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13_1_40cm_scaffold_1452

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_1452_1
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

2..2509
DNA (2508bp) protein (836aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00037DE12E
TonB-dependent receptor, plug
TonB-dependent receptor, plug {ECO:0000313|EMBL:ABJ88548.1}; Flags: Precursor;; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" s
13_1_40cm_scaffold_1452_2
RBG_16_Betaproteobacteria_56_24_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2609..2965
DNA (357bp) protein (119aa)
Peptidylprolyl isomerase (EC:5.2.1.8); K03772 FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8] Tax=RBG_16_Betaproteobacteria_56_24_curated
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BLB7_9GAMM
FKBP-type peptidyl-prolyl cis-trans isomerase
13_1_40cm_scaffold_1452_3
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

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3100..4467
DNA (1368bp) protein (456aa)
Major facilitator superfamily MFS_1 n=2 Tax=Chloroflexus RepID=A9WAF7_CHLAA id=5225037 bin=16ft_combo_ws3_JS1 species=unknown genus=Chloroflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
major facilitator transporter Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
major facilitator transporter
13_1_40cm_scaffold_1452_4
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

4492..5271
DNA (780bp) protein (260aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CC630
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
13_1_40cm_scaffold_1452_5
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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5474..5980
DNA (507bp) protein (169aa)
Phosphoesterase {ECO:0000256|RuleBase:RU362039}; EC=3.1.4.- {ECO:0000256|RuleBase:RU362039};; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AB72_GEMAT
phosphodiesterase, MJ0936 family
13_1_40cm_scaffold_1452_6
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(5961..6698)
DNA (738bp) protein (246aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DBI2_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
13_1_40cm_scaffold_1452_7

Not on your lists

6855..7751
DNA (897bp) protein (299aa)
Predicted hydrolases or acyltransferases (Alpha/beta hydrolase superfamily) n=1 Tax=uncultured Chloroflexi bacterium HF0770_09E03 RepID=E0XYP4_9CHLR
Predicted hydrolases or acyltransferases (Alpha/beta hydrolase superfamily) {ECO:0000313|EMBL:ADI19535.1}; TaxID=710738 species="Bacteria; Chloroflexi; environmental samples.;" source="uncultured Chlo
putative alpha/beta superfamily hydrolase
13_1_40cm_scaffold_1452_8
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

7748..8833
DNA (1086bp) protein (362aa)
beta-lactamase class A Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
beta-lactamase id=24425454 bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=Emticicia oligotrophica genus=Emticicia taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
beta-lactamase class A
13_1_40cm_scaffold_1452_9
GWA1_Bdellovibrionales_52_35_curated, Bdellovibrionaceae, Bdellovibrionales, Bdellovibrio, Bacteria

Not on your lists

9146..9631
DNA (486bp) protein (162aa)
pseudouridine synthase, rsuA family (EC:5.4.99.-); K06178 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] Tax=GWA1_Bdellovibrionales_52_35_curated
pseudouridine synthase, rsuA family (EC:5.4.99.-)
Pseudouridine synthase id=2881735 bin=GWA1_Deltaproteobacteria_52_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA1_Deltaproteobacteria_52_35 organism_group=Deltaproteobacteria organism_desc=Good + Candidate for further analysis!
13_1_40cm_scaffold_1452_10
Psychrobacter sp. 1501(2011), Psychrobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9612..10175)
DNA (564bp) protein (188aa)
PRC-barrel domain protein {ECO:0000313|EMBL:EGK08467.1}; TaxID=1002339 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Psychrobacter.;" source="Psychrobacter sp
13_1_40cm_scaffold_1452_11
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

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10202..12094
DNA (1893bp) protein (631aa)
pepF; oligoendopeptidase F PepF; K08602 oligoendopeptidase F [EC:3.4.24.-] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
pepF; oligoendopeptidase F PepF; K08602 oligoendopeptidase F [EC:3.4.24.-] id=12554698 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=Opitutae phylum=Verrucomicrobia tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
oligoendopeptidase F
13_1_40cm_scaffold_1452_12
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(12110..12544)
DNA (435bp) protein (145aa)
CoA-binding domain protein n=1 Tax=Paenibacillus sp. (strain JDR-2) RepID=C6D4X1_PAESJ
CoA-binding protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
CoA-binding protein
13_1_40cm_scaffold_1452_13
unknown

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comp(12557..12898)
DNA (342bp) protein (114aa)

This feature has no annotations

13_1_40cm_scaffold_1452_14
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

12998..14686
DNA (1689bp) protein (563aa)
Amidohydrolase 3 n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IL06_KORVE
amidohydrolase 3
Amidohydrolase 3 {ECO:0000313|EMBL:ABF42444.1}; Flags: Precursor;; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versa
13_1_40cm_scaffold_1452_15
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

