ggKbase home page

13_1_40cm_scaffold_360

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_360_1
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(3..1133)
DNA (1131bp) protein (377aa)
amidase, hydantoinase/carbamoylase family (EC:3.5.1.87); K06016 N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.87] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
amidase, hydantoinase/carbamoylase family (EC:3.5.1.87)
Amidase, hydantoinase/carbamoylase family id=3733098 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_360_2
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(1174..1878)
DNA (705bp) protein (235aa)
livF; high-affinity branched-chain amino acid ABC transporter (ATP-binding protein) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
ABC transporter; K01996 branched-chain amino acid transport system ATP-binding protein id=14626076 bin=bin7_NC10_sister species=Desulfotomaculum hydrothermale genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
livF; high-affinity branched-chain amino acid ABC transporter (ATP-binding protein)
13_1_40cm_scaffold_360_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1865..2590)
DNA (726bp) protein (242aa)
ABC transporter-like protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ABC transporter ATP-binding protein id=14625344 bin=bin7_NC10_sister species=Azospirillum brasilense genus=Azospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
livG; branched-chain amino acid transport system ATP-binding protein
13_1_40cm_scaffold_360_4
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(2605..3606)
DNA (1002bp) protein (334aa)
putative ABC transporter permiase component id=14626607 bin=bin7_NC10_sister species=Alicyclobacillus pohliae genus=Alicyclobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
putative ABC transporter permiase component Tax=CSP1_6_Rokubacteria
putative ABC transporter permiase component
13_1_40cm_scaffold_360_5
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(3606..4520)
DNA (915bp) protein (305aa)
putative Branched-chain amino acid ABC transporter (permease protein); livH-like protein id=14626606 bin=bin7_NC10_sister species=Azospirillum brasilense genus=Azospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
putative Branched-chain amino acid ABC transporter (permease protein); livH-like protein Tax=CSP1_6_Rokubacteria
putative Branched-chain amino acid ABC transporter (permease protein); livH-like protein
13_1_40cm_scaffold_360_6
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(4484..5758)
DNA (1275bp) protein (425aa)
putative Leu/Ile/Val-binding protein homolog 8 id=14626605 bin=bin7_NC10_sister species=Azospirillum brasilense genus=Azospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
putative Leu/Ile/Val-binding protein homolog 8 Tax=CSP1_6_Rokubacteria
putative Leu/Ile/Val-binding protein homolog 8
13_1_40cm_scaffold_360_7
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

5853..6398
DNA (546bp) protein (182aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein id=14626604 bin=bin7_NC10_sister species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_scaffold_360_8
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(6410..6877)
DNA (468bp) protein (156aa)
Uncharacterized protein n=1 Tax=Thiocystis violascens (strain ATCC 17096 / DSM 198 / 6111) RepID=I3YBC0_THIV6
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
hypothetical protein
13_1_40cm_scaffold_360_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6882..7316)
DNA (435bp) protein (145aa)
MaoC-like dehydratase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Acyl dehydratase id=2783141 bin=GWF2_Methylomirabilis_70_14 species=Myxococcus stipitatus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
MaoC-like dehydratase
13_1_40cm_scaffold_360_10
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(7441..7896)
DNA (456bp) protein (152aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
MaoC-like dehydratase id=2783137 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
MaoC-like dehydratase
13_1_40cm_scaffold_360_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(7896..8291)
DNA (396bp) protein (132aa)
thioesterase family protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
thioesterase family protein id=14626601 bin=bin7_NC10_sister species=Alkaliphilus metalliredigens genus=Alkaliphilus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
thioesterase family protein
13_1_40cm_scaffold_360_12
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(8302..9111)
DNA (810bp) protein (270aa)
hypothetical protein; K07090 Tax=GWC2_Rokubacteria_70_16_curated
Putative membrane protein id=4911921 bin=GWC2_Methylomirabilis_70_16 species=Acidobacterium capsulatum genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_1_40cm_scaffold_360_13
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

9134..10228
DNA (1095bp) protein (365aa)
major facilitator transporter Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
EmrB/QacA family drug resistance transporter id=14625974 bin=bin7_NC10_sister species=Frankia sp. genus=Frankia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
major facilitator superfamily transporter
13_1_40cm_scaffold_360_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(10397..12253)
DNA (1857bp) protein (619aa)
3-ketoacyl-ACP synthase III (EC:2.3.1.180) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
3-ketoacyl-ACP synthase III (EC:2.3.1.180) id=14625088 bin=bin7_NC10_sister species=Geodermatophilus obscurus genus=Geodermatophilus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
3-ketoacyl-ACP synthase III (EC:2.3.1.180)
13_1_40cm_scaffold_360_15
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

12314..13492
DNA (1179bp) protein (393aa)
major facilitator superfamily protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
major facilitator transporter id=14626600 bin=bin7_NC10_sister species=Desulfococcus multivorans genus=Desulfococcus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
major facilitator transporter
13_1_40cm_scaffold_360_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13620..15761
DNA (2142bp) protein (714aa)
Multi-sensor hybrid histidine kinase n=1 Tax=Rhodopirellula maiorica SM1 RepID=M5RPG4_9PLAN
multi-sensor signal transduction histidine kinase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
two-component sensor histidine kinase
13_1_40cm_scaffold_360_17
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

15835..16833
DNA (999bp) protein (333aa)
Abortive infection protein; K07052 id=24595870 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Abortive infection protein; K07052 Tax=RBG_16_RIF_WS3X_71_46_curated
abortive infection protein
13_1_40cm_scaffold_360_18
unknown

Not on your lists

comp(16769..17494)
DNA (726bp) protein (242aa)

This feature has no annotations

Displaying 18 items

View Taxonomy