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gwf1_scaffold_2145

Alias: WS6_GWF1_33_233_16

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
gwf1_scaffold_2145_1
unknown

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comp(3..62)
DNA (60bp) protein (20aa)

This feature has no annotations

gwf1_scaffold_2145_2
WS6_GWF1_33_233, WS6, Bacteria

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217..495
DNA (279bp) protein (93aa)
Lysyl-tRNA synthetase, lysyl-tRNA synthetase, class II {ECO:0000313|EMBL:KKP44627.1}; EC=6.1.1.6 {ECO:0000313|EMBL:KKP44627.1};; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="cand
Lysine--tRNA ligase n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CDC5_THET1
hypothetical protein
(db=HMMPfam db_id=PF01336 from=58 to=89 evalue=1.2e-05 interpro_id=IPR004365 interpro_description=Nucleic acid binding, OB-fold, tRNA/helicase-type GO=Molecular Function: nucleic acid binding (GO:0003676))
gwf1_scaffold_2145_3

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665..1624
DNA (960bp) protein (320aa)
lysyl-tRNA synthetase n=1 Tax=candidate division TM7 single-cell isolate TM7a RepID=UPI00017427C9 rbh
Lysyl-tRNA synthetase {ECO:0000313|EMBL:KKP54534.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
hypothetical protein
no description (db=Gene3D db_id=G3DSA:3.30.930.10 from=1 to=297 evalue=3.7e-65)
gwf1_scaffold_2145_4

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1656..2003
DNA (348bp) protein (116aa)
Putative uncharacterized protein n=1 Tax=uncultured candidate division WWE3 bacterium EJ0ADIGA11YD11 RepID=B0KVC1_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KKP54533.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
seg (db=Seg db_id=seg from=12 to=23)
coiled-coil (db=Coil db_id=coil from=1 to=22 evalue=NA)
gwf1_scaffold_2145_5
RIFOXYB1_FULL_WS6_33_15_curated, Dojkabacteria, Bacteria

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comp(1966..2994)
DNA (1029bp) protein (343aa)
RecJ-like phosphoesterase n=396 Tax=Staphylococcus aureus RepID=A6QHN8_STAAE
3'-to-5' oligoribonuclease A Tax=RIFOXYB1_FULL_WS6_33_15_curated
3'-to-5' oligoribonuclease A
seg (db=Seg db_id=seg from=203 to=212)
gwf1_scaffold_2145_6
WS6_GWF1_33_233, WS6, Bacteria

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3120..4394
DNA (1275bp) protein (425aa)
Seryl-tRNA synthetase, seryl-tRNA synthetase {ECO:0000313|EMBL:KKP44631.1}; EC=6.1.1.11 {ECO:0000313|EMBL:KKP44631.1};; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate div
serS2; serine--tRNA ligase 2 (EC:6.1.1.11)
Serine--tRNA ligase n=1 Tax=Clostridium leptum DSM 753 RepID=A7VRU5_9CLOT rbh
seg (db=Seg db_id=seg from=4 to=16)
gwf1_scaffold_2145_7
WS6_GWF1_33_233, WS6, Bacteria

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4400..4963
DNA (564bp) protein (188aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP44632.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
LigT-like (db=superfamily db_id=SSF55144 from=1 to=135 evalue=2.8e-10 interpro_id=IPR009097 interpro_description=RNA ligase/cyclic nucleotide phosphodiesterase GO=Molecular Function: catalytic activity (GO:0003824), Cellular Component: intracellular (GO:0005622), Biological Process: RNA metabolic process (GO:0016070))
gwf1_scaffold_2145_8
WS6_GWF1_33_233, WS6, Bacteria

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comp(4927..5730)
DNA (804bp) protein (268aa)
tRNA delta(2)-isopentenylpyrophosphate transferase, tRNA dimethylallyltransferase {ECO:0000313|EMBL:KKP44633.1}; EC=2.5.1.75 {ECO:0000313|EMBL:KKP44633.1};; TaxID=1619096 species="Bacteria; candidate
tRNA isopentenyltransferase (miaA) (EC:2.5.1.75)
tRNA dimethylallyltransferase n=1 Tax=Clostridium sp. L2-50 RepID=A7VBA5_9CLOT
miaA: tRNA delta(2)-isopentenylpyrophosphate (db=HMMTigr db_id=TIGR00174 from=8 to=255 evalue=1.8e-30 interpro_id=IPR018022 interpro_description=tRNA delta(2)-isopentenylpyrophosphate transferase GO=Biological Process: tRNA processing (GO:0008033))
gwf1_scaffold_2145_9
WS6_GWF1_33_233, WS6, Bacteria

