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PW_scaffold_88

Alias: PW_Methanogen_55_643_15

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Displaying items 1-30 of 36 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PW_scaffold_88_1
unknown

Not on your lists

116..397
DNA (282bp) protein (94aa)
PW_scaffold_88_2

Not on your lists

comp(401..2236)
DNA (1836bp) protein (612aa)
Probable sodium/proline symporter {ECO:0000313|EMBL:CAI64191.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
Na+/solute symporter
Na+/proline symporter
PW_scaffold_88_3
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

2464..3258
DNA (795bp) protein (265aa)
cobalamin 5'-phosphate synthase; K02233 adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26] Tax=RBG_16_Euryarchaeota_41_19_curated
cobalamin-5'-phosphate synthase (EC:2.7.8.26)
Cobalamin synthase
PW_scaffold_88_4
Methanosarcina barkeri, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

3243..3860
DNA (618bp) protein (206aa)
putative adenosylcobinamide-phosphate guanylyltransferase CobY (EC:2.7.7.62)
Adenosylcobinamide-phosphate guanylyltransferase {ECO:0000313|EMBL:AAZ72330.1}; EC=2.7.7.62 {ECO:0000313|EMBL:AAZ72330.1};; TaxID=269797 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcin
Adenosylcobinamide-phosphate guanylyltransferase
PW_scaffold_88_5
Archaeoglobus fulgidus, Archaeoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

Not on your lists

3864..4994
DNA (1131bp) protein (377aa)
nicotinate phosphoribosyltransferase (EC:6.3.4.21)
Uncharacterized protein {ECO:0000313|EMBL:AAB90414.1}; TaxID=224325 species="Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Archaeoglobus.;" source="Archaeoglobus fulgidus (s
Putative uncharacterized protein
PW_scaffold_88_6
unknown

Not on your lists

comp(4996..5190)
DNA (195bp) protein (65aa)
PW_scaffold_88_7
RLO_Nitrospinae_45_22, Nitrospinae, Bacteria

Not on your lists

comp(5192..6358)
DNA (1167bp) protein (389aa)
hypothetical protein; K01551 arsenite-transporting ATPase [EC:3.6.3.16] Tax=RIFCSPLOWO2_12_FULL_Nitrospinae_45_22_curated
arsenite-activated ATPase ArsA
Arsenite-activated ATPase ArsA
PW_scaffold_88_8
Methanosarcina sp. MTP4, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(6364..7005)
DNA (642bp) protein (214aa)
Putative metal dependent hydrolase {ECO:0000313|EMBL:AKB26475.1}; TaxID=1434100 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Metha
putative metal dependent hydrolase
Uncharacterized protein
PW_scaffold_88_9
Methanohalobium evestigatum, Methanohalobium, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

7091..8380
DNA (1290bp) protein (430aa)
diaminopimelate decarboxylase
Diaminopimelate decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738}; Short=DAP decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120};; Short=DAPDC {ECO:0000256|HAMAP-Rule:MF_02120
Diaminopimelate decarboxylase
PW_scaffold_88_10

