ggKbase home page

13_1_40cm_4_scaffold_4579

Search features with annotation key words

Displaying 16 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_4579_1
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

1..141
DNA (141bp) protein (47aa)
Transcription initiation factor IIB n=1 Tax=Aciduliprofundum boonei (strain DSM 19572 / T469) RepID=B5I9V2_ACIB4
Transcription initiation factor B Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
Zinc finger TFIIB-type domain protein
13_1_40cm_4_scaffold_4579_2
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists

217..1152
DNA (936bp) protein (312aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI000374592B
peptidylprolyl isomerase FKBP-type Tax=RBG_16_Euryarchaeota_67_27_curated
peptidylprolyl isomerase FKBP-type
13_1_40cm_4_scaffold_4579_trna_1
unknown

Not on your lists

comp(1224..1296)
DNA (73bp)
transferRNA
13_1_40cm_4_scaffold_4579_3
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(1350..2222)
DNA (873bp) protein (291aa)
argK2; lysine arginine ornithine transport system kinase; K07588 LAO/AO transport system kinase [EC:2.7.-.-] Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
LAO/AO transport system ATPase n=1 Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CJH1_DESK7
LAO/AO transport system ATPase
13_1_40cm_4_scaffold_4579_4
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(2289..2681)
DNA (393bp) protein (131aa)
cobalamin b12-binding domain protein; K01849 methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2] Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
Methylmalonyl-CoA mutase, C-terminal domain/subunit n=1 Tax=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) RepID=A5D2I7_PELTS
MmcF; methylmalonyl-CoA mutase C-terminal domain-containing protein
13_1_40cm_4_scaffold_4579_5
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(2691..4370)
DNA (1680bp) protein (560aa)
methylmalonyl-CoA mutase large subunit (EC:5.4.99.2); K01848 methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2] Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
methylmalonyl-CoA mutase large subunit (EC:5.4.99.2)
Methylmalonyl-CoA mutase, N-terminal domain (Fragment) n=1 Tax=uncultured Chloroflexi bacterium RepID=H5SIE1_9CHLR
13_1_40cm_4_scaffold_4579_6
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(4432..4968)
DNA (537bp) protein (179aa)
Putative Ras family protein n=1 Tax=uncultured marine microorganism HF4000_APKG10F13 RepID=B3TBS9_9ZZZZ
small GTP-binding protein Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
small GTP-binding protein
13_1_40cm_4_scaffold_4579_7
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists

comp(5068..5544)
DNA (477bp) protein (159aa)
Putative uncharacterized protein n=1 Tax=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) RepID=O29297_ARCFU
hypothetical protein; K07068 Tax=RBG_16_Euryarchaeota_67_27_curated
putative nucleic-acid-binding protein
13_1_40cm_4_scaffold_4579_8
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(5541..6062)
DNA (522bp) protein (174aa)
Putative nucleic-acid-binding protein containing a Zn-ribbon n=1 Tax=Archaeoglobus sulfaticallidus PM70-1 RepID=N0BD85_9EURY
putative nucleic-acid-binding protein containing a Zn-ribbon Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
putative nucleic-acid-binding protein containing a Zn-ribbon
13_1_40cm_4_scaffold_4579_9
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists

comp(6059..7225)
DNA (1167bp) protein (389aa)
acetyl-CoA acetyltransferase; K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9] Tax=RBG_16_Euryarchaeota_67_27_curated
Acetyl-CoA C-acetyltransferase n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5SS00_9BACT
acetyl-CoA acetyltransferase
13_1_40cm_4_scaffold_4579_10
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(7222..8373)
DNA (1152bp) protein (384aa)
acaB-10; acetyl-CoA acetyltransferase (EC:2.3.1.9); K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9] Tax=RBG_16_Euryarchaeota_68_12_curated
Acetyl-CoA C-acetyltransferase n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5SS01_9BACT
Acetyl-CoA acetyltransferase
13_1_40cm_4_scaffold_4579_11
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(8935..9225)
DNA (291bp) protein (97aa)
transcription regulator Tax=RBG_16_Euryarchaeota_68_12_curated
13_1_40cm_4_scaffold_4579_12
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists

9890..10456
DNA (567bp) protein (189aa)
hypothetical protein n=1 Tax=Nitrosopumilus sp. AR RepID=UPI0003634F2F
hypothetical protein Tax=RBG_16_Euryarchaeota_67_27_curated
hypothetical protein
13_1_40cm_4_scaffold_4579_13
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(10473..11000)
DNA (528bp) protein (176aa)
Tax=RBG_16_Euryarchaeota_68_12_curated
13_1_40cm_4_scaffold_4579_14
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(11084..11461)
DNA (378bp) protein (126aa)
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00037ACFB5
acetolactate synthase small subunit Tax=RBG_16_Euryarchaeota_68_12_curated
ACT domain protein-containing protein
13_1_40cm_4_scaffold_4579_15
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(11531..11872)
DNA (342bp) protein (114aa)
Aspartyl-tRNA synthetase (EC:6.1.1.12) Tax=RBG_16_Euryarchaeota_68_12_curated
Aspartyl-tRNA synthetase (EC:6.1.1.12)
Aspartyl-tRNA synthetase n=2 Tax=Euryarchaeota RepID=M9SBM8_9EURY
Displaying 16 items

View Taxonomy