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PW_scaffold_21

Alias: PW_Methanogen_55_643_5

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Displaying items 1-30 of 66 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PW_scaffold_21_1
Methanosarcina sp. MTP4, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(107..742)
DNA (636bp) protein (212aa)
Pyridoxal 5'-phosphate synthase subunit PdxT {ECO:0000256|HAMAP-Rule:MF_01615}; EC=4.3.3.6 {ECO:0000256|HAMAP-Rule:MF_01615};; Pdx2 {ECO:0000256|HAMAP-Rule:MF_01615}; Pyridoxal 5'-phosphate synthase g
pdxT; pyridoxal phosphate synthase yaaE subunit (EC:2.6.-.-)
Glutamine amidotransferase subunit PdxT
PW_scaffold_21_2
Methanomethylovorans hollandica, Methanomethylovorans, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(743..1639)
DNA (897bp) protein (299aa)
Pyridoxal 5'-phosphate synthase subunit PdxS {ECO:0000256|HAMAP-Rule:MF_01824}; Short=PLP synthase subunit PdxS {ECO:0000256|HAMAP-Rule:MF_01824};; EC=4.3.3.6 {ECO:0000256|HAMAP-Rule:MF_01824};; Pdx1
pyridoxal 5''-phosphate synthase, synthase subunit Pdx1
Pyridoxal biosynthesis lyase PdxS
PW_scaffold_21_3
Methanosarcina sp. MTP4, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(1685..3091)
DNA (1407bp) protein (469aa)
5'-deoxyadenosine deaminase {ECO:0000256|HAMAP-Rule:MF_01281}; Short=5'-dA deaminase {ECO:0000256|HAMAP-Rule:MF_01281};; EC=3.5.4.41 {ECO:0000256|HAMAP-Rule:MF_01281};; TaxID=1434100 species="Archaea;
S-adenosylhomocysteine deaminase (EC:3.5.4.28)
5-methylthioadenosine/S-adenosylhomocysteine deaminase
PW_scaffold_21_4
Archaeoglobus fulgidus, Archaeoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

Not on your lists

comp(3273..3833)
DNA (561bp) protein (187aa)
rRNA (adenine-N6)-methyltransferase
rRNA (Adenine-N6)-methyltransferase, putative {ECO:0000313|EMBL:AAB89062.1}; TaxID=224325 species="Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Archaeoglobus.;" source="Arc
rRNA (Adenine-N6)-methyltransferase, putative
PW_scaffold_21_5
Methanofollis liminatans, Methanofollis, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

4179..5000
DNA (822bp) protein (274aa)
CRISPR-associated protein Cas4 {ECO:0000313|EMBL:EJG08106.1}; Flags: Precursor;; TaxID=28892 species="Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae; Methanofollis.;"
CRISPR-associated Cas4 family protein
CRISPR-associated protein Cas4
PW_scaffold_21_6
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

5235..5618
DNA (384bp) protein (128aa)
Endonuclease Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Endonuclease
Endonuclease, putative
PW_scaffold_21_7
Archaeoglobus veneficus, Archaeoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

Not on your lists

5917..7263
DNA (1347bp) protein (449aa)
type III restriction protein res subunit
Type III restriction protein res subunit {ECO:0000313|EMBL:AEA47639.1}; TaxID=693661 species="Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Archaeoglobus.;" source="Archaeog
Type III restriction protein res subunit
PW_scaffold_21_8
Archaeoglobus veneficus, Archaeoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

Not on your lists

7241..8713
DNA (1473bp) protein (491aa)
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:AEA47638.1}; TaxID=693661 species="Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Archaeoglobus.;" source="Archaeoglobus ve
Putative uncharacterized protein
PW_scaffold_21_9
Methanosarcina vacuolata, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(9299..9853)
DNA (555bp) protein (185aa)
Signal peptidase I (EC:3.4.21.89)
Signal peptidase I {ECO:0000313|EMBL:AKB42347.1}; EC=3.4.21.89 {ECO:0000313|EMBL:AKB42347.1};; TaxID=1434123 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Me
Signal sequence peptidase
PW_scaffold_21_10
Methanosalsum zhilinae, Methanosalsum, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

