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13_1_40cm_scaffold_817

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_817_1
RLO_Nitrospinae_45_22, Nitrospinae, Bacteria

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265..1161
DNA (897bp) protein (299aa)
Putative transcriptional regulator, LysR family n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MM36_9BACT
LysR family transcriptional regulator Tax=RIFCSPLOWO2_12_FULL_Nitrospinae_45_22_curated
LysR family transcriptional regulator
13_1_40cm_scaffold_817_2
CSP1_3_Armatimonadetes, Armatimonadetes, Bacteria

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1170..1589
DNA (420bp) protein (140aa)
hypothetical protein id=14632057 bin=bin9_gal15 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin9_gal15 organism_group=GAL15
hypothetical protein Tax=CSP1_3_Armatimonadetes
hypothetical protein
13_1_40cm_scaffold_817_3
RBG_16_Armatimonadetes_67_12_curated, Armatimonadetes, Bacteria

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1629..2903
DNA (1275bp) protein (425aa)
seryl-tRNA synthetase; K01875 seryl-tRNA synthetase [EC:6.1.1.11] id=14632056 bin=bin9_gal15 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin9_gal15 organism_group=GAL15
seryl-tRNA synthetase (EC:6.1.1.11) Tax=RBG_16_Armatimonadetes_67_12_curated
seryl-tRNA synthetase (EC:6.1.1.11)
13_1_40cm_scaffold_817_4
CSP1_3_Armatimonadetes, Armatimonadetes, Bacteria

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2932..4449
DNA (1518bp) protein (506aa)
spermine synthase id=14632710 bin=bin9_gal15 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin9_gal15 organism_group=GAL15
spermine synthase Tax=CSP1_3_Armatimonadetes
spermine synthase
13_1_40cm_scaffold_817_5
Streptomyces violaceusniger, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(4520..5497)
DNA (978bp) protein (326aa)
hypothetical protein n=1 Tax=Saccharomonospora halophila RepID=UPI00038173BB
2-nitropropane dioxygenase
2-nitropropane dioxygenase NPD {ECO:0000313|EMBL:AEM85613.1}; TaxID=653045 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces violaceusniger T
13_1_40cm_scaffold_817_6
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

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comp(5561..6031)
DNA (471bp) protein (157aa)
hypothetical protein Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
hypothetical protein id=14632055 bin=bin9_gal15 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin9_gal15 organism_group=GAL15
hypothetical protein
13_1_40cm_scaffold_817_7
RBG_16_Armatimonadetes_67_12_curated, Armatimonadetes, Bacteria

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comp(6241..6876)
DNA (636bp) protein (212aa)
recombination protein RecR; K06187 recombination protein RecR Tax=RBG_16_Armatimonadetes_67_12_curated
recD; recombination protein; K06187 recombination protein RecR id=14632051 bin=bin9_gal15 species=unknown genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin9_gal15 organism_group=GAL15
DNA replication and repair protein RecR
13_1_40cm_scaffold_817_8
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

comp(6882..7196)
DNA (315bp) protein (105aa)
hypothetical protein; K09747 hypothetical protein Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
hypothetical protein; K09747 hypothetical protein id=14632050 bin=bin9_gal15 species=Sulfobacillus acidophilus genus=Sulfobacillus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin9_gal15 organism_group=GAL15
hypothetical protein
13_1_40cm_scaffold_817_9
RBG_16_Armatimonadetes_67_12_curated, Armatimonadetes, Bacteria

Not on your lists

comp(7275..8966)
DNA (1692bp) protein (564aa)
DNA polymerase III subunits gamma and tau (EC:2.7.7.7); K02343 DNA polymerase III subunit gamma/tau [EC:2.7.7.7] Tax=RBG_16_Armatimonadetes_67_12_curated
DNA polymerase III subunits gamma and tau (EC:2.7.7.7); K02343 DNA polymerase III subunit gamma/tau [EC:2.7.7.7] id=14632049 bin=bin9_gal15 species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin9_gal15 organism_group=GAL15
DNA polymerase III subunits gamma and tau (EC:2.7.7.7)
13_1_40cm_scaffold_817_10
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

9176..10222
DNA (1047bp) protein (349aa)
cation transport ATPase; K07052 Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
Abortive infection protein; K07052 id=14632048 bin=bin9_gal15 species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin9_gal15 organism_group=GAL15
Predicted membrane-associated, metal-dependent hydrolase
13_1_40cm_scaffold_817_11
RBG_16_Spirochaete_67_19_curated, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

10354..10785
DNA (432bp) protein (144aa)
glyoxalase/bleomycin resistance protein/dioxygenase; K06996 Tax=RBG_16_Spirochaete_67_19_curated
Glyoxalase/bleomycin resistance protein/dioxygenase id=1978965 bin=GWE2_RBX1_39_32 species=Dechloromonas aromatica genus=Dechloromonas taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
glyoxalase/bleomycin resistance protein/dioxygenase
13_1_40cm_scaffold_817_12
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

comp(11126..11668)
DNA (543bp) protein (181aa)
lepB; signal peptidase I (EC:3.4.21.89) Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
signal peptidase I (EC:3.4.21.89); K03100 signal peptidase I [EC:3.4.21.89] id=14632655 bin=bin9_gal15 species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin9_gal15 organism_group=GAL15
signal peptidase I (EC:3.4.21.89)
13_1_40cm_scaffold_817_trna_1
unknown

Not on your lists

comp(12174..12260)
DNA (87bp)
transferRNA
13_1_40cm_scaffold_817_13
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

12462..12896
DNA (435bp) protein (145aa)
id=24474714 bin=RBG_19FT_COMBO_GAL15_69_19 tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
id=24474714 Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
13_1_40cm_scaffold_817_14
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

13228..14460
DNA (1233bp) protein (411aa)
beta-lactamase domain-containing protein; K07576 metallo-beta-lactamase family protein Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
beta-lactamase domain-containing protein; K07576 metallo-beta-lactamase family protein id=14632874 bin=bin9_gal15 tax=bin9_gal15 organism_group=GAL15
hypothetical protein
Displaying 15 items

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