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13_1_40cm_scaffold_1487

Search features with annotation key words

Displaying items 1-30 of 48 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_1487_1
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(2..847)
DNA (846bp) protein (282aa)
selA; L-seryl-tRNA(Sec) selenium transferase; K01042 L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
selA; L-seryl-tRNA(Sec) selenium transferase (Selenocysteine synthase) (Sec synthase) (Selenocysteinyl-tRNA(Sec) synthase) (EC:2.9.1.1)
L-seryl-tRNA(Sec) selenium transferase n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MEN6_9BACT
13_1_40cm_scaffold_1487_2
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

891..1304
DNA (414bp) protein (138aa)
id=12555629 Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
id=3322991 bin=GWC2_Nitrospirae_57_13 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
13_1_40cm_scaffold_1487_3
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

1311..1889
DNA (579bp) protein (193aa)
Putative uncharacterized protein n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LHF5_CHLTF
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
hypothetical protein
13_1_40cm_scaffold_1487_4
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(1967..2170)
DNA (204bp) protein (68aa)
cold-shock DNA-binding domain-containing protein; K03704 cold shock protein (beta-ribbon, CspA family) Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
cold-shock DNA-binding domain-containing protein; K03704 cold shock protein (beta-ribbon, CspA family) id=12555628 bin=CNBR_ACIDO species=Bacillus cellulosilyticus genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
cold-shock DNA-binding domain-containing protein
13_1_40cm_scaffold_1487_5
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

2315..3922
DNA (1608bp) protein (536aa)
IMP cyclohydrolase (EC:3.5.4.10); K00602 phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] id=12555627 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (EC:2.1.2.3)
IMP cyclohydrolase / Phosphoribosylaminoimidazolecarboxamide formyltransferase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
13_1_40cm_scaffold_1487_6

Not on your lists

3987..4151
DNA (165bp) protein (55aa)
Putative uncharacterized protein n=1 Tax=uncultured archaeon GZfos22D9 RepID=Q64CH7_9ARCH
Putative uncharacterized protein {ECO:0000313|EMBL:AAU82900.1}; TaxID=286719 species="Archaea; environmental samples.;" source="uncultured archaeon GZfos22D9.;"
hypothetical protein
13_1_40cm_scaffold_1487_7
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

4516..4716
DNA (201bp) protein (67aa)
Serine/threonine protein kinase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q021S6_SOLUE
serine/threonine protein kinase Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
serine/threonine protein kinase
13_1_40cm_scaffold_1487_8
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(5027..6055)
DNA (1029bp) protein (343aa)
hypothetical protein; K03272 D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
rfaEa; d-beta-d-heptose 7-phosphate kinase (EC:2.7.1.-)
D-beta-D-heptose 7-phosphate kinase, domain I of bifunctional protein HldE id=4780015 bin=GWA2_OP3_52_12 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
13_1_40cm_scaffold_1487_9
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(6174..7394)
DNA (1221bp) protein (407aa)
O-antigen polymerase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
O-antigen polymerase id=12555623 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
O-antigen polymerase
13_1_40cm_scaffold_1487_10
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

7453..9516
DNA (2064bp) protein (688aa)
thimet oligopeptidase (EC:3.4.24.15); K01392 thimet oligopeptidase [EC:3.4.24.15] Tax=RBG_16_RIF_WS3X_71_46_curated
thimet oligopeptidase (EC:3.4.24.15); K01392 thimet oligopeptidase [EC:3.4.24.15] id=24502008 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Stigmatella aurantiaca genus=Stigmatella taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
M3 family peptidase
13_1_40cm_scaffold_1487_11
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(9570..10673)
DNA (1104bp) protein (368aa)
rfaF/gmhB; bifunctional lipopolysaccharide heptosyltransferase II/D, D-heptose 1,7-bisphosphate phosphatase (EC:2.4.-.- 3.1.3.-); K02843 heptosyltransferase II [EC:2.4.-.-] Tax=RIFCSPLOWO2_12_FULL_Aci
putative lipopolysaccharide heptosyltransferase III (EC:2.4.1.-); K02849 heptosyltransferase III [EC:2.4.-.-] id=12555622 bin=CNBR_ACIDO species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
putative lipopolysaccharide heptosyltransferase III (EC:2.4.1.-)
13_1_40cm_scaffold_1487_12
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(10779..10949)
DNA (171bp) protein (57aa)
hypothetical protein; K09791 hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
hypothetical protein; K09791 hypothetical protein id=12555621 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
13_1_40cm_scaffold_1487_13
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

11000..12955
DNA (1956bp) protein (652aa)
Tetratricopeptide repeat protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IHP7_KORVE
Flp pilus assembly protein TadD, contains TPR repeats Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
hypothetical protein
13_1_40cm_scaffold_1487_14
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

