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gwe1_scaffold_983

Alias: GWE1_WS6_33_547_10

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Displaying 28 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
gwe1_scaffold_983_1

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comp(3..722)
DNA (720bp) protein (240aa)
Translation initiation factor IF-2 n=1 Tax=Peptoniphilus indolicus ATCC 29427 RepID=G4D5P5_9FIRM
Translation initiation factor IF-2 {ECO:0000313|EMBL:KKP55152.1}; Flags: Fragment;; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6
translation initiation factor IF-2
seg (db=Seg db_id=seg from=88 to=99)
gwe1_scaffold_983_2
WS6_GWC1_33_20, WS6, Bacteria

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comp(744..1964)
DNA (1221bp) protein (407aa)
Transcription termination factor NusA n=1 Tax=Peptoniphilus harei ACS-146-V-Sch2b RepID=E4KYI3_9FIRM rbh
NusA antitermination factor, N utilization substance protein A {ECO:0000313|EMBL:KKP43650.1}; TaxID=1619089 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011
NusA antitermination factor
no description (db=HMMSmart db_id=SM00322 from=309 to=378 evalue=0.00088 interpro_id=IPR004087 interpro_description=K Homology GO=Molecular Function: RNA binding (GO:0003723))
gwe1_scaffold_983_3
GWD1_WS6_35_594, WS6, Bacteria

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comp(2091..3176)
DNA (1086bp) protein (362aa)
Chaperone protein DnaJ n=1 Tax=Aerococcus urinae (strain ACS-120-V-Col10a) RepID=F2I4Z3_AERUA rbh
Chaperone protein DnaJ {ECO:0000313|EMBL:KKP81932.1}; TaxID=1619092 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWD1_35_594.;"
dnaJ; chaperone protein DnaJ
DNAJ_1 (db=PatternScan db_id=PS00636 from=46 to=65 evalue=0.0 interpro_id=IPR018253 interpro_description=Heat shock protein DnaJ, conserved site GO=Molecular Function: heat shock protein binding (GO:0031072))
gwe1_scaffold_983_4
GWD1_WS6_35_594, WS6, Bacteria

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3252..4046
DNA (795bp) protein (265aa)
SrtC n=2 Tax=Lactococcus garvieae RepID=A4GX15_9LACT
SrtC {ECO:0000313|EMBL:KKP81931.1}; TaxID=1619092 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWD1_35_594.;"
sortase family protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=43)
gwe1_scaffold_983_5
GWD1_WS6_35_594, WS6, Bacteria

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4065..5381
DNA (1317bp) protein (439aa)
Putative sugar ABC transporter, periplasmic component n=1 Tax=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) RepID=C1D230_DEIDV
Uncharacterized protein {ECO:0000313|EMBL:KKP81930.1}; TaxID=1619092 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWD1_35_594.;"
family 1 extracellular solute-binding protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=31)
gwe1_scaffold_983_6
GWD1_WS6_35_594, WS6, Bacteria

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5400..7259
DNA (1860bp) protein (620aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP81929.1}; TaxID=1619092 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWD1_35_594.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
seg (db=Seg db_id=seg from=16 to=34)
(db=HMMPfam db_id=PF10342 from=273 to=354 evalue=1.4e-06 interpro_id=IPR018466 interpro_description=Cell wall beta-glucan synthesis)
gwe1_scaffold_983_7
WS6_GWF1_33_233, WS6, Bacteria

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7296..9044
DNA (1749bp) protein (583aa)
Alanine-tRNA ligase, alanyl-tRNA synthetase {ECO:0000313|EMBL:KKP45384.1}; EC=6.1.1.7 {ECO:0000313|EMBL:KKP45384.1};; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate divis
alaS2; alanine--tRNA ligase (EC:6.1.1.7)
Alanine--tRNA ligase n=1 Tax=Treponema phagedenis F0421 RepID=E7NSZ3_TREPH rbh
seg (db=Seg db_id=seg from=295 to=306)
gwe1_scaffold_983_8

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9046..9498
DNA (453bp) protein (151aa)
Putative Holliday junction resolvase n=1 Tax=Halanaerobium saccharolyticum subsp. saccharolyticum DSM 6643 RepID=M5E1G0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KKP55159.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
Holliday junction resolvase-like protein
RNAse_H_YqgF: RNAse H-fold protein YqgF (db=HMMTigr db_id=TIGR00250 from=8 to=140 evalue=1.7e-16 interpro_id=IPR005227 interpro_description=Resolvase, holliday junction-type, YqgF-like GO=Cellular Component: cytoplasm (GO:0005737), Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310), Biological Process: response to DNA damage stimulus (GO:0006974), Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788))
gwe1_scaffold_983_9
RIFOXYB1_FULL_WS6_33_15_curated, Dojkabacteria, Bacteria