14691..16532
DNA (1842bp) protein (614aa)
id=12554635 Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
id=12554635 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
13_1_40cm_scaffold_1452_16
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(16499..17791)
DNA (1293bp) protein (431aa)
Amino acid permease n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A775_GEMAT
amino acid permease Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
amino acid permease
13_1_40cm_scaffold_1452_17
RLO_Verrucomicrobia_64_8, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

17878..18993
DNA (1116bp) protein (372aa)
hypothetical protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C540A
yciF-A; protein yciF Tax=RIFCSPLOWO2_12_FULL_Verrucomicrobia_64_8_curated
protein of unknown function DUF892
13_1_40cm_scaffold_1452_18
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(19319..19726)
DNA (408bp) protein (136aa)
Putative uncharacterized protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IPV0_KORVE
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
hypothetical protein
13_1_40cm_scaffold_1452_19
unknown

Not on your lists

comp(19723..19947)
DNA (225bp) protein (75aa)

This feature has no annotations

13_1_40cm_scaffold_1452_20
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(19922..20449)
DNA (528bp) protein (176aa)
Sigma-24, ECF subfamily n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IPU9_KORVE
ECF subfamily RNA polymerase sigma-24 factor Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
ECF subfamily RNA polymerase sigma-24 factor
13_1_40cm_scaffold_1452_21
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(20484..21827)
DNA (1344bp) protein (448aa)
amine oxidase (EC:1.4.3.4); K00274 monoamine oxidase [EC:1.4.3.4] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
Monoamine oxidase n=1 Tax=Leptolyngbya sp. PCC 6406 RepID=L8L9F8_9CYAN
amine oxidase
13_1_40cm_scaffold_1452_22
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

21935..22789
DNA (855bp) protein (285aa)
Rhodanese-related sulfurtransferase-like protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
Rhodanese-related sulfurtransferase-like protein id=14431447 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
Rhodanese-related sulfurtransferase-like protein
13_1_40cm_scaffold_1452_23
Burkholderia sp. AU4i, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22844..26179
DNA (3336bp) protein (1112aa)
Transglutaminase-like domain protein n=1 Tax=Burkholderia vietnamiensis AU4i RepID=U2FX98_BURVI
Transglutaminase-like domain protein {ECO:0000313|EMBL:ERJ35315.1}; TaxID=1335308 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia c
transglutaminase domain-containing protein
13_1_40cm_scaffold_1452_24
Pseudomonas knackmussii, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26343..28820
DNA (2478bp) protein (826aa)
hypothetical protein n=1 Tax=Rhodocyclaceae bacterium RZ94 RepID=UPI0003792D07
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDF86547.1}; TaxID=1301098 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas knack
13_1_40cm_scaffold_1452_25
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28817..29752
DNA (936bp) protein (312aa)
Transglutaminase-like enzyme, predicted cysteine protease n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QJ92_AZOSU
transglutaminase
Transglutaminase-like enzyme, predicted cysteine protease {ECO:0000313|EMBL:AEV27561.1}; TaxID=640081 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azospira.;"
13_1_40cm_scaffold_1452_26
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30101..30907
DNA (807bp) protein (269aa)
Transglutaminase domain protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TTF1_9PROT
Transglutaminase domain protein {ECO:0000313|EMBL:EDP64094.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
transglutaminase
13_1_40cm_scaffold_1452_27
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30922..31881
DNA (960bp) protein (320aa)
Transglutaminase-like domain protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TTF0_9PROT
Transglutaminase-like domain protein {ECO:0000313|EMBL:EDP64093.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
hypothetical protein
13_1_40cm_scaffold_1452_28
Planktothrix agardhii, Planktothrix, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(31775..32770)
DNA (996bp) protein (332aa)
hypothetical protein n=1 Tax=Oscillatoria sp. PCC 10802 RepID=UPI00034660A7
Uncharacterized protein {ECO:0000313|EMBL:KEI67991.1}; TaxID=388467 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Planktothrix.;" source="Planktothrix agardhii NIVA-CYA 126
hypothetical protein
13_1_40cm_scaffold_1452_29
Planctopirus limnophila, Planctopirus, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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comp(32770..34020)
DNA (1251bp) protein (417aa)
Uncharacterized protein n=1 Tax=Planctomyces limnophilus (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290) RepID=D5SW41_PLAL2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADG67326.1}; TaxID=521674 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Planctopirus.;" source="Planctopirus limnoph
Displaying 29 items

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