ggKbase home page

cg_0.2_sub10_scaffold_172_c

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cg_0.2_sub10_scaffold_172_c_1
R_OD1_48_18, Parcubacteria, Bacteria

Not on your lists

2..1018
DNA (1017bp) protein (339aa)
resolvase domain-containing protein Tax=RIFCSPLOWO2_01_FULL_OD1_48_18_curated
resolvase domain-containing protein id=5094973 bin=PER_GWF2_33_10 species=PER_GWF2_33_10 genus=PER_GWF2_33_10 taxon_order=PER_GWF2_33_10 taxon_class=PER_GWF2_33_10 phylum=PER tax=PER_GWF2_33_10 organism_group=PER (Peregrinibacteria) organism_desc=No RuBisCO in this genome
resolvase domain-containing protein
cg_0.2_sub10_scaffold_172_c_trna_4
unknown

Not on your lists

comp(980..1051)
DNA (72bp)
transferRNA
cg_0.2_sub10_scaffold_172_c_2
CG_CPR12_01, CG_CPR12, Bacteria

Not on your lists

1391..2269
DNA (879bp) protein (293aa)
Tax=CG_CPR12_01
cg_0.2_sub10_scaffold_172_c_3
CG_CPR12_01, CG_CPR12, Bacteria

Not on your lists

comp(2315..3892)
DNA (1578bp) protein (526aa)
putative mannan synthase 4 (EC:2.4.1.-) Tax=CG_CPR12_01
putative mannan synthase 4 (EC:2.4.1.-)
Putative mannan synthase 4 n=1 Tax=Actinoplanes sp. (strain ATCC 31044 / CBS 674.73 / SE50/110) RepID=G8SHT0_ACTS5
cg_0.2_sub10_scaffold_172_c_4
CG_CPR12_01, CG_CPR12, Bacteria

Not on your lists

4198..4500
DNA (303bp) protein (101aa)
RNA-binding proteins (RRM domain) Tax=CG_CPR12_01
RNA-binding proteins (RRM domain) id=5802739 bin=PER_GWA2_38_35 species=PER_GWC2_39_15 genus=PER_GWC2_39_15 taxon_order=PER_GWC2_39_15 taxon_class=PER_GWC2_39_15 phylum=PER tax=PER_GWA2_38_35 organism_group=PER (Peregrinibacteria) organism_desc=This is the curated version (7 contigs can be represented as 5 scaffolds)
RNA-binding proteins (RRM domain)
cg_0.2_sub10_scaffold_172_c_5
CG_CPR12_01, CG_CPR12, Bacteria

Not on your lists

4736..5002
DNA (267bp) protein (89aa)
Tax=CG_CPR12_01
cg_0.2_sub10_scaffold_172_c_6
CG_CPR12_01, CG_CPR12, Bacteria

Not on your lists

5170..5769
DNA (600bp) protein (200aa)
hypothetical protein Tax=CG_CPR12_01
DedA family protein id=5097723 bin=PER_GWF2_43_18 species=PER_GWF2_42_17 genus=PER_GWF2_42_17 taxon_order=PER_GWF2_42_17 taxon_class=PER_GWF2_42_17 phylum=PER tax=PER_GWF2_43_18 organism_group=PER (Peregrinibacteria)
hypothetical protein
cg_0.2_sub10_scaffold_172_c_7
CG_CPR12_01, CG_CPR12, Bacteria

Not on your lists

5733..7193
DNA (1461bp) protein (487aa)
Glycosyl transferase family 2 n=1 Tax=Thermincola potens (strain JR) RepID=D5XF05_THEPJ
family 2 glycosyl transferase Tax=CG_CPR12_01
glycosyl transferase family 2
cg_0.2_sub10_scaffold_172_c_8
CG_CPR12_01, CG_CPR12, Bacteria