9918..11420
DNA (1503bp) protein (501aa)
DNA-directed DNA polymerase (EC:2.7.7.7)
DNA polymerase II small subunit {ECO:0000256|HAMAP-Rule:MF_00325}; Short=Pol II {ECO:0000256|HAMAP-Rule:MF_00325};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_00325};; TaxID=679901 species="Archaea; Euryar
DNA-directed DNA polymerase
PW_scaffold_21_11
Methanosaeta harundinacea, Methanosaeta, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(11875..12837)
DNA (963bp) protein (321aa)
CaCA family Na+/Ca+ antiporter
Na+/Ca+ antiporter, CaCA family {ECO:0000313|EMBL:AET64263.1}; TaxID=1110509 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosaetaceae; Methanosaeta.;" source="Methanosaeta
Na+/Ca+ antiporter, CaCA family
PW_scaffold_21_12
Thermotoga sp. Mc24, Thermotoga, Thermotogales, Thermotogae, Thermotogae, Bacteria

Not on your lists

comp(13195..13917)
DNA (723bp) protein (241aa)
phosphotransferase domain-containing protein rbh
Phosphotransferase domain-containing protein {ECO:0000313|EMBL:KHC90428.1}; TaxID=1231241 species="Bacteria; Thermotogae; Thermotogales; Thermotogaceae; Thermotoga.;" source="Thermotoga sp. Mc24.;"
PHP domain protein
PW_scaffold_21_13
unknown

Not on your lists

comp(13987..14193)
DNA (207bp) protein (69aa)
PW_scaffold_21_14
Methanosarcina sp. WWM596, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

14313..14855
DNA (543bp) protein (181aa)
Pyruvate:ferredoxin oxidoreductase, gamma subunit {ECO:0000313|EMBL:AKB20243.1}; EC=1.2.7.1 {ECO:0000313|EMBL:AKB20243.1};; TaxID=1434103 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarci
porG; pyruvate ferredoxin oxidoreductase subunit gamma (EC:1.2.7.1)
Pyruvate synthase, subunit gamma
PW_scaffold_21_15
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

14856..15125
DNA (270bp) protein (90aa)
Pyruvate:ferredoxin oxidoreductase, delta subunit (EC:1.2.7.1)
pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit; K00171 pyruvate ferredoxin oxidoreductase, delta subunit [EC:1.2.7.1] Tax=RBG_16_Euryarchaeota_41_19_curated
Pyruvate synthase, delta subunit
PW_scaffold_21_16
Methanomethylovorans hollandica, Methanomethylovorans, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

15125..16327
DNA (1203bp) protein (401aa)
2-oxoacid:ferredoxin oxidoreductase, alpha subunit
2-oxoacid:ferredoxin oxidoreductase, alpha subunit {ECO:0000313|EMBL:AGB50582.1}; TaxID=867904 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanomethylovo
2-oxoacid:ferredoxin oxidoreductase, alpha subunit
PW_scaffold_21_17
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

16324..17220
DNA (897bp) protein (299aa)
porB; pyruvate synthase, subunit beta; K00170 pyruvate ferredoxin oxidoreductase, beta subunit [EC:1.2.7.1] Tax=RBG_16_Euryarchaeota_41_19_curated
pyruvate ferredoxin oxidoreductase, beta subunit
Pyruvate ferredoxin oxidoreductase, beta subunit
PW_scaffold_21_18
Geoglobus acetivorans, Geoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

Not on your lists

17207..18010
DNA (804bp) protein (268aa)
Coenzyme F420:L-glutamate ligase {ECO:0000256|HAMAP-Rule:MF_01258}; EC=6.3.2.31 {ECO:0000256|HAMAP-Rule:MF_01258};; EC=6.3.2.34 {ECO:0000256|HAMAP-Rule:MF_01258};; Coenzyme F420-0:L-glutamate ligase {
F420-dependent oxidoreductase
Coenzyme F420:L-glutamate ligase
PW_scaffold_21_19
Methanococcoides methylutens, Methanococcoides, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(18007..18789)
DNA (783bp) protein (261aa)
Tryptophan synthase alpha chain {ECO:0000256|HAMAP-Rule:MF_00131}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00131};; TaxID=2226 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Metha
tryptophan synthase subunit alpha (EC:4.2.1.20)
Tryptophan synthase alpha chain
PW_scaffold_21_20
Methanococcoides burtonii, Methanococcoides, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(18779..19924)
DNA (1146bp) protein (382aa)
tryptophan synthase subunit beta (EC:4.2.1.20)
Tryptophan synthase beta chain {ECO:0000256|HAMAP-Rule:MF_00133}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00133};; TaxID=259564 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Meth
Tryptophan synthase beta chain
PW_scaffold_21_21
Methanosarcina sp. MTP4, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(19972..20811)
DNA (840bp) protein (280aa)
Indole-3-glycerol phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00134}; Short=IGPS {ECO:0000256|HAMAP-Rule:MF_00134};; EC=4.1.1.48 {ECO:0000256|HAMAP-Rule:MF_00134};; TaxID=1434100 species="Archaea; E
Indole-3-glycerol phosphate synthase (EC:4.1.1.48)
Indole-3-glycerol phosphate synthase
PW_scaffold_21_22
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

