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13_1_40cm_scaffold_1103

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_1103_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2..211)
DNA (210bp) protein (70aa)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_1_40cm_scaffold_1103_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(169..573)
DNA (405bp) protein (135aa)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_1_40cm_scaffold_1103_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(612..3911)
DNA (3300bp) protein (1100aa)
dnaE1; DNA polymerase III, alpha subunit (EC:2.7.7.7); K14162 error-prone DNA polymerase [EC:2.7.7.7] Tax=GWA2_Rokubacteria_73_35_curated
DNA polymerase III, alpha subunit subfamily, putative n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JLP8_9BACT
DNA polymerase III subunit alpha
13_1_40cm_scaffold_1103_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(4168..5742)
DNA (1575bp) protein (525aa)
Putative uncharacterized protein id=4472641 bin=GWA2_Methylomirabilis_73_35 species=Acidobacterium capsulatum genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_scaffold_1103_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5724..6278)
DNA (555bp) protein (185aa)
recombinase A Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
RecA domain protein id=4472640 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
recombinase A
13_1_40cm_scaffold_1103_6
Polaromonas sp. CG9_12, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6651..7925
DNA (1275bp) protein (425aa)
Cardiolipin synthetase {ECO:0000313|EMBL:CDS54800.1}; EC=2.7.8.- {ECO:0000313|EMBL:CDS54800.1};; TaxID=1504672 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; P
Phospholipase D/Transphosphatidylase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SJZ2_THIDA
phospholipase D/transphosphatidylase
13_1_40cm_scaffold_1103_7
unknown

Not on your lists

comp(8140..8232)
DNA (93bp) protein (31aa)

This feature has no annotations

13_1_40cm_scaffold_1103_8
unknown

Not on your lists

comp(8313..8513)
DNA (201bp) protein (67aa)

This feature has no annotations

13_1_40cm_scaffold_1103_9
unknown

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8633..8833
DNA (201bp) protein (67aa)

This feature has no annotations

13_1_40cm_scaffold_1103_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8847..10439)
DNA (1593bp) protein (531aa)
radical SAM domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Radical SAM domain protein id=4478783 bin=GWF2_Methylomirabilis_70_14 species=Gloeobacter violaceus genus=Gloeobacter taxon_order=Gloeobacterales taxon_class=Gloeobacteria phylum=Cyanobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
radical SAM domain-containing protein
13_1_40cm_scaffold_1103_11
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

10558..11325
DNA (768bp) protein (256aa)
3-hydroxyacyl-CoA dehydrogenase type II (EC:1.1.1.35)
putative short chain dehydrogenase id=4478784 bin=GWF2_Methylomirabilis_70_14 species=Pseudonocardia sp. P1 genus=Pseudonocardia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hsd17b10, abad, camr, erab, hadh2, hcd2, hsd10, mhbd, mrpp2, mrx17, mrx31, mrxs10, schad, sdr5c1; hydroxysteroid (17-beta) dehydrogenase 10; K08683 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxy-2-methyl
13_1_40cm_scaffold_1103_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11531..12235
DNA (705bp) protein (235aa)
spermidine synthase-like protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Spermidine synthase id=4472637 bin=GWA2_Methylomirabilis_73_35 species=Gallaecimonas xiamenensis genus=Gallaecimonas taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_1103_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(12211..13890)
DNA (1680bp) protein (560aa)
ABC transporter Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ABC transporter related protein id=4478788 bin=GWF2_Methylomirabilis_70_14 species=Haliangium ochraceum genus=Haliangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter
13_1_40cm_scaffold_1103_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(14148..14594)
DNA (447bp) protein (149aa)
CoA-binding domain-containing protein; K06929 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
CoA-binding domain protein id=4472625 bin=GWA2_Methylomirabilis_73_35 species=Marinithermus hydrothermalis genus=Marinithermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
CoA-binding domain-containing protein
13_1_40cm_scaffold_1103_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(14608..15546)
DNA (939bp) protein (313aa)
3'-5' exonuclease; K03684 ribonuclease D [EC:3.1.13.5] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
3'-5' exonuclease id=4472621 bin=GWA2_Methylomirabilis_73_35 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
3'-5' exonuclease
13_1_40cm_scaffold_1103_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15747..16427)
DNA (681bp) protein (227aa)
short-chain dehydrogenase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Short-chain dehydrogenase/reductase SDR id=4472514 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
short-chain dehydrogenase/reductase SDR
13_1_40cm_scaffold_1103_17
Azoarcus sp. KH32C, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16592..16981)
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=Azoarcus sp. KH32C RepID=H0PV55_9RHOO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL24406.1}; TaxID=748247 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. KH32C.;"
13_1_40cm_scaffold_1103_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

17017..17583
DNA (567bp) protein (189aa)
Endoribonuclease L-PSP id=4472509 bin=GWA2_Methylomirabilis_73_35 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
endoribonuclease L-PSP Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
translation initiation inhibitor
13_1_40cm_scaffold_1103_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

17583..18488
DNA (906bp) protein (302aa)
3-hydroxyisobutyrate dehydrogenase (EC:1.1.1.31); K00020 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
3-hydroxyisobutyrate dehydrogenase (EC:1.1.1.31)
2-hydroxy-3-oxopropionate reductase id=4472507 bin=GWA2_Methylomirabilis_73_35 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_1103_20
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18523..19524
DNA (1002bp) protein (334aa)
Hypothetical lipoprotein n=1 Tax=Alcaligenes xylosoxydans xylosoxydans RepID=Q5GRD1_ALCXX
NMT1/THI5 like family protein 6 Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
ABC transporter periplasmic ligand-binding protein
Displaying 20 items

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