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comp(5727..6236)
DNA (510bp) protein (170aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP44634.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
seg (db=Seg db_id=seg from=22 to=36)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=38)
gwf1_scaffold_2145_10

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comp(6233..7486)
DNA (1254bp) protein (418aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP54527.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
seg (db=Seg db_id=seg from=20 to=42)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
gwf1_scaffold_2145_11
WS6_GWF1_33_233, WS6, Bacteria

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comp(7491..8063)
DNA (573bp) protein (191aa)
Putative uncharacterized protein n=1 Tax=uncultured archaeon RepID=D1J9G3_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:KKP44636.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
Transcriptional regulator
coiled-coil (db=Coil db_id=coil from=32 to=53 evalue=NA)
gwf1_scaffold_2145_12

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comp(8113..9378)
DNA (1266bp) protein (422aa)
Putative uncharacterized protein n=1 Tax=sediment metagenome RepID=D9PI67_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:KKP54525.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=43 to=65)
gwf1_scaffold_2145_13
WS6_GWF1_33_233, WS6, Bacteria

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9508..10500
DNA (993bp) protein (331aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP44638.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
seg (db=Seg db_id=seg from=2 to=16)
gwf1_scaffold_2145_14

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10512..11093
DNA (582bp) protein (194aa)
Metal dependent phosphohydrolase n=5 Tax=Thermotoga RepID=B1LB67_THESQ
Metal dependent phosphohydrolase {ECO:0000313|EMBL:KKP54523.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
metal dependent phosphohydrolase
seg (db=Seg db_id=seg from=147 to=152)
gwf1_scaffold_2145_15
RIFOXYB1_FULL_WS6_33_15_curated, Dojkabacteria, Bacteria

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11144..11620
DNA (477bp) protein (159aa)
seg Tax=RIFOXYB1_FULL_WS6_33_15_curated
seg (db=Seg db_id=seg from=32 to=53)
transmembrane_regions (db=TMHMM db_id=tmhmm from=29 to=51)
gwf1_scaffold_2145_16
RIFOXYB1_FULL_WS6_33_15_curated, Dojkabacteria, Bacteria

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11732..17941
DNA (6210bp) protein (2070aa)
Fibronectin type III domain protein n=1 Tax=Cellvibrio japonicus (strain Ueda107) RepID=B3PEN7_CELJU
hypothetical protein Tax=RIFOXYB1_FULL_WS6_33_15_curated
hypothetical protein
seg (db=Seg db_id=seg from=140 to=164)
gwf1_scaffold_2145_17

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17961..21194
DNA (3234bp) protein (1078aa)
Putative uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XP38_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KKP54859.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
hypothetical protein
seg (db=Seg db_id=seg from=8 to=22)
gwf1_scaffold_2145_18

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21438..21818
DNA (381bp) protein (127aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP54860.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
gwf1_scaffold_2145_19

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21961..22164
DNA (204bp) protein (68aa)
4Fe-4S ferredoxin, iron-sulfur binding protein n=1 Tax=Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON) RepID=F4A0R9_MAHA5
4Fe-4S ferredoxin, iron-sulfur binding protein {ECO:0000313|EMBL:KKP54861.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
4Fe-4S ferredoxin
4FE4S_FER_1 (db=PatternScan db_id=PS00198 from=10 to=21 evalue=0.0 interpro_id=IPR017900 interpro_description=4Fe-4S ferredoxin, iron-sulphur binding, conserved site GO=Molecular Function: electron carrier activity (GO:0009055), Molecular Function: iron-sulfur cluster binding (GO:0051536))
gwf1_scaffold_2145_20

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22168..22758
DNA (591bp) protein (197aa)
UPI00029B55F0 related cluster n=1 Tax=unknown RepID=UPI00029B55F0
Phosphoesterase (MutT family)-like protein {ECO:0000313|EMBL:KKP54862.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
Phosphoesterase MutT/NUDIX family
Nudix (db=superfamily db_id=SSF55811 from=29 to=196 evalue=5.5e-07 interpro_id=IPR015797 interpro_description=NUDIX hydrolase domain-like GO=Molecular Function: hydrolase activity (GO:0016787))
gwf1_scaffold_2145_21
WS6_GWF1_33_233, WS6, Bacteria