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9482..10480
DNA (999bp) protein (333aa)
UPI000288FE55 related cluster n=1 Tax=unknown RepID=UPI000288FE55
hypothetical protein; K07082 UPF0755 protein Tax=RIFOXYB1_FULL_WS6_33_15_curated
YceG family protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=22)
gwe1_scaffold_983_10
WS6_GWF1_33_233, WS6, Bacteria

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10499..11932
DNA (1434bp) protein (478aa)
Transcriptional regulator LytR n=2 Tax=Brevibacillus laterosporus RepID=F7U2Q2_BRELA
Cell envelope-related transcriptional attenuator {ECO:0000313|EMBL:KKP45381.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;
cell envelope-related transcriptional attenuator
transmembrane_regions (db=TMHMM db_id=tmhmm from=32 to=54)
gwe1_scaffold_983_11
WS6_GWF1_33_233, WS6, Bacteria

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11937..12863
DNA (927bp) protein (309aa)
Polymerase III subunit delta, DNA polymerase III subunit delta protein {ECO:0000313|EMBL:KKP45380.1}; EC=2.7.7.7 {ECO:0000313|EMBL:KKP45380.1};; TaxID=1619096 species="Bacteria; candidate division WS6
YqeN n=14 Tax=Bacillus RepID=A7Z6X0_BACA2
holA; DNA polymerase III subunit delta
seg (db=Seg db_id=seg from=40 to=54)
gwe1_scaffold_983_12
WS6_GWF1_33_233, WS6, Bacteria

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12947..14698
DNA (1752bp) protein (584aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP45379.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
B_ant_repeat: conserved repeat domain (db=HMMTigr db_id=TIGR01451 from=363 to=415 evalue=0.0013 interpro_id=IPR001434 interpro_description=Domain of unknown function DUF11 GO=Cellular Component: extrachromosomal circular DNA (GO:0005727))
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
seg (db=Seg db_id=seg from=14 to=31)
gwe1_scaffold_983_13
WS6_GWF1_33_233, WS6, Bacteria

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comp(14682..15095)
DNA (414bp) protein (138aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP45378.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=30)
seg (db=Seg db_id=seg from=13 to=32)
Purple acid phosphatase, N-terminal domain (db=superfamily db_id=SSF49363 from=22 to=122 evalue=5.3e-07 interpro_id=IPR008963 interpro_description=Purple acid phosphatase-like, N-terminal GO=Molecular Function: acid phosphatase activity (GO:0003993), Molecular Function: metal ion binding (GO:0046872))
gwe1_scaffold_983_14
RIFOXYB1_FULL_WS6_33_15_curated, Dojkabacteria, Bacteria

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comp(15079..15318)
DNA (240bp) protein (80aa)
Cadherin-like Tax=RIFOXYB1_FULL_WS6_33_15_curated
Cadherin-like (db=superfamily db_id=SSF49313 from=5 to=78 evalue=7.2e-08 interpro_id=IPR015919 interpro_description=Cadherin-like GO=Molecular Function: calcium ion binding (GO:0005509), Cellular Component: membrane (GO:0016020))
gwe1_scaffold_983_15

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15542..15838
DNA (297bp) protein (99aa)
30S ribosomal protein S20 n=1 Tax=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) RepID=RS20_HALOH
30S ribosomal protein S20 {ECO:0000313|EMBL:KKP55166.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
30S ribosomal protein S20
Ribosomal protein S20 (db=superfamily db_id=SSF46992 from=3 to=86 evalue=1.0e-16 interpro_id=IPR002583 interpro_description=Ribosomal protein S20 GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
gwe1_scaffold_983_16
GWD1_WS6_35_594, WS6, Bacteria

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15810..16358
DNA (549bp) protein (183aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP82053.1}; TaxID=1619092 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWD1_35_594.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
gwe1_scaffold_983_17

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16360..16914
DNA (555bp) protein (185aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP55168.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
seg (db=Seg db_id=seg from=16 to=29)
gwe1_scaffold_983_18

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16966..18789
DNA (1824bp) protein (608aa)
Elongation factor 4 n=1 Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9S2N8_THEOJ rbh
Elongation factor 4 {ECO:0000313|EMBL:KKP55169.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
GTP-binding protein LepA
EFACTOR_GTP (db=PatternScan db_id=PS00301 from=48 to=63 evalue=0.0 interpro_id=IPR000795 interpro_description=Protein synthesis factor, GTP-binding GO=Molecular Function: GTPase activity (GO:0003924), Molecular Function: GTP binding (GO:0005525))
gwe1_scaffold_983_19
WS6_GWF1_33_233, WS6, Bacteria