Not on your lists

comp(7421..8527)
DNA (1107bp) protein (369aa)
Putative uncharacterized protein n=1 Tax=Citreicella sp. SE45 RepID=D0DB09_9RHOB id=129682 bin=ACD7 species=Citreicella sp. SE45 genus=Citreicella taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=ACD7 organism_group=OD1-i organism_desc=OD1-i
hypothetical protein Tax=CG_CPR12_01
hypothetical protein
cg_0.2_sub10_scaffold_172_c_9
CG_CPR12_01, CG_CPR12, Bacteria

Not on your lists

comp(8586..9881)
DNA (1296bp) protein (432aa)
RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor Tax=CG_CPR12_01
RNA polymerase sigma factor id=2110492 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
RNA polymerase sigma factor RpoD
cg_0.2_sub10_scaffold_172_c_10
CG_CPR12_01, CG_CPR12, Bacteria

Not on your lists

comp(9966..11753)
DNA (1788bp) protein (596aa)
DNA primase; K02316 DNA primase [EC:2.7.7.-] Tax=CG_CPR12_01
DNA primase id=1930647 bin=GWE2_OD1_46_68 species=GWE2_OD1_46_68 genus=GWE2_OD1_46_68 taxon_order=GWE2_OD1_46_68 taxon_class=GWE2_OD1_46_68 phylum=OD1 tax=GWE2_OD1_46_68 organism_group=OD1 (Parcubacteria)
DNA primase
cg_0.2_sub10_scaffold_172_c_11
unknown

Not on your lists

12039..12242
DNA (204bp) protein (68aa)

This feature has no annotations

cg_0.2_sub10_scaffold_172_c_12
unknown

Not on your lists

12203..12331
DNA (129bp) protein (43aa)

This feature has no annotations

cg_0.2_sub10_scaffold_172_c_13
unknown

Not on your lists

12518..12646
DNA (129bp) protein (43aa)

This feature has no annotations

cg_0.2_sub10_scaffold_172_c_14
CG_CPR12_01, CG_CPR12, Bacteria

Not on your lists

comp(12752..13390)
DNA (639bp) protein (213aa)
hypothetical protein Tax=CG_CPR12_01
hypothetical protein id=5803644 bin=OD1_GWC2_34_28 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
hypothetical protein
cg_0.2_sub10_scaffold_172_c_trna_3
unknown

Not on your lists

comp(13443..13514)
DNA (72bp)
transferRNA
cg_0.2_sub10_scaffold_172_c_15
unknown

Not on your lists

13517..13705
DNA (189bp) protein (63aa)

This feature has no annotations

cg_0.2_sub10_scaffold_172_c_trna_2
unknown

Not on your lists

comp(13521..13594)
DNA (74bp)
transferRNA
cg_0.2_sub10_scaffold_172_c_16
CG_CPR12_01, CG_CPR12, Bacteria

Not on your lists

comp(13700..13996)
DNA (297bp) protein (99aa)
hup; DNA-binding protein HU; K03530 DNA-binding protein HU-beta Tax=CG_CPR12_01
hypothetical protein id=5801620 bin=GWE2_OD1_42_8 species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=GWE2_OD1_42_8 organism_group=OD1 (Parcubacteria) organism_desc=GW2011_OD1_1 GW2011_A
hup; DNA-binding protein HU
cg_0.2_sub10_scaffold_172_c_17
CG_CPR12_01, CG_CPR12, Bacteria

Not on your lists

comp(14123..14917)
DNA (795bp) protein (265aa)
Metallophosphoesterase n=1 Tax=Staphylococcus sp. HGB0015 RepID=S2XK50_9STAP
hypothetical protein; K09769 hypothetical protein Tax=CG_CPR12_01
phosphoesterase
cg_0.2_sub10_scaffold_172_c_18
CG_CPR12_01, CG_CPR12, Bacteria

Not on your lists

comp(14997..16517)
DNA (1521bp) protein (507aa)
HDIG/KH domain-containing protein; K06950 uncharacterized protein Tax=CG_CPR12_01
drm:Dred_1919 phosphodiesterase; K06950 id=120394 bin=ACD76 species=ACD76 genus=ACD76 taxon_order=ACD76 taxon_class=ACD76 phylum=OD1 tax=ACD76 organism_group=OD1 (Parcubacteria) organism_desc=OD1
HDIG/KH domain-containing protein
cg_0.2_sub10_scaffold_172_c_19
CG_CPR12_01, CG_CPR12, Bacteria

