ggKbase home page

13_1_40cm_scaffold_2308

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_2308_1
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(2..277)
DNA (276bp) protein (92aa)
DNA polymerase I (EC:2.7.7.7); K02335 DNA polymerase I [EC:2.7.7.7] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
polA; DNA polymerase I (EC:2.7.7.7)
DNA polymerase id=2399886 bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_2308_2
unknown

Not on your lists

comp(274..495)
DNA (222bp) protein (74aa)

This feature has no annotations

13_1_40cm_scaffold_2308_3
Bombyx mori, Bombyx, Lepidoptera, Neoptera, Arthropoda, Metazoa

Not on your lists

comp(2407..3768)
DNA (1362bp) protein (454aa)
PREDICTED: skin secretory protein xP2-like n=1 Tax=Bombyx mori RepID=UPI00034F8DF1
skin secretory protein xP2-like
13_1_40cm_scaffold_2308_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(4169..4507)
DNA (339bp) protein (113aa)
Nitrogen regulatory protein P-II id=4756404 bin=GWA2_Methylomirabilis_73_35 species=Deferribacter desulfuricans genus=Deferribacter taxon_order=Deferribacterales taxon_class=Deferribacteres phylum=Deferribacteres tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glnB; nitrogen regulatory protein P-II; K04751 nitrogen regulatory protein P-II 1 Tax=GWA2_Rokubacteria_73_35_curated
glnB; nitrogen regulatory protein P-II
13_1_40cm_scaffold_2308_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4509..6116)
DNA (1608bp) protein (536aa)
Na/Pi-cotransporter II-like protein; K03324 phosphate:Na+ symporter Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Na/Pi-cotransporter II-related protein id=3240695 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Na/Pi-cotransporter II-like protein
13_1_40cm_scaffold_2308_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(6113..6745)
DNA (633bp) protein (211aa)
GpmB; fructose-2,6-bisphosphatase; K15634 probable phosphoglycerate mutase [EC:5.4.2.1] Tax=GWA2_Rokubacteria_73_35_curated
Fructose-2,6-bisphosphatase id=4756401 bin=GWA2_Methylomirabilis_73_35 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
phosphoglycerate mutase
13_1_40cm_scaffold_2308_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6742..8166)
DNA (1425bp) protein (475aa)
glutamyl-tRNA synthetase (EC:6.1.1.17); K01885 glutamyl-tRNA synthetase [EC:6.1.1.17] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Glutamate--tRNA ligase id=4756400 bin=GWA2_Methylomirabilis_73_35 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glutamyl-tRNA synthetase
13_1_40cm_scaffold_2308_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(8199..8594)
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Thermacetogenium phaeum (strain ATCC BAA-254 / DSM 12270 / PB) RepID=K4LEF1_THEPS
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_scaffold_2308_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(8591..9208)
DNA (618bp) protein (206aa)
Uncharacterized protein n=1 Tax=candidate division ZIXI bacterium RBG-1 RepID=T0L822_9BACT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein
13_1_40cm_scaffold_2308_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(9240..10118)
DNA (879bp) protein (293aa)
4-hydroxybenzoate polyprenyltransferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative conserved membrane protein id=4756383 bin=GWA2_Methylomirabilis_73_35 species=uncultured Acidobacteria bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
4-hydroxybenzoate polyprenyltransferase
13_1_40cm_scaffold_2308_11
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(10126..11439)
DNA (1314bp) protein (438aa)
UDP-glucose 6-dehydrogenase (EC:1.1.1.22)
Nucleotide-sugar dehydrogenase id=4811707 bin=GWC2_Methylomirabilis_70_24 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
nucleotide-sugar dehydrogenase Tax=GWA2_Rokubacteria_70_23_curated
13_1_40cm_scaffold_2308_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(11609..12784)
DNA (1176bp) protein (392aa)
glutamine--scyllo-inositol transaminase (EC:2.6.1.50)
DegT/DnrJ/EryC1/StrS aminotransferase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
DegT/DnrJ/EryC1/StrS family protein id=14627076 bin=bin7_NC10_sister species=Gloeobacter violaceus genus=Gloeobacter taxon_order=Gloeobacterales taxon_class=Gloeobacteria phylum=Cyanobacteria tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_scaffold_2308_13
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(12781..15000)
DNA (2220bp) protein (740aa)
organic solvent tolerance protein; K04744 LPS-assembly protein id=14627077 bin=bin7_NC10_sister species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
organic solvent tolerance protein; K04744 LPS-assembly protein Tax=CSP1_6_Rokubacteria
lipopolysaccharide biosynthesis protein
13_1_40cm_scaffold_2308_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(14987..16315)
DNA (1329bp) protein (443aa)
folyl-polyglutamate synthetase; K11754 dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
FolC bifunctional protein id=4811710 bin=GWC2_Methylomirabilis_70_24 species=Myxococcus stipitatus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
bifunctional folylpolyglutamate synthase/dihydrofolate synthase
13_1_40cm_scaffold_2308_15
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(16312..17172)
DNA (861bp) protein (287aa)
accD; acetyl-CoA carboxylase, carboxyl transferase subunit beta; K01963 acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2] id=14627079 bin=bin7_NC10_sister species=Leptospirillum ferrodiazotrophum genus=Leptospirillum taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10
accD; acetyl-CoA carboxylase, carboxyl transferase subunit beta; K01963 acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2] Tax=CSP1_6_Rokubacteria
acetyl-CoA carboxyl transferase
Displaying 15 items

View Taxonomy