ggKbase home page

13_1_40cm_scaffold_238

Search features with annotation key words

Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_238_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

633..848
DNA (216bp) protein (72aa)
hypothetical protein id=3431003 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_scaffold_238_2
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(949..1872)
DNA (924bp) protein (308aa)
hypothetical protein id=14429739 bin=bin3_NC10 species=Desulfitobacterium hafniense genus=Desulfitobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin3_NC10 organism_group=NC10
hypothetical protein Tax=CSP1_5_NC10
Alpha/beta hydrolase fold
13_1_40cm_scaffold_238_3
Burkholderia sp. H160, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2118..2957
DNA (840bp) protein (280aa)
phosphoesterase PA-phosphatase n=1 Tax=Nevskia ramosa RepID=UPI0003B5625C
membrane protein DedA and phosphatase, PAP2-like family
Phosphoesterase PA-phosphatase related {ECO:0000313|EMBL:EDZ99467.1}; TaxID=516466 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Bur
13_1_40cm_scaffold_238_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3049..3543)
DNA (495bp) protein (165aa)
Uncharacterized protein conserved in bacteria Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_1_40cm_scaffold_238_5
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(3809..4258)
DNA (450bp) protein (150aa)
Lytic transglycosylase, catalytic id=3544309 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Lytic transglycosylase, catalytic Tax=GWC2_Rokubacteria_70_16_curated
lytic transglycosylase catalytic subunit
13_1_40cm_scaffold_238_6
unknown

Not on your lists

comp(4438..4608)
DNA (171bp) protein (57aa)

This feature has no annotations

13_1_40cm_scaffold_238_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4635..5360)
DNA (726bp) protein (242aa)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_1_40cm_scaffold_238_8
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

5753..5989
DNA (237bp) protein (79aa)
Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
13_1_40cm_scaffold_238_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(6024..6656)
DNA (633bp) protein (211aa)
Putative uncharacterized protein id=4806968 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Putative uncharacterized protein Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_scaffold_238_10
unknown

Not on your lists

comp(6907..7131)
DNA (225bp) protein (75aa)

This feature has no annotations

13_1_40cm_scaffold_238_11
unknown

Not on your lists

7912..8169
DNA (258bp) protein (86aa)

This feature has no annotations

13_1_40cm_scaffold_238_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8193..8798
DNA (606bp) protein (202aa)
id=3871362 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
id=3634144 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_1_40cm_scaffold_238_13
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

9295..9810
DNA (516bp) protein (172aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein id=3779770 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_238_14
unknown

Not on your lists

comp(9827..10105)
DNA (279bp) protein (93aa)

This feature has no annotations

13_1_40cm_scaffold_238_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(10102..11136)
DNA (1035bp) protein (345aa)
rod shape-determining protein MreB; K03569 rod shape-determining protein MreB and related proteins Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
mreB; Rod shape-determining protein mreB id=14626892 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
mreB; Rod shape-determining protein mreB
13_1_40cm_scaffold_238_16
RLO_Entotheonella_69_37, Entotheonella, Bacteria

Not on your lists

comp(11581..12114)
DNA (534bp) protein (178aa)
endoribonuclease; K07567 TdcF protein id=1246927 bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
translation inhibitor endoribonuclease; K07567 TdcF protein Tax=RIFCSPLOWO2_12_FULL_Entotheonella_69_37_curated
13_1_40cm_scaffold_238_17
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12156..12824)
DNA (669bp) protein (223aa)
Uncharacterized protein n=1 Tax=Methylocystis sp. (strain SC2) RepID=J7QLN8_METSZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCJ06043.1}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (s
13_1_40cm_scaffold_238_18
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

12925..13251
DNA (327bp) protein (109aa)
Putative uncharacterized protein n=1 Tax=Desulfobulbus propionicus (strain ATCC 33891 / DSM 2032 / 1pr3) RepID=E8RDI9_DESPD
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
hypothetical protein
13_1_40cm_scaffold_238_19
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