Not on your lists

comp(16953..17936)
DNA (984bp) protein (328aa)
MgpA protein; K06881 phosphoesterase RecJ domain-containing protein Tax=CG_CPR12_01
phosphoesterase RecJ domain protein; K06881 id=52912 bin=ACD41 species=ACD41 genus=ACD41 taxon_order=ACD41 taxon_class=ACD41 phylum=OD1 tax=ACD41 organism_group=OD1 (Parcubacteria) organism_desc=OD1
MgpA protein
cg_0.2_sub10_scaffold_172_c_20
CG_CPR12_01, CG_CPR12, Bacteria

Not on your lists

comp(17949..18275)
DNA (327bp) protein (109aa)
Ribosome-binding factor A n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HXK3_9BACT
ribosome-binding factor A; K02834 ribosome-binding factor A Tax=CG_CPR12_01
cg_0.2_sub10_scaffold_172_c_21
CG_CPR12_01, CG_CPR12, Bacteria

Not on your lists

comp(18335..20344)
DNA (2010bp) protein (670aa)
Translation initiation factor IF-2 n=1 Tax=uncultured bacterium RepID=K1Z673_9BACT
infB; translation initiation factor IF-2; K02519 translation initiation factor IF-2 Tax=CG_CPR12_01
infB; translation initiation factor IF-2
cg_0.2_sub10_scaffold_172_c_22
CG_CPR12_01, CG_CPR12, Bacteria

Not on your lists

20428..21159
DNA (732bp) protein (244aa)
tRNA pseudouridine 55 synthase; K03177 tRNA pseudouridine55 synthase [EC:5.4.99.25] Tax=CG_CPR12_01
tRNA pseudouridine synthase B id=1816798 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
tRNA pseudouridine 55 synthase
cg_0.2_sub10_scaffold_172_c_23
CG_CPR12_01, CG_CPR12, Bacteria

Not on your lists

21229..22527
DNA (1299bp) protein (433aa)
aspartate transaminase Tax=CG_CPR12_01
Aminotransferase class I and II id=4093197 bin=GWC2_Nitrospirae_57_13 species=unknown genus=Methanotorris taxon_order=Methanococcales taxon_class=Methanococci phylum=Euryarchaeota tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
aspartate transaminase
cg_0.2_sub10_scaffold_172_c_24
CG_CPR12_01, CG_CPR12, Bacteria

Not on your lists

comp(22505..22648)
DNA (144bp) protein (48aa)
Tax=CG_CPR12_01
cg_0.2_sub10_scaffold_172_c_25
CG_CPR12_01, CG_CPR12, Bacteria

Not on your lists


22687..22977
DNA (291bp) protein (97aa)
rpsT; 30S ribosomal protein S20 Tax=CG_CPR12_01
30S ribosomal protein S20 id=1981112 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
30S ribosomal protein S20
cg_0.2_sub10_scaffold_172_c_26
CG_CPR12_01, CG_CPR12, Bacteria

Not on your lists

comp(22919..23950)
DNA (1032bp) protein (344aa)
DNA polymerase III, delta subunit n=1 Tax=uncultured bacterium RepID=K1ZGE1_9BACT
DNA polymerase III, delta subunit Tax=CG_CPR12_01
cg_0.2_sub10_scaffold_172_c_27
CG_CPR12_01, CG_CPR12, Bacteria

Not on your lists

comp(24046..26769)
DNA (2724bp) protein (908aa)
DNA polymerase I; K02335 DNA polymerase I [EC:2.7.7.7] Tax=CG_CPR12_01
hypothetical protein id=5801487 bin=GWE2_OD1_42_8 species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=GWE2_OD1_42_8 organism_group=OD1 (Parcubacteria) organism_desc=GW2011_OD1_1 GW2011_A
DNA polymerase I
Displaying items 1-30 of 41 in total

View Taxonomy