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18789..19862
DNA (1074bp) protein (358aa)
DNA replication and repair protein RecF n=1 Tax=Halobacteroides halobius (strain ATCC 35273 / DSM 5150 / MD-1) RepID=L0K426_HALHC
Recombination protein F, DNA replication and repair protein RecF {ECO:0000313|EMBL:KKP45372.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW20
recF protein
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=1 to=322 evalue=2.3e-25)
gwe1_scaffold_983_20

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19914..20738
DNA (825bp) protein (275aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP55171.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=43)
seg (db=Seg db_id=seg from=14 to=26)
gwe1_scaffold_983_21
WS6_GWF1_33_233, WS6, Bacteria

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20738..21400
DNA (663bp) protein (221aa)
Putative uncharacterized protein n=2 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KS15_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KKP45370.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
hypothetical protein
coiled-coil (db=Coil db_id=coil from=143 to=171 evalue=NA)
gwe1_scaffold_983_22
WS6_GWF1_33_233, WS6, Bacteria

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21417..23753
DNA (2337bp) protein (779aa)
Type IV secretory pathway VirB4 components-like protein n=3 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KS14_9BACT rbh
Type IV secretory pathway VirB4 protein-like protein {ECO:0000313|EMBL:KKP45369.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_2
hypothetical protein
coiled-coil (db=Coil db_id=coil from=691 to=722 evalue=NA)
gwe1_scaffold_983_23
WS6_GWF1_33_233, WS6, Bacteria

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23728..23919
DNA (192bp) protein (64aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP45368.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
gwe1_scaffold_983_24
WS6_GWC1_33_20, WS6, Bacteria

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comp(23916..25064)
DNA (1149bp) protein (383aa)
ATP-dependent protease La, ATP-dependent Lon protease {ECO:0000313|EMBL:KKP43672.1}; EC=3.4.21.53 {ECO:0000313|EMBL:KKP43672.1};; TaxID=1619089 species="Bacteria; candidate division WS6.;" source="can
Lon protease n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CBY4_THET1
hypothetical protein
coiled-coil (db=Coil db_id=coil from=17 to=38 evalue=NA)
gwe1_scaffold_983_25
WS6_GWF1_33_233, WS6, Bacteria

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comp(25106..26395)
DNA (1290bp) protein (430aa)
SufS subfamily cysteine desulfurase, cysteine desulfurase / selenocysteine lyase {ECO:0000313|EMBL:KKP45366.1}; EC=2.8.1.7 {ECO:0000313|EMBL:KKP45366.1};; TaxID=1619096 species="Bacteria; candidate di
Cysteine desulfurase n=2 Tax=uncultured candidate division OP1 bacterium RepID=H5SHY4_9BACT rbh
SufS subfamily cysteine desulfurase
AA_TRANSFER_CLASS_5 (db=PatternScan db_id=PS00595 from=217 to=236 evalue=0.0 interpro_id=IPR020578 interpro_description=Aminotransferase class-V pyridoxal-phosphate binding site)
gwe1_scaffold_983_26

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comp(26413..26973)
DNA (561bp) protein (187aa)
dcd; deoxycytidine triphosphate deaminase (EC:3.5.4.13)
Deoxycytidine triphosphate deaminase n=3 Tax=Corynebacterium RepID=DCD_CORJK
Deoxycytidine triphosphate deaminase {ECO:0000313|EMBL:KKP55177.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
(db=HMMPfam db_id=PF00692 from=72 to=174 evalue=2.1e-09 interpro_id=IPR008180 interpro_description=DeoxyUTP pyrophosphatase GO=Molecular Function: hydrolase activity (GO:0016787), Biological Process: dUTP metabolic process (GO:0046080))
gwe1_scaffold_983_27

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comp(26991..28586)
DNA (1596bp) protein (532aa)
Thymidylate synthase complementing protein n=1 Tax=Oscillatoriales cyanobacterium JSC-12 RepID=K8GNT5_9CYAN rbh
Thymidylate synthase complementing protein {ECO:0000313|EMBL:KKP55178.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
coiled-coil (db=Coil db_id=coil from=413 to=434 evalue=NA)
seg (db=Seg db_id=seg from=344 to=349)
gwe1_scaffold_983_28

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comp(28615..28824)
DNA (210bp) protein (70aa)
glyA; glycine hydroxymethyltransferase (EC:2.1.2.1)
Serine hydroxymethyltransferase n=1 Tax=Stackebrandtia nassauensis (strain DSM 44728 / NRRL B-16338 / NBRC 102104 / LLR-40K-21) RepID=D3Q2Y0_STANL
Serine hydroxymethyltransferase {ECO:0000313|EMBL:KKP55179.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
coiled-coil (db=Coil db_id=coil from=41 to=62 evalue=NA)
Displaying 28 items

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