13264..13749
DNA (486bp) protein (162aa)
acetyltransferase (EC:2.3.1.-)
Putative acetyltransferase protein id=2497913 bin=GWC2_Methylomirabilis_70_24 species=Hydrocarboniphaga effusa genus=Hydrocarboniphaga taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
N-acetyltransferase GCN5 Tax=GWA2_Rokubacteria_70_23_curated
13_1_40cm_scaffold_238_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(13781..14926)
DNA (1146bp) protein (382aa)
multidrug/chloramphenicol efflux transporter, major facilitator superfamily MFS 1
major facilitator superfamily protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Arabinose efflux permease family protein id=1866162 bin=GWA2_Methylomirabilis_73_35 species=Streptomyces pristinaespiralis genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_238_21
unknown

Not on your lists

15226..15573
DNA (348bp) protein (116aa)

This feature has no annotations

13_1_40cm_scaffold_238_22
R_Betaproteobacteria_64_12, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15613..15948)
DNA (336bp) protein (112aa)
hypothetical protein; K09771 hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_64_12_curated
hypothetical protein id=14626696 bin=bin7_NC10_sister species=Methanobacterium sp. MB1 genus=Methanobacterium taxon_order=Methanobacteriales taxon_class=Methanobacteria phylum=Euryarchaeota tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_scaffold_238_23
Oscillatoria acuminata, Oscillatoria, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(15948..17066)
DNA (1119bp) protein (373aa)
Putative TIM-barrel fold metal-dependent hydrolase n=1 Tax=Oscillatoria acuminata PCC 6304 RepID=K9TRS1_9CYAN
TIM-barrel fold metal-dependent hydrolase
Putative TIM-barrel fold metal-dependent hydrolase {ECO:0000313|EMBL:AFY84704.1}; TaxID=56110 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Oscillatoria.;" source="Oscillat
13_1_40cm_scaffold_238_24
RBG_13_Deltaproteobacteria_58_19_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17181..17720
DNA (540bp) protein (180aa)
Carboxymuconolactone decarboxylase n=1 Tax=Desulfovibrio fructosivorans JJ RepID=E1K1P6_DESFR
Carboxymuconolactone decarboxylase Tax=RBG_13_Deltaproteobacteria_58_19_curated
cation/multidrug efflux pump
13_1_40cm_scaffold_238_25
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17758..19305
DNA (1548bp) protein (516aa)
h16_A2949; ABC transporter periplasmic protein; K02035 peptide/nickel transport system substrate-binding protein Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
Glutathione ABC transport system substrate binding protein GsiB id=4621965 bin=GWA2_Methylomirabilis_73_35 species=Cupriavidus necator genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
dipeptide ABC transporter substrate-binding protein
13_1_40cm_scaffold_238_26
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19314..20855
DNA (1542bp) protein (514aa)
h16_A2949; ABC transporter periplasmic protein; K02035 peptide/nickel transport system substrate-binding protein Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
Glutathione ABC transport system substrate binding protein GsiB id=4621965 bin=GWA2_Methylomirabilis_73_35 species=Cupriavidus necator genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
h16_A2949; ABC transporter periplasmic protein
13_1_40cm_scaffold_238_27
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20852..21769
DNA (918bp) protein (306aa)
nickel-transporting ATPase (EC:3.6.3.24); K02033 peptide/nickel transport system permease protein Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
ABC transporter permease id=4621966 bin=GWA2_Methylomirabilis_73_35 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter permease
13_1_40cm_scaffold_238_28
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22003..22608
DNA (606bp) protein (202aa)
ABC-type dipeptide/oligopeptide/nickel transport system, permease component id=4621967 bin=GWA2_Methylomirabilis_73_35 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
h16_A2951; ABC transporter permease; K02034 peptide/nickel transport system permease protein Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
gsiD; Oligopeptide ABC transporter permease protein
13_1_40cm_scaffold_238_29
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22721..23725
DNA (1005bp) protein (335aa)
Oligopeptide ABC transporter ATP-binding protein id=4621968 bin=GWA2_Methylomirabilis_73_35 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
oligopeptide/dipeptide ABC transporter ATPase; K02031 peptide/nickel transport system ATP-binding protein Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
Oligopeptide/dipeptide ABC transporter, ATPase subunit
13_1_40cm_scaffold_238_30
RBG_16_Gamma2_60_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23722..24204
DNA (483bp) protein (161aa)
hypothetical protein Tax=RBG_16_Gamma2_60_9_curated
hypothetical protein id=14624306 bin=bin5_DeltaP species=Nitrosomonas sp. genus=Nitrosomonas taxon_order=Nitrosomonadales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
hypothetical protein
Displaying items 1-30 of 39 in total

View Taxonomy