Not on your lists

8428..9093
DNA (666bp) protein (222aa)
Phosphatidylethanolamine N-methyltransferase {ECO:0000313|EMBL:AAU83081.1}; TaxID=290245 species="Archaea; environmental samples.;" source="uncultured archaeon GZfos26E7.;"
methyltransferase type 11
Phosphatidylethanolamine N-methyltransferase
PW_scaffold_88_11
Methanocella conradii, Methanocella, Methanocellales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(9205..9873)
DNA (669bp) protein (223aa)
ACT domain-containing protein rbh
ACT domain-containing protein {ECO:0000313|EMBL:AFD01111.1}; TaxID=1041930 species="Archaea; Euryarchaeota; Methanomicrobia; Methanocellales; Methanocellaceae; Methanocella.;" source="Methanocella con
ACT domain-containing protein
PW_scaffold_88_12
Methanosalsum zhilinae, Methanosalsum, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(9923..10684)
DNA (762bp) protein (254aa)
Deoxyribonuclease V (EC:3.1.21.7)
Endonuclease V {ECO:0000256|HAMAP-Rule:MF_00801}; EC=3.1.21.7 {ECO:0000256|HAMAP-Rule:MF_00801};; Deoxyinosine 3'endonuclease {ECO:0000256|HAMAP-Rule:MF_00801}; Deoxyribonuclease V {ECO:0000256|HAMAP-
Endonuclease V
PW_scaffold_88_13
Methanolobus tindarius, Methanolobus, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(10632..11114)
DNA (483bp) protein (161aa)
Acetyltransferase {ECO:0000313|EMBL:ETA68418.1}; TaxID=1090322 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanolobus.;" source="Methanolobus tindarius D
ribosomal-protein-alanine acetyltransferase
Ribosomal-protein-alanine acetyltransferase
PW_scaffold_88_14
Methanolobus psychrophilus, Methanolobus, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(11098..12087)
DNA (990bp) protein (330aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFV23543.1}; TaxID=1094980 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanolobus.;" source="Methanolobus psych
Uncharacterized protein
PW_scaffold_88_15
Archaeoglobus veneficus, Archaeoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

Not on your lists


12212..12682
DNA (471bp) protein (157aa)
30S ribosomal protein S19
30S ribosomal protein S19e {ECO:0000256|HAMAP-Rule:MF_01474}; TaxID=693661 species="Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Archaeoglobus.;" source="Archaeoglobus vene
30S ribosomal protein S19e
PW_scaffold_88_16
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

12691..13032
DNA (342bp) protein (114aa)
DNA-binding TFAR19-related protein Tax=RBG_16_Euryarchaeota_41_19_curated
DNA-binding protein
DNA-binding protein MCON_2624
PW_scaffold_88_17
Pyrococcus yayanosii, Pyrococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

Not on your lists

13032..13640
DNA (609bp) protein (203aa)
ATPase
ATPase {ECO:0000313|EMBL:AEH25359.1}; TaxID=529709 species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Pyrococcus.;" source="Pyrococcus yayanosii (strain CH1 / JCM 16557).;"
ATPase
PW_scaffold_88_18
Methanococcoides burtonii, Methanococcoides, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

13637..13789
DNA (153bp) protein (51aa)
rpl39e; 50S ribosomal protein L39e
50S ribosomal protein L39e {ECO:0000255|HAMAP-Rule:MF_00629}; TaxID=259564 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanococcoides.;" source="Methanoc
50S ribosomal protein L39e
PW_scaffold_88_19
Methanococcoides methylutens, Methanococcoides, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

13799..14059
DNA (261bp) protein (87aa)
50S ribosomal protein L31e {ECO:0000256|HAMAP-Rule:MF_00410}; TaxID=2226 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanococcoides.;" source="Methanococ
50S ribosomal protein L31e
50S ribosomal protein L31e
PW_scaffold_88_20
Methanosaeta thermophila, Methanosaeta, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

14070..14753
DNA (684bp) protein (228aa)
translation initiation factor IF-6
Translation initiation factor 6 {ECO:0000256|HAMAP-Rule:MF_00032}; Short=aIF-6 {ECO:0000256|HAMAP-Rule:MF_00032};; TaxID=349307 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Met
Translation initiation factor 6
PW_scaffold_88_21
Methanolobus psychrophilus, Methanolobus, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists


14766..14951
DNA (186bp) protein (62aa)
rplX; 50S ribosomal protein LX
50S ribosomal protein L18Ae {ECO:0000256|HAMAP-Rule:MF_00273}; 50S ribosomal protein L20e {ECO:0000256|HAMAP-Rule:MF_00273}; 50S ribosomal protein LX {ECO:0000256|HAMAP-Rule:MF_00273}; TaxID=1094980 s
50S ribosomal protein LX
PW_scaffold_88_22
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

