL:KKR25906.1}; TaxID=1619064 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWE2_39_6.;
30S ribosomal protein S7
RIBOSOMAL_S7 (db=PatternScan db_id=PS00052 from=15 to=41 evalue=0.0 interpro_id=IPR020606 interpro_description=Ribosomal protein S7, conserved site GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412))
gwf2_scaffold_1143_24
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

25147..25620
DNA (474bp) protein (158aa)
Tax=PER_GWF2_39_17
gwf2_scaffold_1143_25
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

25685..26218
DNA (534bp) protein (178aa)
seg Tax=PER_GWF2_39_17
seg (db=Seg db_id=seg from=2 to=21)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
coiled-coil (db=Coil db_id=coil from=82 to=103 evalue=NA)
gwf2_scaffold_1143_26
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

26363..28468
DNA (2106bp) protein (702aa)
Elongation factor G n=1 Tax=Leptonema illini DSM 21528 RepID=H2CAM3_9LEPT rbh
translation elongation factor G; K02355 elongation factor G Tax=PER_GWF2_39_17
translation elongation factor G
seg (db=Seg db_id=seg from=496 to=501)
gwf2_scaffold_1143_27
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists

28629..29822
DNA (1194bp) protein (398aa)
Elongation factor Tu n=1 Tax=Desulfurispirillum indicum (strain ATCC BAA-1389 / S5) RepID=E6W252_DESIS rbh
translation elongation factor Tu; K02358 elongation factor Tu Tax=PER_GWF2_39_17
translation elongation factor Tu
seg (db=Seg db_id=seg from=23 to=37)
gwf2_scaffold_1143_28
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists


30175..30516
DNA (342bp) protein (114aa)
30S ribosomal protein S10 n=1 Tax=Dehalogenimonas lykanthroporepellens (strain ATCC BAA-1523 / JCM 15061 / BL-DC-9) RepID=D8K1C1_DEHLB
30S ribosomal protein S10, small subunit ribosomal protein S10 {ECO:0000313|EMBL:KKR07785.1}; TaxID=1619067 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_39_1
30S ribosomal protein S10
RIBOSOMAL_S10 (db=PatternScan db_id=PS00361 from=37 to=52 evalue=0.0 interpro_id=IPR018268 interpro_description=Ribosomal protein S10, conserved site GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
gwf2_scaffold_1143_29
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists


30682..31269
DNA (588bp) protein (196aa)
50S ribosomal protein L3 n=13 Tax=Thermoanaerobacteraceae RepID=RL3_THEP3
rplC; 50S ribosomal protein L3; K02906 large subunit ribosomal protein L3 Tax=PER_GWF2_39_17
rplC; 50S ribosomal protein L3
seg (db=Seg db_id=seg from=115 to=129)
gwf2_scaffold_1143_30
PER_GWF2_39_17, Peregrinibacteria, Bacteria

Not on your lists


31285..31929
DNA (645bp) protein (215aa)
50S ribosomal protein L4 n=3 Tax=Parvimonas RepID=A8SND4_9FIRM
50S ribosomal protein L4, large subunit ribosomal protein L4 {ECO:0000313|EMBL:KKR07787.1}; TaxID=1619067 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWF2_39_17.
50S ribosomal protein L4
seg (db=Seg db_id=seg from=52 to=61)
Displaying items 1-30 of 50 in total

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