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22763..23146
DNA (384bp) protein (128aa)
Hit-like protein involved in cell-cycle regulation n=1 Tax=Salimicrobium sp. MJ3 RepID=K2FL56_9BACI
HIT-family protein, Hit-like protein involved in cell-cycle regulation {ECO:0000313|EMBL:KKP44646.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacteriu
histidine triad (HIT) protein
HIT_1 (db=PatternScan db_id=PS00892 from=86 to=104 evalue=0.0 interpro_id=IPR019808 interpro_description=Histidine triad, conserved site)
gwf1_scaffold_2145_22
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

comp(23123..23614)
DNA (492bp) protein (164aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP44647.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
seg (db=Seg db_id=seg from=81 to=97)
PHOSPHOLIPASE-RELATED (db=HMMPanther db_id=PTHR11614 from=34 to=85 evalue=0.00067)
alpha/beta-Hydrolases (db=superfamily db_id=SSF53474 from=24 to=161 evalue=2.2e-23)
gwf1_scaffold_2145_23
WS6_GWF1_33_233, WS6, Bacteria

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23887..24687
DNA (801bp) protein (267aa)
DSBA oxidoreductase n=1 Tax=Nitrosopumilus maritimus (strain SCM1) RepID=A9A1N9_NITMS
DSBA oxidoreductase {ECO:0000313|EMBL:KKP44648.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
DSBA oxidoreductase
seg (db=Seg db_id=seg from=5 to=27)
gwf1_scaffold_2145_24

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comp(24747..25859)
DNA (1113bp) protein (371aa)
Uncharacterized protein n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C528_SPHTD
Uncharacterized protein {ECO:0000313|EMBL:KKP54866.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
hypothetical protein
seg (db=Seg db_id=seg from=9 to=22)
gwf1_scaffold_2145_25
GWD1_WS6_35_594, WS6, Bacteria

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25950..26804
DNA (855bp) protein (285aa)
Glycosyl transferase family 2 n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4C254_SPHS2
Glycosyl transferase family 2 {ECO:0000313|EMBL:KKP81823.1}; TaxID=1619092 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWD1_35_594.;"
family 2 glycosyl transferase
transmembrane_regions (db=TMHMM db_id=tmhmm from=242 to=264)
gwf1_scaffold_2145_26

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26797..27570
DNA (774bp) protein (258aa)
Polysaccharide ABC superfamily ATP binding cassette transporter permease n=1 Tax=Enterococcus italicus DSM 15952 RepID=E6LFG5_9ENTE
Polysaccharide ABC superfamily ATP binding cassette transporter permease {ECO:0000313|EMBL:KKP54868.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacter
polysaccharide permease
seg (db=Seg db_id=seg from=112 to=129)
gwf1_scaffold_2145_27
WS6_GWF1_33_233, WS6, Bacteria

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27572..28303
DNA (732bp) protein (244aa)
Putative polysaccharide ABC transporter n=1 Tax=Streptococcus suis R61 RepID=G5L0N9_STRSU
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KKP44652.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
ATP-binding protein ABC transporter system for polysaccharides
ABC_TRANSPORTER_1 (db=PatternScan db_id=PS00211 from=150 to=164 evalue=0.0 interpro_id=IPR017871 interpro_description=ABC transporter, conserved site GO=Molecular Function: ATP binding (GO:0005524), Molecular Function: ATPase activity (GO:0016887))
gwf1_scaffold_2145_28
WS6_GWF1_33_233, WS6, Bacteria

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28309..29508
DNA (1200bp) protein (400aa)
Glycosyl transferase family 2 n=1 Tax=Archaeoglobus profundus (strain DSM 5631 / JCM 9629 / NBRC 100127 / Av18) RepID=D2RDR5_ARCPA
Family 2 glycosyl transferase {ECO:0000313|EMBL:KKP44653.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
family 2 glycosyl transferase
(db=HMMPfam db_id=PF00535 from=90 to=221 evalue=1.3e-21 interpro_id=IPR001173 interpro_description=Glycosyl transferase, family 2)
gwf1_scaffold_2145_29

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29604..29897
DNA (294bp) protein (98aa)
Glycosyl transferase, group 2 family protein n=1 Tax=Methanosaeta concilii (strain ATCC 5969 / DSM 3671 / JCM 10134 / NBRC 103675 / OCM 69 / GP-6) RepID=F4BVH9_METCG
Glycosyl transferase family 2 {ECO:0000313|EMBL:KKP54870.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
glycosyl transferase, group 2 family protein
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=1 to=80 evalue=1.9e-11)
Displaying 29 items

View Taxonomy