14953..15390
DNA (438bp) protein (146aa)
prefoldin alpha subunit/subunit 5 Tax=RBG_16_Euryarchaeota_41_19_curated
prefoldin subunit alpha
Prefoldin subunit alpha
PW_scaffold_88_23
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

15387..16373
DNA (987bp) protein (329aa)
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; TaxID=1392998 species="Archaea; Euryarchaeota; Methanomicrobia; Meth
signal recognition particle-docking protein FtsY
Signal recognition particle receptor FtsY
PW_scaffold_88_24
Methanosarcina siciliae, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

16388..16894
DNA (507bp) protein (169aa)
Cob(I)alamin adenosyltransferase {ECO:0000313|EMBL:AKB36691.1}; EC=2.5.1.17 {ECO:0000313|EMBL:AKB36691.1};; TaxID=1434118 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosa
Cob(I)alamin adenosyltransferase
Cob(I)alamin adenosyltransferase
PW_scaffold_88_25
Methanococcoides methylutens, Methanococcoides, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(16897..17832)
DNA (936bp) protein (312aa)
Potassium efflux system KefA protein {ECO:0000313|EMBL:AKB84527.1}; TaxID=1434104 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanococcoides.;" source="M
mechanosensitive ion channel MscS
MscS Mechanosensitive ion channel
PW_scaffold_88_26
Thermococcus sibiricus, Thermococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

Not on your lists

17921..18985
DNA (1065bp) protein (355aa)
Glycosyl transferase 2
Glycosyl transferase family 2 {ECO:0000313|EMBL:ACS91106.1}; TaxID=604354 species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus.;" source="Thermococcus sibiricus
Glycosyl transferase family 2
PW_scaffold_88_27
Methanosaeta thermophila, Methanosaeta, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(19000..19377)
DNA (378bp) protein (126aa)
30S ribosomal protein S8e
30S ribosomal protein S8e {ECO:0000255|HAMAP-Rule:MF_00029}; TaxID=349307 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosaetaceae; Methanosaeta.;" source="Methanosaeta th
30S ribosomal protein S8e
PW_scaffold_88_28
Methanotorris igneus, Methanotorris, Methanococcales, Methanococci, Euryarchaeota, Archaea

Not on your lists

comp(19817..21679)
DNA (1863bp) protein (621aa)
Coenzyme F420 hydrogenase., Hydrogensulfite reductase {ECO:0000313|EMBL:AEF96582.1}; EC=1.12.98.1 {ECO:0000313|EMBL:AEF96582.1};; EC=1.8.99.3 {ECO:0000313|EMBL:AEF96582.1};; TaxID=880724 species="Arch
Coenzyme F420 hydrogenase., hydrogensulfite reductase rbh
Coenzyme F420 hydrogenase., Hydrogensulfite reductase
PW_scaffold_88_29
Methanocella conradii, Methanocella, Methanocellales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(22064..23203)
DNA (1140bp) protein (380aa)
Sep-tRNA:Cys-tRNA synthase (EC:2.5.1.73)
O-phospho-L-seryl-tRNA:Cys-tRNA synthase {ECO:0000256|HAMAP-Rule:MF_01675}; EC=2.5.1.73 {ECO:0000256|HAMAP-Rule:MF_01675};; Sep-tRNA:Cys-tRNA synthase {ECO:0000256|HAMAP-Rule:MF_01675}; TaxID=1041930
O-phospho-L-seryl-tRNA:Cys-tRNA synthase
PW_scaffold_88_30
Methanococcoides methylutens, Methanococcoides, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(23200..24201)
DNA (1002bp) protein (334aa)
homoserine dehydrogenase (EC:1.1.1.3)
Homoserine dehydrogenase {ECO:0000313|EMBL:AKB85642.1}; EC=1.1.1.3 {ECO:0000313|EMBL:AKB85642.1};; TaxID=1434104 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae
Homoserine dehydrogenase
Displaying items 1-30 of 36 in total

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