comp(20817..21404)
DNA (588bp) protein (196aa)
anthranilate synthase component II (EC:4.1.3.27)
glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase Tax=RBG_16_Euryarchaeota_41_19_curated
Anthranilate synthase component II
PW_scaffold_21_23
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(21401..22969)
DNA (1569bp) protein (523aa)
Anthranilate synthase, component I {ECO:0000313|EMBL:KCZ71888.1}; EC=4.1.3.27 {ECO:0000313|EMBL:KCZ71888.1};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candida
anthranilate synthase subunit I (EC:4.1.3.27)
Anthranilate synthase, component I
PW_scaffold_21_24
Halorhabdus utahensis, Halorhabdus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(22962..23597)
DNA (636bp) protein (212aa)
Phosphoribosylanthranilate isomerase (EC:5.3.1.24)
N-(5'-phosphoribosyl)anthranilate isomerase {ECO:0000256|HAMAP-Rule:MF_00135}; Short=PRAI {ECO:0000256|HAMAP-Rule:MF_00135};; EC=5.3.1.24 {ECO:0000256|HAMAP-Rule:MF_00135};; TaxID=519442 species="Arch
N-(5'-phosphoribosyl)anthranilate isomerase
PW_scaffold_21_25
Methanosaeta thermophila, Methanosaeta, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(23597..24610)
DNA (1014bp) protein (338aa)
Anthranilate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00211}; EC=2.4.2.18 {ECO:0000256|HAMAP-Rule:MF_00211};; TaxID=349307 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinal
anthranilate phosphoribosyltransferase
Anthranilate phosphoribosyltransferase
PW_scaffold_21_26
Methanomethylovorans hollandica, Methanomethylovorans, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

24690..27599
DNA (2910bp) protein (970aa)
Lhr-like helicase
Lhr-like helicase {ECO:0000313|EMBL:AGB49026.1}; TaxID=867904 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanomethylovorans.;" source="Methanomethylovor
Lhr-like helicase
PW_scaffold_21_27
Methanosarcina siciliae, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

27645..28133
DNA (489bp) protein (163aa)
Copper binding protein, plastocyanin/azurin family {ECO:0000313|EMBL:AKB32156.1}; TaxID=1434119 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.
PKD domain-containing protein
PKD domain containing protein
PW_scaffold_21_28
BJP_IG2103_Methanoregula_55_19, Methanoregula, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

28134..29237
DNA (1104bp) protein (368aa)
tRNA (guanine-N(2)-)-methyltransferase (EC:2.1.1.32)
tRNA (guanine(26)-N(2))-dimethyltransferase
Tax=BJP_IG2103_Methanoregula_55_19
PW_scaffold_21_29
Methanolobus tindarius, Methanolobus, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

29424..29741
DNA (318bp) protein (106aa)
Uncharacterized protein {ECO:0000313|EMBL:ETA68407.1}; TaxID=1090322 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanolobus.;" source="Methanolobus tinda
hypothetical protein
Putative uncharacterized protein
PW_scaffold_21_30
Methanococcoides methylutens, Methanococcoides, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(29738..30865)
DNA (1128bp) protein (376aa)
DNA primase small subunit PriS {ECO:0000256|HAMAP-Rule:MF_00700, ECO:0000256|SAAS:SAAS00011001}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00700, ECO:0000256|SAAS:SAAS00044138};; TaxID=2226 species="Archa
DNA primase small subunit (EC:2.7.7.-)
Probable DNA primase small subunit
Displaying items 1-30 of 66 in total

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