13161..14033
DNA (873bp) protein (291aa)
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
13_1_40cm_scaffold_1487_15
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

14095..14970
DNA (876bp) protein (292aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC:2.7.1.148) Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
ipk; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; K00919 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148] id=12555618 bin=CNBR_ACIDO species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC:2.7.1.148)
13_1_40cm_scaffold_1487_trna_1
unknown

Not on your lists

15120..15191
DNA (72bp)
transferRNA
13_1_40cm_scaffold_1487_16
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

15490..16116
DNA (627bp) protein (209aa)
ribose-phosphate pyrophosphokinase (EC:2.7.6.1); K00948 ribose-phosphate pyrophosphokinase [EC:2.7.6.1] id=12555617 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
ribose-phosphate pyrophosphokinase (EC:2.7.6.1)
ribose-phosphate pyrophosphokinase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
13_1_40cm_scaffold_1487_17
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists


16146..16835
DNA (690bp) protein (230aa)
50S ribosomal protein L25; K02897 large subunit ribosomal protein L25 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
ribosomal protein L25, Ctc-form; K02897 large subunit ribosomal protein L25 id=12555616 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
50S ribosomal protein L25
13_1_40cm_scaffold_1487_18
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

16898..17476
DNA (579bp) protein (193aa)
peptidyl-tRNA hydrolase (EC:3.1.1.29); K01056 peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
Peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HR83_9FIRM
13_1_40cm_scaffold_1487_19
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists


17669..18118
DNA (450bp) protein (150aa)
30S ribosomal protein S6; K02990 small subunit ribosomal protein S6 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
rpsF; 30S ribosomal protein S6; K02990 small subunit ribosomal protein S6 id=12555614 bin=CNBR_ACIDO species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
rpsF; 30S ribosomal protein S6
13_1_40cm_scaffold_1487_20
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists


18506..18922
DNA (417bp) protein (139aa)
rplI; 50S ribosomal protein L9; K02939 large subunit ribosomal protein L9 Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
rplI; 50S ribosomal protein L9; K02939 large subunit ribosomal protein L9 id=12555612 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
rplI; 50S ribosomal protein L9
13_1_40cm_scaffold_1487_21
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

19068..20420
DNA (1353bp) protein (451aa)
replicative DNA helicase; K02314 replicative DNA helicase [EC:3.6.4.12] id=12555611 bin=CNBR_ACIDO species=Desulfurivibrio alkaliphilus genus=Desulfurivibrio taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
primary replicative DNA helicase (EC:3.6.1.-)
replicative DNA helicase Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
13_1_40cm_scaffold_1487_22
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

20533..21750
DNA (1218bp) protein (406aa)
alr; alanine racemase; K01775 alanine racemase [EC:5.1.1.1] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
alr; alanine racemase; K01775 alanine racemase [EC:5.1.1.1] id=15192988 bin=GWC2_NOV_55_46 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_NOV_55_46 organism_group=Proteobacteria
alr; alanine racemase
13_1_40cm_scaffold_1487_23
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

21811..23262
DNA (1452bp) protein (484aa)
DNA repair protein RadA; K04485 DNA repair protein RadA/Sms Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
DNA repair protein RadA; K04485 DNA repair protein RadA/Sms id=12555609 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
DNA repair protein RadA
13_1_40cm_scaffold_1487_24
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

23376..24443
DNA (1068bp) protein (356aa)
PilT protein-like Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PilT protein-like id=12555608 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
twitching motility protein PilT
13_1_40cm_scaffold_1487_25
unknown

Not on your lists

24465..24860
DNA (396bp) protein (132aa)

This feature has no annotations

13_1_40cm_scaffold_1487_26
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

24867..25376
DNA (510bp) protein (170aa)
1-acyl-sn-glycerol-3-phosphate acyltransferase; K00655 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
1-acyl-sn-glycerol-3-phosphate acyltransferase (EC:2.3.1.51); K00655 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] id=12555607 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
1-acyl-sn-glycerol-3-phosphate acyltransferase
13_1_40cm_scaffold_1487_27
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

25376..25549
DNA (174bp) protein (58aa)
1-acyl-sn-glycerol-3-phosphate acyltransferase (EC:2.3.1.51); K00655 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
13_1_40cm_scaffold_1487_28
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

Not on your lists

25715..26701
DNA (987bp) protein (329aa)
Uncharacterized protein n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TQQ9_9CHLR
hypothetical protein Tax=RBG_16_Euryarchaeota_68_13_curated
hypothetical protein
13_1_40cm_scaffold_1487_29
unknown

Not on your lists

comp(26772..26909)
DNA (138bp) protein (46aa)

This feature has no annotations

Displaying items 1-30 of 48 in total

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